Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 6.2e-97 357.5 181 100.0
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 8.8e-75 283.9 153 94.8
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 1.5e-71 273.1 214 68.7
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 1.4e-69 266.5 214 67.8
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 4.2e-69 265.0 214 67.8
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 8.8e-59 230.7 191 68.1
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 5.9e-55 218.0 208 58.7
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 1.0e-54 217.2 213 54.5
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 1.2e-52 210.3 213 52.6
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 1.6e-52 209.9 213 53.1
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.2e-50 203.8 201 59.2
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 2.0e-50 203.0 209 55.0
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 6.3e-49 198.0 213 49.8
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 8.3e-49 197.6 217 53.0
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 1.1e-48 197.2 209 54.5
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 1.4e-48 196.8 212 50.5
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 2.4e-48 196.1 213 49.8
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 4.1e-48 195.3 201 57.2
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 4.1e-48 195.3 217 50.7
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 1.6e-47 193.4 209 53.6
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 2.7e-47 192.6 207 53.1
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 4.5e-47 191.8 208 52.9
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 1.0e-46 190.7 207 51.7
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 1.0e-46 190.7 196 55.1
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 1.3e-46 190.3 206 51.5
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 1.3e-46 190.3 214 52.8
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 2.9e-46 189.1 207 51.7
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 3.8e-46 188.7 210 52.4
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 1.1e-45 187.2 208 54.8
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 1.1e-45 187.2 206 51.9
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 2.5e-45 186.0 207 54.1
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 9.5e-45 184.1 212 50.9
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 1.2e-44 183.7 211 53.1
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.2e-44 183.7 199 55.3
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 4.7e-44 181.8 216 51.4
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 6.1e-44 181.4 210 53.3
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 3.0e-43 179.1 217 50.2
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 5.2e-43 178.3 195 55.4
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 5.2e-43 178.3 213 52.1
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 6.8e-43 177.9 207 51.7
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 6.8e-43 177.9 215 51.2
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 8.9e-43 177.6 194 54.6
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 8.9e-43 177.6 206 51.9
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 1.5e-42 176.8 220 51.4
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 2.6e-42 176.0 214 51.4
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 3.4e-42 175.6 219 49.8
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 3.4e-42 175.6 215 49.8
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 3.4e-42 175.6 186 53.8
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 5.7e-42 174.9 213 51.6
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 5.7e-42 174.9 211 53.6
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 5.7e-42 174.9 205 53.7
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 9.8e-42 174.1 207 50.7
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 9.8e-42 174.1 193 54.9
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.3e-41 173.7 186 53.8
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 3.7e-41 172.2 202 54.0
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 4.9e-41 171.8 196 52.0
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 4.9e-41 171.8 206 51.9
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 8.3e-41 171.0 203 51.7
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 1.1e-40 170.6 221 50.2
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.1e-40 170.6 207 49.8
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.1e-40 170.6 195 53.8
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.1e-40 170.6 205 51.7
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 1.4e-40 170.2 202 52.0
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 1.4e-40 170.2 210 49.0
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.8e-40 169.9 186 52.7
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 2.4e-40 169.5 211 49.3
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 2.4e-40 169.5 209 50.7
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 2.4e-40 169.5 202 52.0
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 4.1e-40 168.7 222 47.3
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 1.2e-39 167.2 223 46.2
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 1.6e-39 166.8 207 48.8
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 2.0e-39 166.4 205 49.8
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 2.7e-39 166.0 209 50.2
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.5e-39 165.6 207 48.3
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 1.0e-38 164.1 217 51.2
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 1.7e-38 163.3 204 52.5
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 2.9e-38 162.5 209 48.3
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 6.6e-38 161.4 192 51.6
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 8.6e-38 161.0 221 47.5
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 1.9e-37 159.8 196 49.0
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 1.9e-37 159.8 220 46.4
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 2.5e-37 159.5 205 47.8
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 2.5e-37 159.5 205 47.3
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 3.3e-37 159.1 189 50.3
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 4.3e-37 158.7 211 47.4
