Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002941g0070 Nicotiana tabacum HOM05D008483 ORTHO05D010726 2.6e-147 526.9 256 100.0
Nitab4.5_0000030g0110 Nicotiana tabacum HOM05D008483 ORTHO05D010726 2.4e-124 450.7 227 95.2
Cc08_g05050 Coffea canephora HOM05D008483 ORTHO05D010726 4.4e-70 270.4 228 56.1
CSS0019242 Camellia sinensis var. sinensis HOM05D008483 ORTHO05D010726 1.2e-64 252.3 218 56.4
CSS0039397 Camellia sinensis var. sinensis HOM05D008483 ORTHO05D010726 1.2e-64 252.3 218 56.4
Oeu019187.1 Olea europaea HOM05D008483 ORTHO05D010726 3.5e-51 207.6 198 49.5
Hma1.2p1_1933F.1_g308065 Hydrangea macrophylla HOM05D008483 ORTHO05D010726 1.4e-47 195.7 210 48.6
Lsat_1_v5_gn_3_23061 Lactuca sativa HOM05D008483 ORTHO05D010726 9.9e-46 189.5 207 45.9
DCAR_008181 Daucus carota HOM05D008483 ORTHO05D010726 2.2e-45 188.3 185 45.9
Rhsim12G0158300 Rhododendron simsii HOM05D008483 ORTHO05D010726 4.2e-44 184.1 181 48.6
Actinidia18161 Actinidia chinensis HOM05D008483 ORTHO05D010726 7.4e-41 173.3 221 43.4
Potri.015G036400 Populus trichocarpa HOM05D008483 ORTHO05D010726 1.6e-40 172.2 227 40.5
GSVIVG01022790001 Vitis vinifera HOM05D008483 ORTHO05D010726 8.1e-40 169.9 186 47.8
AUR62007411 Chenopodium quinoa HOM05D008483 ORTHO05D010726 1.4e-39 169.1 193 42.0
Cfa012968 Carpinus fangiana HOM05D008483 ORTHO05D010726 4.5e-38 164.1 191 43.5
Haze_21313 Corylus avellana HOM05D003774 ORTHO05D009174 5.8e-38 163.7 224 39.7
HanXRQChr17g0536561 Helianthus annuus HOM05D008483 ORTHO05D010726 7.6e-38 163.3 199 43.2
AUR62027321 Chenopodium quinoa HOM05D008483 ORTHO05D010726 3.8e-37 161.0 186 41.4
MBI16_g32672_MAGBIO Magnolia biondii HOM05D008483 ORTHO05D010726 2.4e-36 158.3 190 41.6
MD12G1033400 Malus domestica HOM05D008483 ORTHO05D010726 4.2e-36 157.5 195 44.1
Prupe.1G555500 Prunus persica HOM05D008483 ORTHO05D010726 4.6e-35 154.1 187 43.3
Nn8g41093 Nelumbo nucifera HOM05D008483 ORTHO05D010726 1.0e-34 152.9 193 39.4
Hma1.2p1_0560F.1_g178890 Hydrangea macrophylla HOM05D008483 ORTHO05D010726 3.0e-34 151.4 179 46.4
Prupe.1G569400 Prunus persica HOM05D008483 ORTHO05D010726 1.5e-33 149.1 183 42.6
Cpa.g.sc137.16 Carica papaya HOM05D008483 ORTHO05D010726 1.3e-32 146.0 229 36.2
ECA246G3844 Erigeron canadensis HOM05D008483 ORTHO05D010726 2.8e-32 144.8 176 37.5
Sabra15G0030100 Salix brachista HOM05D008483 ORTHO05D010726 3.7e-32 144.4 211 37.4
Duzib213G0258 Durio zibethinus HOM05D008483 ORTHO05D010726 8.2e-32 143.3 211 38.4
EL10Ac5g11926 Beta vulgaris HOM05D008483 ORTHO05D010726 1.1e-31 142.9 185 38.9
Sabra15G0031000 Salix brachista HOM05D008483 ORTHO05D010726 1.1e-31 142.9 211 37.4
Thecc.07G080600 Theobroma cacao HOM05D008483 ORTHO05D010726 1.4e-31 142.5 242 36.8
TAR381G0371 Trochodendron aralioides HOM05D008483 ORTHO05D010726 2.5e-28 131.7 175 41.1
MBI13_g10040_MAGBIO Magnolia biondii HOM05D008483 ORTHO05D010726 3.5e-27 127.9 180 40.6
TWI60G0009 Tripterygium wilfordii HOM05D008483 ORTHO05D010726 2.3e-26 125.2 218 33.5
Aa31LG2G14190 Aethionema arabicum HOM05D008483 ORTHO05D010726 8.7e-26 123.2 230 33.0
THA.LOC104812723 Tarenaya hassleriana HOM05D008483 ORTHO05D010726 8.7e-26 123.2 228 33.3
