Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 0.0e+00 1985.3 1260 100.0
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 0.0e+00 1738.0 1245 87.1
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 9.9e-234 814.7 1307 57.8
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 5.6e-229 798.9 1399 53.1
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 1.2e-210 738.0 1267 54.8
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 6.5e-201 705.7 1498 48.1
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 5.5e-192 676.0 1353 50.6
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 2.8e-188 663.7 1318 47.8
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 2.0e-186 657.5 1094 52.7
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 1.0e-174 618.6 1356 48.7
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 6.3e-172 609.4 1370 48.0
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 5.0e-161 573.2 1323 46.6
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 3.3e-160 570.5 1354 48.1
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 3.5e-154 550.4 722 47.8
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 3.5e-154 550.4 1428 45.4
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 9.9e-149 532.3 1375 46.5
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 2.2e-148 531.2 1360 44.6
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 3.5e-146 523.9 1361 43.4
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 3.1e-142 510.8 1368 45.8
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 3.1e-142 510.8 1368 45.8
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 1.1e-139 502.3 1316 46.6
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.2e-138 498.8 1342 43.9
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 8.7e-137 492.7 1447 43.7
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 2.8e-135 487.6 769 43.0
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 8.1e-135 486.1 1383 34.6
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.1e-134 485.7 1364 37.8
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 3.8e-132 477.2 1391 42.3
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 2.1e-127 461.5 1370 39.6
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 2.6e-125 454.5 1371 34.1
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 1.1e-123 449.1 1392 43.6
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 4.2e-123 447.2 843 40.8
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.6e-119 435.3 704 42.2
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 1.4e-118 432.2 1392 33.7
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 2.4e-118 431.4 640 44.2
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 1.9e-115 421.8 1526 39.8
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 5.1e-113 413.7 1356 33.0
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 6.9e-110 403.3 823 36.6
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.2e-106 392.5 1368 30.6
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 9.0e-102 376.3 1368 33.6
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 5.1e-97 360.5 1294 35.9
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 5.7e-96 357.1 861 33.8
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 1.7e-95 355.5 814 35.4
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.4e-94 352.4 1335 39.3
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 7.7e-93 346.7 842 35.3
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 1.7e-92 345.5 831 34.3
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 2.9e-92 344.7 870 34.0
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.4e-89 335.9 848 34.1
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 8.8e-89 333.2 824 33.3
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 4.4e-88 330.9 979 46.0
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 2.2e-87 328.6 835 33.9
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 2.4e-86 325.1 849 34.9
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 3.5e-85 321.2 842 33.3
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 4.5e-85 320.9 849 32.4
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 7.7e-85 320.1 853 33.2
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 1.0e-84 319.7 1406 28.5
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 6.5e-84 317.0 829 33.5
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 6.5e-84 317.0 893 31.7
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 1.1e-83 316.2 809 31.9
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 1.9e-83 315.5 828 32.9
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 2.5e-83 315.1 850 33.1
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 4.2e-83 314.3 823 33.9
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 2.7e-82 311.6 678 35.7
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 3.6e-82 311.2 836 32.7
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 4.7e-82 310.8 611 36.5
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 1.0e-81 309.7 829 33.2
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 1.0e-81 309.7 780 35.3
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 2.3e-81 308.5 834 33.5
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 1.1e-80 306.2 775 33.8
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 1.5e-80 305.8 1314 35.6
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 1.5e-80 305.8 678 35.7
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.5e-80 305.8 835 32.0
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 3.3e-80 304.7 712 34.1
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 7.4e-80 303.5 825 32.4
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 2.2e-79 302.0 835 32.2
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.8e-79 301.6 840 32.7
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 4.8e-79 300.8 848 32.0
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 8.2e-79 300.1 835 31.9
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 1.8e-78 298.9 822 33.0
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 7.0e-78 297.0 834 32.6
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 1.3e-76 292.7 822 33.3
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.3e-76 292.7 854 32.0
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 2.2e-76 292.0 1130 30.3
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 2.9e-76 291.6 832 32.7
