Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002923g0020 Nicotiana tabacum HOM05D005746 ORTHO05D007105 0.0e+00 4370.1 2187 100.0
Peaxi162Scf00451g00821 Petunia axillaris HOM05D005746 ORTHO05D007105 0.0e+00 3704.1 2204 84.5
CAN.G1205.1 Capsicum annuum HOM05D005746 ORTHO05D007105 0.0e+00 3678.3 2197 84.3
Sopen03g014980 Solanum pennellii HOM05D005746 ORTHO05D007105 0.0e+00 3639.7 2198 84.0
Solyc03g062650.3 Solanum lycopersicum HOM05D005746 ORTHO05D007105 0.0e+00 3629.7 2198 83.6
Dinv33748 Davidia involucrata HOM05D005746 ORTHO05D007105 0.0e+00 2824.7 2236 65.3
CSS0043134 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2735.3 2234 64.1
Cc07_g03290 Coffea canephora HOM05D005746 ORTHO05D007105 0.0e+00 2723.3 2217 63.6
CSS0009890 Camellia sinensis var. sinensis HOM05D005746 ORTHO05D007105 0.0e+00 2686.8 2233 63.4
Actinidia06086 Actinidia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2686.0 2230 62.7
Oeu060938.1 Olea europaea HOM05D005746 ORTHO05D007105 0.0e+00 2680.2 2247 62.4
Rhsim10G0040100 Rhododendron simsii HOM05D005746 ORTHO05D007105 0.0e+00 2678.3 2249 62.3
vmacro05704 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2667.9 2231 62.5
vmacro17103 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2654.4 2231 62.3
MSTRG.3234 Avicennia marina HOM05D005746 ORTHO05D007105 0.0e+00 2633.2 2230 61.5
Cfa007537 Carpinus fangiana HOM05D005746 ORTHO05D007105 0.0e+00 2619.3 2227 61.0
Haze_14549 Corylus avellana HOM05D005746 ORTHO05D007105 0.0e+00 2617.4 2225 61.0
Migut.H00912 Erythranthe guttata HOM05D005746 ORTHO05D007105 0.0e+00 2607.0 2234 61.1
QL02p081653 Quercus lobata HOM05D005746 ORTHO05D007105 0.0e+00 2606.6 2237 60.7
CiPaw.03G027900 Carya illinoinensis HOM05D005746 ORTHO05D007105 0.0e+00 2593.9 2230 61.0
TAR374G0083 Trochodendron aralioides HOM05D005746 ORTHO05D007105 0.0e+00 2589.3 2240 60.6
Atru.chr8.140 Acer truncatum HOM05D005746 ORTHO05D007105 0.0e+00 2587.8 2232 60.7
DCAR_021658 Daucus carota HOM05D005746 ORTHO05D007105 0.0e+00 2578.1 2221 60.6
Duzib147G0034 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 2575.0 2235 60.2
MD09G1049900 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2571.6 2238 59.6
MD17G1050300 Malus domestica HOM05D005746 ORTHO05D007105 0.0e+00 2558.9 2233 59.2
TWI34G0228 Tripterygium wilfordii HOM05D005746 ORTHO05D007105 0.0e+00 2553.1 2238 59.6
vmacro05746 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2542.7 2231 60.3
RcHm_v2.0_Chr2g0168711 Rosa chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2536.9 2220 59.1
Potri.004G128601 Populus trichocarpa HOM05D005746 ORTHO05D007105 0.0e+00 2533.4 2247 59.3
COL.COLO4_33291 Corchorus olitorius HOM05D005746 ORTHO05D007105 0.0e+00 2531.9 2231 59.7
Gohir.A09G017100 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 2524.2 2229 59.5
Gorai.006G018000 Gossypium raimondii HOM05D005746 ORTHO05D007105 0.0e+00 2524.2 2231 59.5
