Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002904g0040 Nicotiana tabacum HOM05D005593 ORTHO05D006515 0.0e+00 1424.8 756 100.0
Nitab4.5_0009314g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 0.0e+00 1233.8 780 86.2
Peaxi162Scf01363g00023 Petunia axillaris HOM05D005593 ORTHO05D006515 7.0e-283 977.2 789 71.4
PGSC0003DMG400000308 Solanum tuberosum HOM05D005593 ORTHO05D006515 3.7e-260 901.7 765 67.3
Sopen12g003130 Solanum pennellii HOM05D005593 ORTHO05D006515 4.3e-248 861.7 765 65.2
Solyc12g007140.3 Solanum lycopersicum HOM05D005593 ORTHO05D006515 7.1e-227 791.2 706 64.4
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 6.6e-209 731.5 855 55.3
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 2.9e-188 662.9 917 47.4
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 1.7e-175 620.5 920 44.8
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 9.7e-168 594.7 847 47.2
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 2.3e-161 573.5 934 43.5
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 1.9e-131 474.2 884 40.3
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 3.3e-131 473.4 887 40.2
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 7.1e-110 402.5 883 36.7
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 7.3e-107 392.5 872 36.5
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 2.9e-103 380.6 875 36.5
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 2.4e-89 334.3 888 32.5
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 7.9e-85 319.3 863 32.8
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 1.5e-83 315.1 859 34.3
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 4.3e-83 313.5 855 32.9
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 5.6e-83 313.2 892 31.3
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 1.8e-81 308.1 854 31.4
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 6.5e-79 299.7 902 31.4
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 2.5e-78 297.7 860 32.0
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 1.6e-77 295.0 859 31.2
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 2.1e-77 294.7 769 32.5
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 2.1e-77 294.7 761 32.6
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 3.9e-76 290.4 964 30.4
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 3.9e-76 290.4 745 32.8
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 3.3e-75 287.3 908 30.7
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 4.3e-75 287.0 835 33.1
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 7.4e-75 286.2 897 28.5
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.4e-73 282.0 755 33.2
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.8e-73 281.6 772 33.8
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 1.5e-72 278.5 899 29.7
QL02p044157 Quercus lobata HOM05D005593 ORTHO05D006515 2.2e-71 274.6 835 30.3
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 3.8e-71 273.9 855 31.7
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 1.9e-70 271.6 936 29.2
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.8e-68 265.0 754 32.5
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 4.3e-67 260.4 886 28.9
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 4.3e-67 260.4 1014 28.0
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 2.2e-66 258.1 913 28.0
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 2.2e-66 258.1 812 31.9
GSVIVG01015371001 Vitis vinifera HOM05D005593 ORTHO05D006515 8.2e-66 256.1 700 31.3
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 1.4e-65 255.4 912 29.5
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.2e-64 252.3 921 27.7
SalBow6G5362 Salvia bowleyana HOM05D005593 ORTHO05D006515 5.9e-64 250.0 773 31.0
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 3.8e-63 247.3 955 28.9
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.2e-61 242.3 919 27.9
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 1.2e-61 242.3 915 28.6
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.6e-61 241.9 814 29.9
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 1.6e-61 241.9 814 29.6
Actinidia20382 Actinidia chinensis HOM05D005593 ORTHO05D006515 3.3e-59 234.2 782 29.3
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 9.1e-57 226.1 888 28.4
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 2.0e-56 224.9 850 27.4
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 5.9e-56 223.4 655 31.1
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 2.2e-55 221.5 866 27.5
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 2.9e-55 221.1 914 28.9
HanXRQChr12g0355541 Helianthus annuus HOM05D000246 ORTHO05D008363 3.8e-55 220.7 808 29.0
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 1.1e-54 219.2 785 31.0
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 9.4e-54 216.1 879 26.8
ECA234G4430 Erigeron canadensis HOM05D005593 ORTHO05D006515 1.6e-53 215.3 824 30.3
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 1.6e-53 215.3 894 27.6
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 2.1e-53 214.9 844 27.4
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 4.7e-53 213.8 864 27.9
DCAR_028703 Daucus carota HOM05D005593 ORTHO05D006515 3.9e-52 210.7 724 29.4
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 1.1e-51 209.1 861 26.8
