Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002944g0130 Nicotiana tabacum HOM05D006501 ORTHO05D008241 6.5e-102 374.0 183 100.0
Nitab4.5_0006656g0030 Nicotiana tabacum HOM05D006501 ORTHO05D008241 1.6e-95 352.8 189 92.6
PGSC0003DMG400005788 Solanum tuberosum HOM05D006501 ORTHO05D008241 1.5e-77 293.1 189 83.6
Solyc08g008270.4 Solanum lycopersicum HOM05D006501 ORTHO05D008241 2.5e-77 292.4 189 83.6
Sopen08g004120 Solanum pennellii HOM05D006501 ORTHO05D008241 7.3e-77 290.8 189 83.6
CAN.G792.46 Capsicum annuum HOM05D006501 ORTHO05D008241 1.4e-75 286.6 189 81.5
Peaxi162Scf00102g01748 Petunia axillaris HOM05D006501 ORTHO05D008241 1.1e-64 250.4 186 75.3
CSS0007891 Camellia sinensis var. sinensis HOM05D006501 ORTHO05D008241 1.3e-57 226.9 193 64.8
GSVIVG01019510001 Vitis vinifera HOM05D006501 ORTHO05D003403 4.9e-57 224.9 189 65.6
Dinv37544 Davidia involucrata HOM05D006501 ORTHO05D008241 2.7e-55 219.2 193 63.2
Lsat_1_v5_gn_6_12120 Lactuca sativa HOM05D006501 ORTHO05D008241 1.3e-54 216.9 163 68.7
Duzib205G0456 Durio zibethinus HOM05D006501 ORTHO05D008241 4.3e-53 211.8 178 62.4
MBI07_g24349_MAGBIO Magnolia biondii HOM05D006501 ORTHO05D008241 7.3e-53 211.1 147 74.1
Actinidia27329 Actinidia chinensis HOM05D006501 ORTHO05D008241 1.2e-52 210.3 190 63.7
Rhsim07G0083200 Rhododendron simsii HOM05D006501 ORTHO05D008241 3.6e-52 208.8 185 62.7
Oeu009949.1 Olea europaea HOM05D006501 ORTHO05D008241 6.2e-52 208.0 198 60.6
Potri.003G138500 Populus trichocarpa HOM05D006501 ORTHO05D008241 6.2e-52 208.0 150 74.0
vmacro13905 Vaccinium macrocarpon HOM05D006501 ORTHO05D008241 6.2e-52 208.0 202 59.9
TWI60G0228 Tripterygium wilfordii HOM05D006501 ORTHO05D008241 1.8e-51 206.5 200 61.0
FAN13G2672 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.4e-51 206.1 166 66.9
CANSAT21G0520 Cannabis sativa HOM05D006501 ORTHO05D008241 3.1e-51 205.7 195 61.5
DCAR_005033 Daucus carota HOM05D006501 ORTHO05D008241 3.1e-51 205.7 187 62.0
FAN04G2094 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.6e-50 202.6 166 66.3
Haze_08636 Corylus avellana HOM05D006501 ORTHO05D008241 3.4e-50 202.2 154 70.1
FAN08G0187 Fragaria x ananassa HOM05D006501 ORTHO05D008241 3.4e-50 202.2 166 66.3
Sabra03G0099700 Salix brachista HOM05D006501 ORTHO05D003403 3.4e-50 202.2 154 70.8
FAN18G4356 Fragaria x ananassa HOM05D006501 ORTHO05D008241 4.4e-50 201.8 169 65.1
ClCG01G001980 Citrullus lanatus HOM05D006501 ORTHO05D008241 5.8e-50 201.4 179 61.5
TAR374G0759 Trochodendron aralioides HOM05D006501 ORTHO05D008241 1.3e-49 200.3 125 83.2
Gohir.A08G100000 Gossypium hirsutum HOM05D006501 ORTHO05D008241 1.7e-49 199.9 184 58.7
TAR374G1465 Trochodendron aralioides HOM05D006501 ORTHO05D008241 1.7e-49 199.9 125 83.2
FAN18G2585 Fragaria x ananassa HOM05D006501 ORTHO05D008241 2.2e-49 199.5 169 64.5