Nn4g23132 Nelumbo nucifera HOM05D005746 ORTHO05D007105 0.0e+00 2511.1 2209 59.7
SGA_v2.0_scaffold1G00328 Striga asiatica HOM05D005746 ORTHO05D007105 0.0e+00 2506.1 2232 59.3
FvH4_6g48870 Fragaria vesca HOM05D005746 ORTHO05D007105 0.0e+00 2497.2 2213 58.6
Sabra04G0090500 Salix brachista HOM05D005746 ORTHO05D007105 0.0e+00 2482.2 2236 58.1
FAN02G0556 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2479.1 2215 57.8
Sc14g0005950 Simmondsia chinensis HOM05D005746 ORTHO05D007105 0.0e+00 2458.3 2240 58.3
MELO3C009878.2 Cucumis melo HOM05D005746 ORTHO05D007105 0.0e+00 2450.6 2232 57.9
Lj2g0006836 Lotus japonicus HOM05D005746 ORTHO05D007105 0.0e+00 2446.4 2235 57.6
HanXRQChr14g0439111 Helianthus annuus HOM05D005746 ORTHO05D007105 0.0e+00 2440.6 2229 58.8
arahy.Tifrunner.gnm1.ann1.C4FZ3V Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2439.5 2237 57.7
Hund15611 Selenicereus undatus HOM05D005746 ORTHO05D007105 0.0e+00 2438.3 2225 57.8
ClCG10G014980 Citrullus lanatus HOM05D005746 ORTHO05D007105 0.0e+00 2430.2 2225 57.8
arahy.Tifrunner.gnm1.ann1.IK9RDG Arachis hypogaea HOM05D005746 ORTHO05D007105 0.0e+00 2427.9 2236 57.3
ECA246G0262 Erigeron canadensis HOM05D005746 ORTHO05D007105 0.0e+00 2425.6 2220 58.6
Aqoxy3G00678 Aquilegia oxysepala HOM05D005746 ORTHO05D007105 0.0e+00 2420.6 2240 57.9
Sed0005323 Sechium edule HOM05D005746 ORTHO05D007105 0.0e+00 2409.0 2225 57.4
Eucgr.J01361 Eucalyptus grandis HOM05D005746 ORTHO05D007105 0.0e+00 2407.5 2233 57.2
Glyma.19G021700 Glycine max HOM05D005746 ORTHO05D007105 0.0e+00 2405.2 2220 57.0
Lalb_Chr06g0175391 Lupinus albus HOM05D005746 ORTHO05D007105 0.0e+00 2400.2 2237 56.4
VMungo0464G0495 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 2399.0 2224 57.5
PGR083G2853 Punica granatum HOM05D005746 ORTHO05D007105 0.0e+00 2394.4 2211 57.1
TPR.G10375 Trifolium pratense HOM05D005746 ORTHO05D007105 0.0e+00 2392.5 2233 57.1
THA.LOC104823176 Tarenaya hassleriana HOM05D005746 ORTHO05D007105 0.0e+00 2390.1 2232 57.0
Ca_04277_v3 Cicer arietinum L. HOM05D005746 ORTHO05D007105 0.0e+00 2389.8 2240 57.1
MBI05_g35450_MAGBIO Magnolia biondii HOM05D005746 ORTHO05D007105 0.0e+00 2386.3 2257 56.9
Phvul.004G028000 Phaseolus vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2377.8 2213 57.0
AUR62034394 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2376.3 2239 57.5
Psat1g074560 Pisum sativum HOM05D005746 ORTHO05D007105 0.0e+00 2375.9 2224 57.2
PSO017G1620 Papaver somniferum HOM05D005746 ORTHO05D007105 0.0e+00 2371.7 2234 56.7
Medtr6g011760 Medicago truncatula HOM05D005746 ORTHO05D007105 0.0e+00 2363.2 2224 57.0
AUR62039819 Chenopodium quinoa HOM05D005746 ORTHO05D007105 0.0e+00 2361.3 2238 57.0
EL10Ac2g02971 Beta vulgaris HOM05D005746 ORTHO05D007105 0.0e+00 2357.0 2227 57.4
Ciclev10010889m.g Citrus clementina HOM05D005746 ORTHO05D007105 0.0e+00 2317.7 2239 55.6
