Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002908g0110 Nicotiana tabacum HOM05D003294 ORTHO05D017749 1.5e-59 235.0 594 100.0
Nitab4.5_0001049g0140 Nicotiana tabacum HOM05D003294 ORTHO05D004060 3.0e-31 141.0 352 74.4
Peaxi162Scf00286g00022 Petunia axillaris HOM05D003294 ORTHO05D004060 3.6e-24 117.5 75 74.7
CAN.G710.61 Capsicum annuum HOM05D003294 ORTHO05D004060 1.8e-15 88.6 82 68.3
CAN.G484.119 Capsicum annuum HOM05D003294 ORTHO05D017749 5.7e-14 83.6 57 86.0
CAN.G484.120 Capsicum annuum HOM05D003294 ORTHO05D004060 5.7e-14 83.6 57 86.0
Solyc09g098510.3 Solanum lycopersicum HOM05D003294 ORTHO05D393108 7.5e-14 83.2 70 64.3
Sopen09g036430 Solanum pennellii HOM05D003294 ORTHO05D004060 4.8e-13 80.5 34 97.1
Sopen12g033500 Solanum pennellii HOM05D003294 ORTHO05D004060 4.8e-13 80.5 56 80.4
CAN.G484.124 Capsicum annuum HOM05D003294 ORTHO05D017749 1.1e-12 79.3 56 78.6
Peaxi162Scf00323g00521 Petunia axillaris HOM05D003294 ORTHO05D004060 1.1e-12 79.3 56 82.1
Peaxi162Scf00378g00826 Petunia axillaris HOM05D003294 ORTHO05D004060 1.1e-12 79.3 56 82.1
Peaxi162Scf00378g00828 Petunia axillaris HOM05D003294 ORTHO05D004060 1.1e-12 79.3 56 82.1
Peaxi162Scf39387g00001 Petunia axillaris HOM05D003294 ORTHO05D017749 1.1e-12 79.3 56 82.1
Sopen12g033540 Solanum pennellii HOM05D003294 ORTHO05D004060 1.4e-12 79.0 57 80.7
PGSC0003DMG400021603 Solanum tuberosum HOM05D003294 ORTHO05D004060 1.8e-12 78.6 34 94.1
Peaxi162Scf00323g00620 Petunia axillaris HOM05D003294 ORTHO05D004060 3.1e-12 77.8 57 75.4
Peaxi162Scf00378g00827 Petunia axillaris HOM05D003294 ORTHO05D004060 4.1e-12 77.4 72 56.9
CAN.G484.117 Capsicum annuum HOM05D003294 ORTHO05D004060 5.3e-12 77.0 57 80.7
Sopen12g033530 Solanum pennellii HOM05D003294 ORTHO05D004060 7.0e-12 76.6 57 78.9
Nitab4.5_0002252g0100 Nicotiana tabacum HOM05D003294 ORTHO05D017749 9.1e-12 76.3 56 76.8
Sopen12g033520 Solanum pennellii HOM05D003294 ORTHO05D004060 9.1e-12 76.3 57 77.2
MBI11_g02538_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 1.2e-11 75.9 33 93.9
Nn1g09740 Nelumbo nucifera HOM05D003294 ORTHO05D004060 1.2e-11 75.9 34 88.2
Nitab4.5_0000383g0230 Nicotiana tabacum HOM05D003294 ORTHO05D004060 1.6e-11 75.5 56 76.8
Nitab4.5_0000383g0350 Nicotiana tabacum HOM05D003294 ORTHO05D004060 1.6e-11 75.5 56 76.8
PGSC0003DMG400004675 Solanum tuberosum HOM05D003294 ORTHO05D004060 1.6e-11 75.5 56 76.8
VMungo1383G0624 Vigna mungo HOM05D003294 ORTHO05D004060 2.7e-11 74.7 48 68.8
CAN.G484.118 Capsicum annuum HOM05D003294 ORTHO05D004060 3.5e-11 74.3 56 76.8
Solyc12g098800.2 Solanum lycopersicum HOM05D003294 ORTHO05D017749 3.5e-11 74.3 47 76.6