Manes.02G011600 Manihot esculenta HOM05D006501 ORTHO05D008241 2.2e-49 199.5 192 61.5
Gohir.D08G131800 Gossypium hirsutum HOM05D006501 ORTHO05D008241 3.8e-49 198.7 184 58.2
Gorai.004G134700 Gossypium raimondii HOM05D006501 ORTHO05D008241 3.8e-49 198.7 184 58.7
SalBow1G7260 Salvia bowleyana HOM05D006501 ORTHO05D008241 4.9e-49 198.4 137 73.7
SalBow1G8172 Salvia bowleyana HOM05D006501 ORTHO05D008241 4.9e-49 198.4 137 73.7
MELO3C005743.2 Cucumis melo HOM05D006501 ORTHO05D008241 6.4e-49 198.0 138 73.2
Ca_17489_v3 Cicer arietinum L. HOM05D006501 ORTHO05D008241 8.4e-49 197.6 167 66.5
CiPaw.11G123100 Carya illinoinensis HOM05D006501 ORTHO05D008241 1.1e-48 197.2 118 81.4
Nn3g19061 Nelumbo nucifera HOM05D006501 ORTHO05D008241 1.1e-48 197.2 189 61.4
RcHm_v2.0_Chr7g0195201 Rosa chinensis HOM05D006501 ORTHO05D008241 1.1e-48 197.2 170 66.5
CsaV3_5G002110 Cucumis sativus L. HOM05D006501 ORTHO05D008241 1.4e-48 196.8 138 72.5
Aqoxy7G00141 Aquilegia oxysepala HOM05D006501 ORTHO05D008241 3.2e-48 195.7 142 72.5
Cc08_g15900 Coffea canephora HOM05D006501 ORTHO05D008241 3.2e-48 195.7 191 59.7
BcaB07g31511 Brassica carinata HOM05D006501 ORTHO05D008241 4.1e-48 195.3 121 78.5
Cpa.g.sc79.61 Carica papaya HOM05D006501 ORTHO05D008241 4.1e-48 195.3 132 74.2
Thecc.03G294700 Theobroma cacao HOM05D006501 ORTHO05D008241 4.1e-48 195.3 186 60.8
VMungo0251G3563 Vigna mungo HOM05D006501 ORTHO05D008241 4.1e-48 195.3 129 77.5
Atru.chr4.2141 Acer truncatum HOM05D006501 ORTHO05D008241 9.2e-48 194.1 180 61.7
Actinidia22724 Actinidia chinensis HOM05D006501 ORTHO05D008241 9.2e-48 194.1 157 66.9
Phvul.002G297000 Phaseolus vulgaris HOM05D006501 ORTHO05D008241 1.6e-47 193.4 125 80.8
Psat7g027120 Pisum sativum HOM05D006501 ORTHO05D008241 1.6e-47 193.4 134 76.1
MSTRG.25662 Avicennia marina HOM05D006501 ORTHO05D008241 2.7e-47 192.6 186 58.6
BcaB07g31509 Brassica carinata HOM05D006501 ORTHO05D008241 4.6e-47 191.8 119 79.0
COL.COLO4_10671 Corchorus olitorius HOM05D006501 ORTHO05D008241 4.6e-47 191.8 183 59.0
MD06G1104000 Malus domestica HOM05D006501 ORTHO05D008241 4.6e-47 191.8 190 55.8
Medtr8g099345 Medicago truncatula HOM05D006501 ORTHO05D008241 4.6e-47 191.8 137 75.9
Glyma.05G215800 Glycine max HOM05D006501 ORTHO05D008241 6.0e-47 191.4 125 78.4
Hma1.2p1_0952F.1_g241030 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 7.8e-47 191.0 167 64.1
Sed0001613 Sechium edule HOM05D006501 ORTHO05D008241 7.8e-47 191.0 186 58.1
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 1.7e-46 189.9 134 76.9
unitig_46.g18618 Utricularia gibba HOM05D006501 ORTHO05D008241 2.3e-46 189.5 155 66.5
BcaC04g22628 Brassica carinata HOM05D006501 ORTHO05D008241 3.0e-46 189.1 121 77.7
A09p14290 Brassica napus HOM05D006501 ORTHO05D008241 3.0e-46 189.1 121 77.7