Lsat_1_v5_gn_3_100801 Lactuca sativa HOM05D005746 ORTHO05D007105 0.0e+00 2312.3 2232 56.9
Aa31LG2G4330 Aethionema arabicum HOM05D005746 ORTHO05D007105 0.0e+00 2295.0 2248 55.3
AT3G55160 Arabidopsis thaliana HOM05D005746 ORTHO05D007105 0.0e+00 2276.5 2212 55.7
AL5G36280 Arabidopsis lyrata HOM05D005746 ORTHO05D007105 0.0e+00 2272.7 2212 55.4
Sp2g17500 Schrenkiella parvula HOM05D005746 ORTHO05D007105 0.0e+00 2268.0 2212 55.3
C07p37790 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2261.1 2212 55.4
BolC7t44300H Brassica oleracea HOM05D005746 ORTHO05D007105 0.0e+00 2261.1 2212 55.4
A06p40280 Brassica napus HOM05D005746 ORTHO05D007105 0.0e+00 2259.2 2210 55.5
BraA06t26946Z Brassica rapa HOM05D005746 ORTHO05D007105 0.0e+00 2259.2 2210 55.5
Thhalv10003503m.g Eutrema salsugineum HOM05D005746 ORTHO05D007105 0.0e+00 2254.6 2213 55.5
CARHR165190 Cardamine hirsuta HOM05D005746 ORTHO05D007105 0.0e+00 2253.0 2211 55.4
vmacro22549 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 2222.6 2312 53.4
Prupe.3G268800 Prunus persica HOM05D005746 ORTHO05D007105 0.0e+00 2153.6 1826 60.8
FAN09G1953 Fragaria x ananassa HOM05D005746 ORTHO05D007105 0.0e+00 2153.3 1907 58.0
Thecc.04G080100 Theobroma cacao HOM05D005746 ORTHO05D007105 0.0e+00 2151.7 1825 61.0
BcaC06g33649 Brassica carinata HOM05D005746 ORTHO05D007105 0.0e+00 2147.1 2209 53.5
Manes.15G175000 Manihot esculenta HOM05D005746 ORTHO05D007105 0.0e+00 2145.9 1830 61.0
ATR0564G261 Amborella trichopoda HOM05D005746 ORTHO05D007105 0.0e+00 2100.5 2338 50.3
Carub.0005s2180 Capsella rubella HOM05D005746 ORTHO05D007105 0.0e+00 2095.9 2040 56.1
Zm00001eb414960 Zea mays HOM05D005746 ORTHO05D007105 0.0e+00 2080.4 2230 51.5
HPP92_011243 Vanilla planifolia HOM05D005746 ORTHO05D007105 0.0e+00 2038.5 2213 51.1
Gohir.D09G015800 Gossypium hirsutum HOM05D005746 ORTHO05D007105 0.0e+00 1995.3 1718 60.7
GSVIVG01011388001 Vitis vinifera HOM05D005746 ORTHO05D007105 0.0e+00 1882.8 2198 49.4
SEGI_38380 Sequoiadendron giganteum HOM05D005746 ORTHO05D007105 0.0e+00 1779.6 2387 43.9
Cpa.g.sc14.10 Carica papaya HOM05D005746 ORTHO05D007105 0.0e+00 1728.0 1417 63.8
Os08g0169700 Oryza sativa ssp. japonica HOM05D005746 ORTHO05D007105 0.0e+00 1584.7 1703 51.7
Lju41C18T12 Lonicera japonica HOM05D005746 ORTHO05D007105 0.0e+00 1563.1 1395 60.2
unitig_0.g531 Utricularia gibba HOM05D005746 ORTHO05D007105 0.0e+00 1467.6 2177 41.7
Mapoly0207s0007 Marchantia polymorpha HOM05D005746 ORTHO05D007105 0.0e+00 1460.3 2357 39.9
Pp3c6_28730 Physcomitrium patens HOM05D005746 ORTHO05D007105 0.0e+00 1416.4 2356 38.3
SMO367G0809 Selaginella moellendorffii HOM05D005746 ORTHO05D007105 0.0e+00 1317.0 2266 37.6
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 0.0e+00 1263.8 1104 60.1
CsaV3_3G041540 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1197.2 1016 60.4
CsaV3_3G041530 Cucumis sativus L. HOM05D005746 ORTHO05D007105 0.0e+00 1184.1 1208 53.7