AT1G31840 Arabidopsis thaliana HOM05D008483 ORTHO05D010726 2.5e-25 121.7 234 33.3
Eucgr.A00288 Eucalyptus grandis HOM05D008483 ORTHO05D010726 5.7e-25 120.6 218 34.9
Gohir.A01G064800 Gossypium hirsutum HOM05D008483 ORTHO05D010726 2.1e-24 118.6 184 35.9
Gohir.D01G051900 Gossypium hirsutum HOM05D008483 ORTHO05D010726 2.1e-24 118.6 184 35.9
Gorai.002G071800 Gossypium raimondii HOM05D008483 ORTHO05D010726 8.2e-24 116.7 184 35.3
Sp1g27550 Schrenkiella parvula HOM05D008483 ORTHO05D010726 1.4e-23 115.9 232 31.5
Carub.0001s3017 Capsella rubella HOM05D008483 ORTHO05D010726 1.5e-22 112.5 216 32.4
Ciclev10013671m.g Citrus clementina HOM05D008483 ORTHO05D010726 1.5e-22 112.5 188 37.2
Ciclev10003653m.g Citrus clementina HOM05D008483 ORTHO05D010726 4.5e-22 110.9 188 36.7
Thhalv10009444m.g Eutrema salsugineum HOM05D008483 ORTHO05D010726 2.5e-17 95.1 191 30.4
RcHm_v2.0_Chr2g0139321 Rosa chinensis HOM05D008483 ORTHO05D010726 2.4e-15 88.6 180 33.3
AL1G45930 Arabidopsis lyrata HOM05D008483 ORTHO05D010726 4.1e-15 87.8 121 38.0
ATR1089G063 Amborella trichopoda HOM05D008483 ORTHO05D010726 2.9e-13 81.6 158 30.4
Ca_02053_v3 Cicer arietinum L. HOM05D006842 ORTHO05D008908 1.4e-10 72.8 98 34.7
TPR.G30782 Trifolium pratense HOM05D006842 ORTHO05D008908 1.8e-10 72.4 97 34.0
Medtr2g037740 Medicago truncatula HOM05D006842 ORTHO05D008908 3.0e-10 71.6 97 34.0
Psat1g144960 Pisum sativum HOM05D006842 ORTHO05D008908 1.1e-09 69.7 97 34.0
Lj6g0009672 Lotus japonicus HOM05D006842 ORTHO05D008908 2.0e-09 68.9 97 33.0
Lsat_1_v5_gn_9_17361 Lactuca sativa HOM05D008810 ORTHO05D010971 2.6e-09 68.6 98 35.7
SGA_v2.0_scaffold8G04573 Striga asiatica HOM05D000424 ORTHO05D002854 4.4e-09 67.8 229 21.8
Phvul.009G237200 Phaseolus vulgaris HOM05D006842 ORTHO05D008908 7.4e-09 67.0 96 32.3
SMO352G0069 Selaginella moellendorffii HOM05D005622 ORTHO05D002854 7.4e-09 67.0 179 24.6
Cfa018952 Carpinus fangiana HOM05D002453 ORTHO05D002107 9.7e-09 66.6 222 27.9
arahy.Tifrunner.gnm1.ann1.0YDK6Q Arachis hypogaea HOM05D006842 ORTHO05D008908 1.7e-08 65.9 96 32.3
arahy.Tifrunner.gnm1.ann1.25Z6GM Arachis hypogaea HOM05D006842 ORTHO05D008908 1.7e-08 65.9 96 32.3
Glyma.15G164700 Glycine max HOM05D006842 ORTHO05D008908 1.7e-08 65.9 89 33.7
Sc11g0002770 Simmondsia chinensis HOM05D007570 ORTHO05D009365 1.7e-08 65.9 268 26.5
Psat5g195760 Pisum sativum HOM05D006888 ORTHO05D008371 2.8e-08 65.1 235 23.8
Lalb_Chr11g0074851 Lupinus albus HOM05D006842 ORTHO05D008908 4.8e-08 64.3 96 32.3
PSO384G3049 Papaver somniferum HOM05D006842 ORTHO05D008908 6.3e-08 63.9 86 33.7
Actinidia14742 Actinidia chinensis HOM05D008483 ORTHO05D018225 8.2e-08 63.5 63 50.8
Eucgr.D01013 Eucalyptus grandis HOM05D006842 ORTHO05D008908 8.2e-08 63.5 97 32.0
HanXRQChr08g0232341 Helianthus annuus HOM05D008810 ORTHO05D010971 1.1e-07 63.2 98 32.7
VMungo1309G0481 Vigna mungo HOM05D006842 ORTHO05D008908 1.1e-07 63.2 96 30.2
Gohir.A08G017700 Gossypium hirsutum HOM05D006842 ORTHO05D008908 1.8e-07 62.4 95 30.5
ECA247G3188 Erigeron canadensis HOM05D008810 ORTHO05D010971 2.4e-07 62.0 88 31.8
Gohir.D08G028300 Gossypium hirsutum HOM05D006842 ORTHO05D008908 2.4e-07 62.0 95 30.5