C09p17200 Brassica napus HOM05D006501 ORTHO05D008241 3.0e-46 189.1 121 77.7
PGR042G3674 Punica granatum HOM05D006501 ORTHO05D008241 3.9e-46 188.7 193 57.0
Hund11400 Selenicereus undatus HOM05D006501 ORTHO05D008241 3.9e-46 188.7 193 55.4
Lalb_Chr05g0224191 Lupinus albus HOM05D006501 ORTHO05D008241 5.1e-46 188.3 179 62.6
Aa31LG2G1320 Aethionema arabicum HOM05D005266 ORTHO05D006416 6.6e-46 188.0 112 83.0
MD14G1122900 Malus domestica HOM05D006501 ORTHO05D008241 6.6e-46 188.0 196 52.6
HanXRQChr09g0256331 Helianthus annuus HOM05D006501 ORTHO05D008241 8.7e-46 187.6 174 60.9
Prupe.5G116900 Prunus persica HOM05D006501 ORTHO05D008241 1.1e-45 187.2 189 57.1
THA.LOC104809338 Tarenaya hassleriana HOM05D006501 ORTHO05D008241 1.1e-45 187.2 128 75.8
Cfa022928 Carpinus fangiana HOM05D006501 ORTHO05D008241 1.5e-45 186.8 153 66.7
BraA09t37076Z Brassica rapa HOM05D006501 ORTHO05D008241 3.3e-45 185.7 127 75.6
SGA_v2.0_scaffold305G47943 Striga asiatica HOM05D006501 ORTHO05D008241 3.3e-45 185.7 152 65.8
AT1G64355 Arabidopsis thaliana HOM05D006501 ORTHO05D008241 4.3e-45 185.3 181 57.5
Duzib068G1433 Durio zibethinus HOM05D006501 ORTHO05D008241 4.3e-45 185.3 156 62.8
arahy.Tifrunner.gnm1.ann1.68SH35 Arachis hypogaea HOM05D006501 ORTHO05D008241 5.6e-45 184.9 111 82.9
Lj4g0012209 Lotus japonicus HOM05D006501 ORTHO05D008241 9.6e-45 184.1 168 63.1
Zm00001eb296420 Zea mays HOM05D006501 ORTHO05D008241 9.6e-45 184.1 143 69.2
arahy.Tifrunner.gnm1.ann1.MC0I99 Arachis hypogaea HOM05D006501 ORTHO05D008241 1.2e-44 183.7 98 90.8
Sc01g0010190 Simmondsia chinensis HOM05D006501 ORTHO05D008241 2.1e-44 183.0 171 59.6
HPP92_004586 Vanilla planifolia HOM05D006501 ORTHO05D000003 3.6e-44 182.2 145 66.2
Ciclev10022489m.g Citrus clementina HOM05D006501 ORTHO05D008241 4.7e-44 181.8 123 76.4
Migut.A00672 Erythranthe guttata HOM05D006501 ORTHO05D008241 4.7e-44 181.8 170 62.4
COL.COLO4_10669 Corchorus olitorius HOM05D006501 ORTHO05D008241 8.1e-44 181.0 161 62.7
BolC9t54619H Brassica oleracea HOM05D006501 ORTHO05D008241 1.1e-43 180.6 127 73.2
AL2G10510 Arabidopsis lyrata HOM05D006501 ORTHO05D008241 1.8e-43 179.9 107 83.2
Sp2g00400 Schrenkiella parvula HOM05D006501 ORTHO05D008241 2.4e-43 179.5 174 60.3
AagrBONN_evm.TU.Sc2ySwM_362.747 Anthoceros agrestis HOM05D006501 ORTHO05D008241 1.5e-42 176.8 141 64.5
PSO135G1023 Papaver somniferum HOM05D006501 ORTHO05D008241 2.6e-42 176.0 168 61.3
Pp3c8_24130 Physcomitrium patens HOM05D006501 ORTHO05D008241 2.6e-42 176.0 115 78.3
Eucgr.E00849 Eucalyptus grandis HOM05D006501 ORTHO05D008241 3.4e-42 175.6 125 75.2
PSO384G3305 Papaver somniferum HOM05D006501 ORTHO05D008241 6.4e-41 171.4 168 60.1
Hma1.2p1_0952F.1_g241020 Hydrangea macrophylla HOM05D006501 ORTHO05D008241 1.1e-40 170.6 181 54.7