CAN.G484.121 Capsicum annuum HOM05D003294 ORTHO05D004060 4.5e-11 73.9 47 74.5
Peaxi162Scf00323g00618 Petunia axillaris HOM05D003294 ORTHO05D004060 7.7e-11 73.2 56 73.2
Phvul.008G003200 Phaseolus vulgaris HOM05D003294 ORTHO05D004060 7.7e-11 73.2 39 74.4
Aqoxy2G04082 Aquilegia oxysepala HOM05D003294 ORTHO05D004060 1.0e-10 72.8 34 85.3
CAN.G484.123 Capsicum annuum HOM05D003294 ORTHO05D017749 1.0e-10 72.8 57 66.7
Sopen12g033510 Solanum pennellii HOM05D003294 ORTHO05D004060 1.0e-10 72.8 57 73.7
Solyc12g098780.2 Solanum lycopersicum HOM05D003294 ORTHO05D004060 1.3e-10 72.4 57 73.7
Potri.014G151101 Populus trichocarpa HOM05D003294 ORTHO05D004060 1.7e-10 72.0 45 66.7
Lj6C64T13 Lonicera japonica HOM05D003294 ORTHO05D004060 3.8e-10 70.9 34 82.4
arahy.Tifrunner.gnm1.ann1.F7AR35 Arachis hypogaea HOM05D003294 ORTHO05D004060 5.0e-10 70.5 49 63.3
arahy.Tifrunner.gnm1.ann1.U0YEJU Arachis hypogaea HOM05D003294 ORTHO05D004060 5.0e-10 70.5 49 63.3
Thecc.04G182000 Theobroma cacao HOM05D003294 ORTHO05D004060 5.0e-10 70.5 33 87.9
Duzib268G0989 Durio zibethinus HOM05D003294 ORTHO05D004060 6.5e-10 70.1 33 81.8
PGR142G3893 Punica granatum HOM05D003294 ORTHO05D004060 6.5e-10 70.1 33 81.8
Solyc12g150132.1 Solanum lycopersicum HOM05D003294 ORTHO05D004060 6.5e-10 70.1 34 79.4
Actinidia17219 Actinidia chinensis HOM05D003294 ORTHO05D004060 8.5e-10 69.7 37 81.1
Psat0s3952g0120 Pisum sativum HOM05D003294 ORTHO05D004060 8.5e-10 69.7 49 57.1
BolC3t15227H Brassica oleracea HOM05D003294 ORTHO05D004060 1.1e-09 69.3 35 82.9
CiPaw.01G105500 Carya illinoinensis HOM05D003294 ORTHO05D004060 1.1e-09 69.3 33 84.8
Psat6g050240 Pisum sativum HOM05D003294 ORTHO05D004060 1.1e-09 69.3 49 55.1
Sed0006652 Sechium edule HOM05D003294 ORTHO05D004060 1.1e-09 69.3 34 79.4
Actinidia35892 Actinidia chinensis HOM05D003294 ORTHO05D004060 1.5e-09 68.9 33 81.8
Cpa.g.sc164.2 Carica papaya HOM05D003294 ORTHO05D004060 1.5e-09 68.9 43 62.8
Psat0s3952g0080 Pisum sativum HOM05D003294 ORTHO05D004060 1.5e-09 68.9 33 81.8
PGSC0003DMG400004676 Solanum tuberosum HOM05D003294 ORTHO05D004060 1.9e-09 68.6 34 76.5
Aa31LG1G24960 Aethionema arabicum HOM05D003294 ORTHO05D004060 2.5e-09 68.2 34 79.4
Cfa015791 Carpinus fangiana HOM05D003294 ORTHO05D004060 2.5e-09 68.2 32 87.5
Migut.G00806 Erythranthe guttata HOM05D003294 ORTHO05D004060 2.5e-09 68.2 33 78.8
CSS0007766 Camellia sinensis var. sinensis HOM05D003294 ORTHO05D004060 3.2e-09 67.8 37 78.4
Gorai.006G227800 Gossypium raimondii HOM05D003294 ORTHO05D004060 3.2e-09 67.8 34 76.5
Psat0s2492g0040 Pisum sativum HOM05D003294 ORTHO05D004060 3.2e-09 67.8 33 81.8
TAR365G0590 Trochodendron aralioides HOM05D003294 ORTHO05D004060 3.2e-09 67.8 32 87.5