vmacro05484 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 0.0e+00 1140.6 1066 57.4
Duzib147G0404 Durio zibethinus HOM05D005746 ORTHO05D007105 0.0e+00 1099.0 936 61.4
CDE09G0909 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 0.0e+00 1088.2 1422 45.5
Lju41A18T48 Lonicera japonica HOM05D005746 ORTHO05D007105 5.9e-274 949.1 786 63.7
vmacro05485 Vaccinium macrocarpon HOM05D005746 ORTHO05D007105 1.3e-265 921.4 1006 52.5
CBR_g50021 Chara braunii HOM05D005746 ORTHO05D007105 2.4e-259 900.6 3220 27.1
AagrBONN_evm.TU.Sc2ySwM_369.379 Anthoceros agrestis HOM05D005746 ORTHO05D007105 4.6e-218 763.5 1375 37.7
BcaNung05131 Brassica carinata HOM05D005746 ORTHO05D007105 4.6e-218 763.5 869 48.2
CDE09G1403 Ceratophyllum demersum HOM05D005746 ORTHO05D007105 8.4e-204 716.1 715 55.5
BcaC06g33650 Brassica carinata HOM05D005746 ORTHO05D007105 3.8e-172 610.9 1005 40.2
MCO11G207 Micromonas commoda HOM05D005746 ORTHO05D007105 1.3e-161 575.9 2478 25.9
Cpa.g.sc14.9 Carica papaya HOM05D005746 ORTHO05D007105 1.8e-126 459.1 455 49.5
CAN.G284.10 Capsicum annuum HOM05D005746 ORTHO05D007105 2.2e-103 382.5 318 66.4
CAN.G691.2 Capsicum annuum HOM05D005746 ORTHO05D007105 2.2e-95 355.9 304 63.8
Gohir.D09G015833 Gossypium hirsutum HOM05D005746 ORTHO05D007105 2.2e-95 355.9 370 53.2
CAN.G525.35 Capsicum annuum HOM05D005746 ORTHO05D007105 4.4e-88 331.6 234 74.8
CAN.G65.185 Capsicum annuum HOM05D005746 ORTHO05D007105 1.1e-86 327.0 309 59.9
CAN.G697.12 Capsicum annuum HOM05D005746 ORTHO05D007105 2.4e-78 299.3 216 72.7
Migut.L00530 Erythranthe guttata HOM05D005746 ORTHO05D007105 5.8e-72 278.1 761 28.9
CARHR159400 Cardamine hirsuta HOM05D005746 ORTHO05D007105 8.4e-71 274.2 290 54.8
CAN.G352.19 Capsicum annuum HOM05D005746 ORTHO05D007105 2.5e-67 262.7 262 57.3
CsaV3_UNG114880 Cucumis sativus L. HOM05D005746 ORTHO05D007105 1.4e-49 203.8 176 65.9
CAN.G385.2 Capsicum annuum HOM05D005746 ORTHO05D007105 1.8e-49 203.4 216 55.1
CAN.G853.24 Capsicum annuum HOM05D005746 ORTHO05D007105 1.5e-43 183.7 137 70.8
Lj2g0022018 Lotus japonicus HOM05D005746 ORTHO05D007105 2.6e-40 172.9 142 63.4
VMungo1127G1036 Vigna mungo HOM05D005746 ORTHO05D007105 4.4e-35 155.6 103 76.7
Gohir.A11G290200 Gossypium hirsutum HOM05D005746 ORTHO05D007105 3.6e-29 136.0 114 56.1
AagrBONN_evm.TU.Sc2ySwM_369.378 Anthoceros agrestis HOM05D005746 ORTHO05D007105 5.2e-28 132.1 474 25.9
Cre15.g642050 Chlamydomonas reinhardtii HOM05D005746 ORTHO05D007105 4.8e-26 125.6 252 33.7
VMungo1127G1975 Vigna mungo HOM05D005746 ORTHO05D007105 8.5e-23 114.8 106 57.5
VMungo0331G1774 Vigna mungo HOM05D005746 ORTHO05D007105 1.9e-22 113.6 97 59.8
AagrBONN_evm.TU.Sc2ySwM_369.374 Anthoceros agrestis HOM05D005746 ORTHO05D007105 1.2e-11 77.8 100 39.0
Cfa022176 Carpinus fangiana HOM05D005746 ORTHO05D125765 7.7e-08 65.1 560 19.5


User provided reference genes

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