Gorai.004G025400 Gossypium raimondii HOM05D006842 ORTHO05D008908 3.1e-07 61.6 95 30.5
Rhsim09G0137400 Rhododendron simsii HOM05D007426 ORTHO05D009167 3.1e-07 61.6 147 30.6
Os04g0446100 Oryza sativa ssp. japonica HOM05D006080 ORTHO05D007382 4.1e-07 61.2 183 24.0
Prupe.1G077100 Prunus persica HOM05D006842 ORTHO05D008908 4.1e-07 61.2 86 30.2
MSTRG.23026 Avicennia marina HOM05D002453 ORTHO05D002107 5.3e-07 60.8 229 23.6
CDE04G0172 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 5.3e-07 60.8 153 26.8
FvH4_4g07420 Fragaria vesca HOM05D006842 ORTHO05D008908 5.3e-07 60.8 98 28.6
FAN12G0114 Fragaria x ananassa HOM05D006842 ORTHO05D008908 5.3e-07 60.8 98 28.6
HanXRQChr03g0068361 Helianthus annuus HOM05D006842 ORTHO05D008908 5.3e-07 60.8 65 40.0
Sed0020865 Sechium edule HOM05D006842 ORTHO05D008908 5.3e-07 60.8 98 30.6
Actinidia23380 Actinidia chinensis HOM05D008810 ORTHO05D010971 6.9e-07 60.5 89 31.5
COL.COLO4_38436 Corchorus olitorius HOM05D006842 ORTHO05D008908 6.9e-07 60.5 86 33.7
PSO339G1909 Papaver somniferum HOM05D006842 ORTHO05D008908 6.9e-07 60.5 86 31.4
CDE07G1153 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 1.2e-06 59.7 102 29.4
ECA240G2145 Erigeron canadensis HOM05D006842 ORTHO05D008908 1.2e-06 59.7 86 34.9
Lsat_1_v5_gn_5_112121 Lactuca sativa HOM05D008483 ORTHO05D010726 1.2e-06 59.7 62 51.6
Haze_22005 Corylus avellana HOM05D006842 ORTHO05D008908 1.5e-06 59.3 96 30.2
Duzib170G0985 Durio zibethinus HOM05D006842 ORTHO05D008908 1.5e-06 59.3 95 29.5
FAN07G2675 Fragaria x ananassa HOM05D006842 ORTHO05D008908 1.5e-06 59.3 98 28.6
Thecc.09G184100 Theobroma cacao HOM05D006842 ORTHO05D008908 1.5e-06 59.3 80 33.8
GSVIVG01012780001 Vitis vinifera HOM05D006842 ORTHO05D008908 1.5e-06 59.3 86 32.6
ATR0618G019 Amborella trichopoda HOM05D006888 ORTHO05D008371 2.0e-06 58.9 183 27.3
AL8G33220 Arabidopsis lyrata HOM05D006842 ORTHO05D008908 2.0e-06 58.9 96 29.2
Cfa013438 Carpinus fangiana HOM05D006842 ORTHO05D008908 2.0e-06 58.9 96 30.2
Lsat_1_v5_gn_7_55601 Lactuca sativa HOM05D006842 ORTHO05D008908 2.0e-06 58.9 92 34.8
QL12p035267 Quercus lobata HOM05D006842 ORTHO05D008908 2.0e-06 58.9 98 30.6
CSS0012280 Camellia sinensis var. sinensis HOM05D006842 ORTHO05D008908 2.6e-06 58.5 97 30.9
CiPaw.16G087400 Carya illinoinensis HOM05D006842 ORTHO05D008908 2.6e-06 58.5 70 38.6
Gorai.004G065800 Gossypium raimondii HOM05D007893 ORTHO05D010042 3.4e-06 58.2 128 28.9
MD13G1243700 Malus domestica HOM05D006842 ORTHO05D008908 3.4e-06 58.2 85 30.6
PGR142G3186 Punica granatum HOM05D006842 ORTHO05D008908 4.5e-06 57.8 97 26.8
A04p13440 Brassica napus HOM05D007358 ORTHO05D009117 5.9e-06 57.4 123 25.2
Ciclev10010743m.g Citrus clementina HOM05D006842 ORTHO05D008908 5.9e-06 57.4 79 35.4
ECA234G2171 Erigeron canadensis HOM05D007426 ORTHO05D009167 5.9e-06 57.4 89 32.6
Sp6g18980 Schrenkiella parvula HOM05D006842 ORTHO05D008908 5.9e-06 57.4 99 29.3
BraA04t17002Z Brassica rapa HOM05D007358 ORTHO05D009117 7.7e-06 57.0 99 27.3
DCAR_020473 Daucus carota HOM05D006842 ORTHO05D008908 7.7e-06 57.0 95 32.6


User provided reference genes

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