Dinv22670 Davidia involucrata HOM05D003294 ORTHO05D004060 4.2e-09 67.4 57 71.9
Gohir.A09G210500 Gossypium hirsutum HOM05D003294 ORTHO05D004060 4.2e-09 67.4 35 82.9
QL10p046489 Quercus lobata HOM05D003294 ORTHO05D004060 4.2e-09 67.4 33 81.8
Sabra14G0114500 Salix brachista HOM05D003294 ORTHO05D004060 4.2e-09 67.4 45 62.2
PGSC0003DMG400002364 Solanum tuberosum HOM05D003294 ORTHO05D004060 4.2e-09 67.4 57 61.4
Lj2g0025231 Lotus japonicus HOM05D003294 ORTHO05D004060 5.5e-09 67.0 39 69.2
Lj6g0023787 Lotus japonicus HOM05D003294 ORTHO05D004060 5.5e-09 67.0 33 81.8
Manes.11G114666 Manihot esculenta HOM05D003294 ORTHO05D004060 5.5e-09 67.0 32 81.2
Sabra14G0114900 Salix brachista HOM05D003294 ORTHO05D004060 5.5e-09 67.0 45 62.2
TPR.G36208 Trifolium pratense HOM05D003294 ORTHO05D004060 5.5e-09 67.0 49 55.1
TPR.G40851 Trifolium pratense HOM05D003294 ORTHO05D004060 5.5e-09 67.0 49 55.1
CsaV3_4G003720 Cucumis sativus L. HOM05D003294 ORTHO05D004060 7.2e-09 66.6 33 78.8
Lj2g0020269 Lotus japonicus HOM05D003294 ORTHO05D004060 7.2e-09 66.6 39 69.2
Peaxi162Scf00323g00064 Petunia axillaris HOM05D003294 ORTHO05D017749 7.2e-09 66.6 56 73.2
Sed0017100 Sechium edule HOM05D003294 ORTHO05D004060 7.2e-09 66.6 33 78.8
Solyc12g038860.1 Solanum lycopersicum HOM05D003294 ORTHO05D017749 7.2e-09 66.6 57 57.9
Cc03_g11110 Coffea canephora HOM05D003294 ORTHO05D004060 9.4e-09 66.2 30 86.7
MBI08_g05491_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 9.4e-09 66.2 33 75.8
Sabra14G0114800 Salix brachista HOM05D003294 ORTHO05D004060 9.4e-09 66.2 33 81.8
arahy.Tifrunner.gnm1.ann1.NU92WK Arachis hypogaea HOM05D003294 ORTHO05D004060 1.2e-08 65.9 33 78.8
arahy.Tifrunner.gnm1.ann1.XI0QBF Arachis hypogaea HOM05D003294 ORTHO05D004060 1.2e-08 65.9 33 78.8
Glyma.20G247850 Glycine max HOM05D003294 ORTHO05D004060 1.2e-08 65.9 33 78.8
Medtr1g116947 Medicago truncatula HOM05D003294 ORTHO05D004060 1.2e-08 65.9 33 78.8
BcaC01g05257 Brassica carinata HOM05D003294 ORTHO05D004060 1.6e-08 65.5 30 86.7
BcaC07g40319 Brassica carinata HOM05D003294 ORTHO05D004060 1.6e-08 65.5 30 86.7
A03p24060 Brassica napus HOM05D003294 ORTHO05D004060 1.6e-08 65.5 30 86.7
A04p32470 Brassica napus HOM05D003294 ORTHO05D004060 1.6e-08 65.5 30 86.7
A09p51590 Brassica napus HOM05D003294 ORTHO05D004060 1.6e-08 65.5 30 86.7
C03p28650 Brassica napus HOM05D003294 ORTHO05D004060 1.6e-08 65.5 30 86.7
C04p70160 Brassica napus HOM05D003294 ORTHO05D004060 1.6e-08 65.5 30 86.7
C08p34360 Brassica napus HOM05D003294 ORTHO05D004060 1.6e-08 65.5 30 86.7
BolC4t22061H Brassica oleracea HOM05D003294 ORTHO05D004060 1.6e-08 65.5 30 86.7