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 1.1e-75 289.7 829 31.7
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 1.9e-75 288.9 841 31.3
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 2.1e-74 285.4 813 32.3
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 8.0e-74 283.5 839 32.2
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 5.2e-73 280.8 842 31.5
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 2.0e-72 278.9 1131 30.0
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.6e-72 278.5 835 31.6
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 2.6e-72 278.5 827 32.6
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 5.7e-72 277.3 823 31.5
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.7e-71 275.8 826 32.0
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.7e-71 275.8 830 31.9
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 2.2e-71 275.4 866 30.0
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 4.8e-71 274.2 849 31.2
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 8.3e-71 273.5 841 31.2
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 8.3e-71 273.5 841 31.2
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 8.3e-71 273.5 820 33.2
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.4e-70 271.9 844 30.9
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 4.1e-70 271.2 773 32.2
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 2.0e-69 268.9 841 29.8
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 1.0e-68 266.5 859 31.3
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 6.5e-68 263.8 1325 28.2
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 1.1e-67 263.1 819 30.0
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 2.5e-67 261.9 818 31.5
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 2.7e-66 258.5 830 30.5
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 1.0e-65 256.5 691 31.4
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 1.8e-65 255.8 838 30.3
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 5.2e-65 254.2 834 31.4
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 2.0e-64 252.3 815 29.8
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 2.2e-63 248.8 817 29.6
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 2.0e-61 242.3 846 30.4
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 7.7e-61 240.4 701 32.0
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 1.3e-60 239.6 809 31.1
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 5.0e-60 237.7 704 31.2
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 7.2e-59 233.8 722 32.5
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 9.5e-59 233.4 453 36.4
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 1.6e-58 232.6 810 30.9
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 6.1e-58 230.7 763 31.6
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 1.3e-55 223.0 850 28.4
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 3.7e-55 221.5 979 40.6
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 8.3e-55 220.3 826 28.6
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 2.7e-53 215.3 606 31.7
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 4.6e-53 214.5 486 35.0
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 5.9e-53 214.2 557 33.9
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 2.3e-52 212.2 904 29.0
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 8.6e-52 210.3 1363 30.0
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.1e-51 209.9 490 35.1
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 1.5e-51 209.5 806 29.8
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 1.5e-51 209.5 595 32.6
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 1.6e-50 206.1 485 34.6
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 2.1e-50 205.7 490 32.4
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 2.8e-50 205.3 1318 31.1
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 5.2e-49 201.1 653 29.2
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 4.4e-48 198.0 702 29.1
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 5.8e-48 197.6 687 28.8
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 7.5e-48 197.2 620 29.0
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 4.9e-47 194.5 691 29.7
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 3.2e-46 191.8 636 31.1
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 1.0e-44 186.8 717 27.9
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 6.6e-44 184.1 612 29.9
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 6.6e-44 184.1 714 28.2
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 1.1e-41 176.8 600 31.2
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 6.8e-41 174.1 458 32.3
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 9.8e-40 170.2 1278 31.5
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.2e-37 163.3 635 28.0
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 3.3e-35 155.2 601 30.3
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 5.6e-35 154.5 680 26.6
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 1.8e-33 149.4 1298 29.0
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 1.7e-31 142.9 846 28.0
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 8.4e-31 140.6 487 32.6
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 1.7e-28 132.9 698 25.8
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 9.6e-27 127.1 802 27.1
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 1.9e-22 112.8 644 26.6
vmacro11360 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 5.3e-17 94.7 375 33.1
vmacro11466 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.0e-16 92.8 342 34.5
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 3.4e-16 92.0 334 29.0
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.7e-13 82.4 146 34.9
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.7e-13 82.4 146 34.9
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 6.6e-12 77.8 668 25.7
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.2e-08 67.0 310 31.0
unitig_0.g2843 Utricularia gibba HOM05D047057 ORTHO05D004714 3.4e-08 65.5 272 27.6
HanXRQChr07g0190851 Helianthus annuus HOM05D003962 ORTHO05D004714 2.2e-07 62.8 241 32.4
TAR629G3239 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.4e-06 60.1 183 38.8


User provided reference genes

Program Settings