SEGI_07201 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 2.4e-40 169.5 127 69.3
Atru.chr9.2018 Acer truncatum HOM05D006501 ORTHO05D008241 9.3e-40 167.5 187 56.1
CDE10G1320 Ceratophyllum demersum HOM05D000199 ORTHO05D001448 1.2e-39 167.2 123 69.1
Sed0024637 Sechium edule HOM05D006501 ORTHO05D008241 1.6e-39 166.8 164 58.5
Mapoly0049s0020 Marchantia polymorpha HOM05D006501 ORTHO05D008241 4.3e-37 158.7 122 70.5
Migut.E01245 Erythranthe guttata HOM05D006501 ORTHO05D008241 2.8e-36 156.0 189 51.3
SalBow8G4809 Salvia bowleyana HOM05D006501 ORTHO05D008241 2.8e-36 156.0 202 48.0
BcaC04g22630 Brassica carinata HOM05D006501 ORTHO05D008241 1.8e-35 153.3 80 92.5
Cre08.g376450 Chlamydomonas reinhardtii HOM05D006501 ORTHO05D008241 4.6e-31 138.7 120 62.5
Potri.001G093001 Populus trichocarpa HOM05D006501 ORTHO05D008241 1.8e-30 136.7 73 90.4
Zm00001eb150250 Zea mays HOM05D006501 ORTHO05D008241 7.4e-29 131.3 116 65.5
QL02p031049 Quercus lobata HOM05D006501 ORTHO05D008241 9.6e-29 131.0 78 80.8
EL10Ac5g12897 Beta vulgaris HOM05D006501 ORTHO05D008241 4.8e-28 128.6 78 82.1
AUR62019819 Chenopodium quinoa HOM05D006501 ORTHO05D008241 5.3e-27 125.2 71 81.7
AUR62010820 Chenopodium quinoa HOM05D006501 ORTHO05D008241 2.6e-26 122.9 68 85.3
Ah.12g052370 Amaranthus hybridus HOM05D006501 ORTHO05D008241 3.8e-25 119.0 93 64.5
FvH4_5g04360 Fragaria vesca HOM05D006501 ORTHO05D008241 6.4e-25 118.2 107 60.7
CARHR046590 Cardamine hirsuta HOM05D006501 ORTHO05D008241 7.1e-24 114.8 84 70.2
SGA_v2.0_scaffold144G35857 Striga asiatica HOM05D006501 ORTHO05D008241 7.1e-24 114.8 127 53.5
Carub.0002s0043 Capsella rubella HOM05D006501 ORTHO05D008241 2.1e-23 113.2 72 76.4
Thhalv10023703m.g Eutrema salsugineum HOM05D006501 ORTHO05D008241 2.1e-23 113.2 72 76.4
SEGI_03665 Sequoiadendron giganteum HOM05D006501 ORTHO05D008241 1.3e-20 104.0 69 72.5
Lj2C170T10 Lonicera japonica HOM05D006501 ORTHO05D008241 1.5e-18 97.1 60 76.7
CBR_g30621 Chara braunii HOM05D006501 ORTHO05D008241 4.5e-18 95.5 61 75.4
Ah.12g052380 Amaranthus hybridus HOM05D006501 ORTHO05D008241 6.5e-17 91.7 65 67.7
MCO03G553 Micromonas commoda HOM05D005851 ORTHO05D007137 1.2e-15 87.4 104 51.0
Atru.chr9.2021 Acer truncatum HOM05D006501 ORTHO05D008241 3.5e-15 85.9 125 50.4
ECA233G1307 Erigeron canadensis HOM05D006501 ORTHO05D008241 1.1e-13 80.9 49 75.5
PRCOL_00002729 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 3.3e-13 79.3 95 50.5
PRCOL_00005435 Prasinoderma coloniale HOM05D005851 ORTHO05D007137 1.4e-11 73.9 114 37.7
RcHm_v2.0_Chr6g0301591 Rosa chinensis HOM05D001075 ORTHO05D008241 5.9e-10 68.6 58 67.2
MCO14G091 Micromonas commoda HOM05D005851 ORTHO05D007137 8.5e-09 64.7 92 41.3


User provided reference genes

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