BolC4t28519H Brassica oleracea HOM05D003294 ORTHO05D004060 1.6e-08 65.5 30 86.7
BolC8t51035H Brassica oleracea HOM05D003294 ORTHO05D004060 1.6e-08 65.5 30 86.7
BraA09t40598Z Brassica rapa HOM05D003294 ORTHO05D004060 1.6e-08 65.5 30 86.7
DCAR_023908 Daucus carota HOM05D003294 ORTHO05D004060 1.6e-08 65.5 33 81.8
Duzib151G0954 Durio zibethinus HOM05D003294 ORTHO05D004060 1.6e-08 65.5 30 90.0
Nitab4.5_0020026g0010 Nicotiana tabacum HOM05D003294 ORTHO05D004060 1.6e-08 65.5 34 76.5
Oeu006702.1 Olea europaea HOM05D003294 ORTHO05D004060 1.6e-08 65.5 43 69.8
Potri.002G231250 Populus trichocarpa HOM05D003294 ORTHO05D004060 1.6e-08 65.5 32 81.2
Sp4g25280 Schrenkiella parvula HOM05D003294 ORTHO05D004060 1.6e-08 65.5 30 86.7
SpUn0921_0020 Schrenkiella parvula HOM05D003294 ORTHO05D004060 1.6e-08 65.5 30 86.7
SpUn1318_0010 Schrenkiella parvula HOM05D003294 ORTHO05D004060 1.6e-08 65.5 30 86.7
Medtr1g033080 Medicago truncatula HOM05D003294 ORTHO05D004060 2.1e-08 65.1 33 78.8
Medtr1g033130 Medicago truncatula HOM05D003294 ORTHO05D004060 2.1e-08 65.1 33 78.8
MBI08_g20550_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 2.7e-08 64.7 34 76.5
Nitab4.5_0000978g0120 Nicotiana tabacum HOM05D003294 ORTHO05D004060 2.7e-08 64.7 34 79.4
PSO017G7143 Papaver somniferum HOM05D003294 ORTHO05D004060 2.7e-08 64.7 33 75.8
MELO3C000009.2 Cucumis melo HOM05D000068 ORTHO05D000084 3.6e-08 64.3 33 75.8
Dinv44225 Davidia involucrata HOM05D003294 ORTHO05D004060 3.6e-08 64.3 30 86.7
FvH4_4g11660 Fragaria vesca HOM05D003294 ORTHO05D004060 3.6e-08 64.3 30 90.0
FAN07G0287 Fragaria x ananassa HOM05D003294 ORTHO05D004060 3.6e-08 64.3 30 90.0
FAN12G0818 Fragaria x ananassa HOM05D003294 ORTHO05D004060 3.6e-08 64.3 30 90.0
FAN12G1447 Fragaria x ananassa HOM05D003294 ORTHO05D004060 3.6e-08 64.3 30 90.0
FAN17G2242 Fragaria x ananassa HOM05D003294 ORTHO05D004060 3.6e-08 64.3 30 90.0
FAN22G1863 Fragaria x ananassa HOM05D003294 ORTHO05D004060 3.6e-08 64.3 30 90.0
VMungo0720G0780 Vigna mungo HOM05D003294 ORTHO05D004060 3.6e-08 64.3 33 75.8
CARHR138220 Cardamine hirsuta HOM05D003294 ORTHO05D004060 4.7e-08 63.9 30 83.3
Hund31331 Selenicereus undatus HOM05D003294 ORTHO05D004060 4.7e-08 63.9 34 79.4
Hund31332 Selenicereus undatus HOM05D003294 ORTHO05D004060 4.7e-08 63.9 34 79.4
ClCG07G016610 Citrullus lanatus HOM05D003294 ORTHO05D004060 6.1e-08 63.5 32 78.1
Lsat_1_v5_gn_2_50521 Lactuca sativa HOM05D003294 ORTHO05D004060 6.1e-08 63.5 35 80.0
Lsat_1_v5_gn_2_51341 Lactuca sativa HOM05D003294 ORTHO05D004060 6.1e-08 63.5 35 80.0
Lsat_1_v5_gn_2_51640 Lactuca sativa HOM05D003294 ORTHO05D004060 6.1e-08 63.5 35 80.0
Actinidia35893 Actinidia chinensis HOM05D003294 ORTHO05D004060 8.0e-08 63.2 30 83.3