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 4.3e-37 158.7 219 47.0
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 5.6e-37 158.3 164 53.0
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 5.6e-37 158.3 175 51.4
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 7.3e-37 157.9 193 51.8
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 7.3e-37 157.9 196 48.5
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 9.5e-37 157.5 205 48.3
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 1.2e-36 157.1 220 46.8
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 2.8e-36 156.0 209 46.4
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 2.8e-36 156.0 217 48.4
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 3.6e-36 155.6 197 47.2
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 4.7e-36 155.2 203 48.8
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 6.1e-36 154.8 221 45.2
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 1.4e-35 153.7 209 47.8
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 1.4e-35 153.7 215 47.0
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 1.8e-35 153.3 191 49.2
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 2.3e-35 152.9 186 52.2
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 3.1e-35 152.5 213 44.1
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 4.0e-35 152.1 205 46.3
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 5.2e-35 151.8 188 49.5
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 1.5e-34 150.2 205 45.9
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 4.4e-34 148.7 204 46.6
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 4.4e-34 148.7 204 46.6
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 7.5e-34 147.9 208 45.7
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 1.7e-33 146.7 199 45.7
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 2.2e-33 146.4 215 43.7
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 2.9e-33 146.0 209 43.1
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 3.7e-33 145.6 207 45.9
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 4.9e-33 145.2 189 47.1
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 6.4e-33 144.8 205 43.4
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 8.3e-33 144.4 205 43.9
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 1.9e-32 143.3 208 45.2
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 3.2e-32 142.5 192 45.3
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 3.2e-32 142.5 207 48.8
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 9.2e-32 141.0 208 43.8
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 1.2e-31 140.6 208 43.8
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 1.2e-31 140.6 198 47.0
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 1.6e-31 140.2 241 38.2
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.6e-31 140.2 210 46.7
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 1.0e-30 137.5 158 49.4
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 2.3e-30 136.3 208 43.3
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 3.0e-30 136.0 197 46.2
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 5.0e-30 135.2 192 44.8
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 5.0e-30 135.2 195 44.6
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 5.0e-30 135.2 192 44.8
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 1.1e-29 134.0 209 45.0
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 3.3e-29 132.5 194 45.9
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 4.3e-29 132.1 228 43.4
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 5.6e-29 131.7 195 44.6
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 2.8e-28 129.4 193 44.0
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 1.1e-27 127.5 184 46.2
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 1.8e-27 126.7 217 45.2
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 2.3e-27 126.3 282 34.8
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 2.3e-27 126.3 210 40.5
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 5.2e-27 125.2 184 44.0
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 2.0e-26 123.2 195 43.6
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 4.4e-26 122.1 210 41.4
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 1.7e-25 120.2 193 46.1
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 1.7e-25 120.2 146 47.9
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 6.4e-25 118.2 197 43.1
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 1.1e-24 117.5 168 44.0
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 1.9e-24 116.7 179 44.7
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 9.2e-24 114.4 217 42.9
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 3.5e-23 112.5 163 46.6
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 1.9e-21 106.7 189 40.7
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 7.3e-21 104.8 164 44.5
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 9.5e-21 104.4 189 41.8
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 4.0e-19 99.0 200 39.5
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 1.5e-18 97.1 144 43.1
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 3.4e-18 95.9 177 41.8
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 3.4e-18 95.9 181 41.4
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 1.3e-17 94.0 191 38.7
VMungo1383G2032 Vigna mungo HOM05D004016 ORTHO05D004732 1.2e-15 87.4 102 50.0
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 3.0e-14 82.8 82 57.3
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 1.9e-13 80.1 67 58.2
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 6.2e-12 75.1 69 55.1
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 1.4e-11 73.9 99 48.5
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 3.4e-10 69.3 60 61.7
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 1.7e-09 67.0 79 50.6
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 1.9e-08 63.5 46 63.0
VMungo0540G2292 Vigna mungo HOM05D004016 ORTHO05D004732 1.6e-07 60.5 69 49.3
SEGI_04941 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 2.7e-07 59.7 86 46.5
Mapoly0128s0012 Marchantia polymorpha HOM05D004016 ORTHO05D004732 3.5e-07 59.3 100 44.0
SMO134G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 3.0e-06 56.2 89 46.1


User provided reference genes

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