Aa31LG10G13630 Aethionema arabicum HOM05D003294 ORTHO05D004060 8.0e-08 63.2 35 74.3
HanXRQChr14g0437091 Helianthus annuus HOM05D003294 ORTHO05D004060 8.0e-08 63.2 35 77.1
Lj5g0001019 Lotus japonicus HOM05D003294 ORTHO05D004060 8.0e-08 63.2 30 86.7
Phvul.007G002400 Phaseolus vulgaris HOM05D003294 ORTHO05D004060 8.0e-08 63.2 38 65.8
Sabra02G0176500 Salix brachista HOM05D003294 ORTHO05D004060 8.0e-08 63.2 30 83.3
MBI08_g05488_MAGBIO Magnolia biondii HOM05D003294 ORTHO05D004060 1.0e-07 62.8 35 74.3
PSO017G4822 Papaver somniferum HOM05D003294 ORTHO05D004060 1.0e-07 62.8 33 81.8
ECA238G3164 Erigeron canadensis HOM05D003294 ORTHO05D004060 1.4e-07 62.4 33 75.8
Gohir.D09G203900 Gossypium hirsutum HOM05D003294 ORTHO05D004060 1.4e-07 62.4 29 86.2
Carub.0555s0001 Capsella rubella HOM05D003294 ORTHO05D004060 1.8e-07 62.0 30 80.0
Lsat_1_v5_gn_2_51461 Lactuca sativa HOM05D003294 ORTHO05D004060 1.8e-07 62.0 35 77.1
THA.LOC104803514 Tarenaya hassleriana HOM05D003294 ORTHO05D004060 1.8e-07 62.0 44 59.1
vmacro00571 Vaccinium macrocarpon HOM05D003294 ORTHO05D004060 1.8e-07 62.0 33 72.7
Rhsim09G0035700 Rhododendron simsii HOM05D003294 ORTHO05D004060 2.3e-07 61.6 33 75.8
unitig_744.g24077 Utricularia gibba HOM05D003294 ORTHO05D004060 2.3e-07 61.6 40 60.0
MSTRG.24590 Avicennia marina HOM05D003294 ORTHO05D004060 3.0e-07 61.2 52 55.8
ATR0743G132 Amborella trichopoda HOM05D003294 ORTHO05D004060 4.0e-07 60.8 29 79.3
THA.LOC104802293 Tarenaya hassleriana HOM05D003294 ORTHO05D004060 5.2e-07 60.5 30 76.7
HanXRQChr03g0075661 Helianthus annuus HOM05D003294 ORTHO05D004060 6.8e-07 60.1 33 72.7
PSO675G6401 Papaver somniferum HOM05D003294 ORTHO05D004060 8.8e-07 59.7 32 81.2
Sopen12g018920 Solanum pennellii HOM05D003294 ORTHO05D004060 8.8e-07 59.7 57 54.4
Gorai.005G018000 Gossypium raimondii HOM05D003294 ORTHO05D004060 1.2e-06 59.3 43 60.5
TWI15G0198 Tripterygium wilfordii HOM05D003294 ORTHO05D004060 1.2e-06 59.3 28 82.1
unitig_578.g16248 Utricularia gibba HOM05D003294 ORTHO05D004060 1.2e-06 59.3 36 63.9
Lj6A66G18 Lonicera japonica HOM05D003294 ORTHO05D004060 2.6e-06 58.2 33 69.7
Lju521A1G13 Lonicera japonica HOM05D003294 ORTHO05D004060 2.6e-06 58.2 33 69.7
Lalb_Chr02g0144471 Lupinus albus HOM05D003294 ORTHO05D004060 2.6e-06 58.2 31 74.2
Gohir.A02G013500 Gossypium hirsutum HOM05D003294 ORTHO05D004060 9.8e-06 56.2 36 63.9
Gohir.D02G014550 Gossypium hirsutum HOM05D003294 ORTHO05D004060 9.8e-06 56.2 36 63.9
Nitab4.5_0011287g0010 Nicotiana tabacum HOM05D003294 ORTHO05D004060 9.8e-06 56.2 30 73.3


User provided reference genes

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