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 2.2e-50 204.9 838 28.4
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 2.2e-50 204.9 625 31.0
AUR62010967 Chenopodium quinoa HOM05D005593 ORTHO05D006515 8.2e-50 203.0 874 27.0
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 5.3e-49 200.3 876 28.2
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 3.5e-48 197.6 596 29.0
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 5.9e-48 196.8 876 26.0
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 2.2e-47 194.9 871 26.1
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 6.5e-47 193.4 950 27.5
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 1.9e-46 191.8 816 28.6
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 1.9e-46 191.8 932 26.2
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 9.4e-46 189.5 876 27.7
PGR142G3553 Punica granatum HOM05D005593 ORTHO05D006515 1.2e-45 189.1 837 29.6
Ah.09g231030 Amaranthus hybridus HOM05D005593 ORTHO05D006515 2.1e-45 188.3 797 27.7
AUR62021477 Chenopodium quinoa HOM05D005593 ORTHO05D006515 2.1e-45 188.3 886 26.7
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 3.6e-45 187.6 330 42.1
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 8.0e-45 186.4 883 27.0
EL10Ac8g18455 Beta vulgaris HOM05D005593 ORTHO05D006515 4.0e-44 184.1 879 26.5
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 8.8e-44 183.0 873 27.4
Sc08g0007580 Simmondsia chinensis HOM05D005593 ORTHO05D006515 2.0e-43 181.8 838 27.8
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 5.9e-40 170.2 829 27.3
Rhsim01G0099800 Rhododendron simsii HOM05D005593 ORTHO05D006515 1.7e-39 168.7 416 34.9
Ah.14g082180 Amaranthus hybridus HOM05D005593 ORTHO05D006515 1.1e-38 166.0 868 25.9
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 2.7e-37 161.4 550 29.5
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 2.7e-37 161.4 909 25.6
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 1.3e-34 152.5 683 27.2
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 5.4e-33 147.1 859 26.2
Phvul.002G312500 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 2.9e-31 141.4 862 24.6
Glyma.05G230300 Glycine max HOM05D005593 ORTHO05D006515 5.5e-30 137.1 825 23.9
Glyma.08G037800 Glycine max HOM05D005593 ORTHO05D006515 9.5e-30 136.3 841 22.9
CsaV3_1G024390 Cucumis sativus L. HOM05D005593 ORTHO05D006515 3.6e-29 134.4 748 26.6
Peaxi162Scf00057g00131 Petunia axillaris HOM05D002076 ORTHO05D006515 1.0e-28 132.9 86 75.6
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 1.7e-26 125.6 833 23.9
VMungo0251G1265 Vigna mungo HOM05D005593 ORTHO05D006515 1.2e-24 119.4 843 22.8
Hund09124 Selenicereus undatus HOM05D005593 ORTHO05D006515 5.9e-24 117.1 910 24.3
THA.LOC104804597 Tarenaya hassleriana HOM05D005593 ORTHO05D006515 5.9e-24 117.1 828 24.9
ClCG11G002410 Citrullus lanatus HOM05D005593 ORTHO05D006515 1.7e-23 115.5 631 27.4
Sed0018005 Sechium edule HOM05D005593 ORTHO05D006515 4.4e-19 100.9 608 26.8
arahy.Tifrunner.gnm1.ann1.31F9U3 Arachis hypogaea HOM05D005593 ORTHO05D006515 1.7e-18 99.0 472 27.8
MELO3C004562.2 Cucumis melo HOM05D005593 ORTHO05D006515 2.2e-18 98.6 568 26.4
Eucgr.C01030 Eucalyptus grandis HOM05D005593 ORTHO05D006515 7.0e-17 93.6 156 37.8
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 9.2e-17 93.2 216 30.6
Rhsim01G0099500 Rhododendron simsii HOM05D005593 ORTHO05D006515 2.7e-16 91.7 515 24.3
CsaV3_2G002210 Cucumis sativus L. HOM05D005593 ORTHO05D006515 1.0e-15 89.7 602 25.9
BraA07t28551Z Brassica rapa HOM05D005593 ORTHO05D006515 1.1e-14 86.3 824 23.4
A07p07590 Brassica napus HOM05D005593 ORTHO05D006515 1.5e-14 85.9 824 23.4
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 9.5e-14 83.2 141 39.7
BcaB06g26676 Brassica carinata HOM05D005593 ORTHO05D006515 1.6e-13 82.4 827 22.5
HPP92_023948 Vanilla planifolia HOM05D005593 ORTHO05D006515 8.0e-13 80.1 740 23.2
CARHR100960 Cardamine hirsuta HOM05D005593 ORTHO05D006515 1.4e-12 79.3 828 23.1
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 5.2e-12 77.4 165 34.5
BolC7t41614H Brassica oleracea HOM05D005593 ORTHO05D006515 1.2e-11 76.3 284 29.2
AL3G40252 Arabidopsis lyrata HOM05D005593 ORTHO05D006515 2.0e-11 75.5 827 21.9
BolC7t41613H Brassica oleracea HOM05D005593 ORTHO05D006515 2.0e-11 75.5 830 24.0
BcaC06g35744 Brassica carinata HOM05D005593 ORTHO05D006515 7.5e-11 73.6 829 23.6
C07p11350 Brassica napus HOM05D005593 ORTHO05D006515 9.8e-11 73.2 829 23.6
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 1.3e-10 72.8 902 21.4
CSS0008305 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 1.7e-10 72.4 153 33.3
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 1.9e-09 68.9 214 32.7
Aa31sc586G30 Aethionema arabicum HOM05D005593 ORTHO05D006515 2.0e-08 65.5 564 24.1
HPP92_023915 Vanilla planifolia HOM05D005593 ORTHO05D006515 2.0e-08 65.5 364 25.8
Carub.0003s2504 Capsella rubella HOM05D005593 ORTHO05D006515 2.7e-08 65.1 816 22.3
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 2.7e-08 65.1 209 29.2
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 1.3e-07 62.8 215 31.6
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 2.3e-07 62.0 192 31.2
Sp3g22410 Schrenkiella parvula HOM05D005593 ORTHO05D006515 2.3e-07 62.0 819 22.2
AT3G24630 Arabidopsis thaliana HOM05D005593 ORTHO05D006515 3.0e-07 61.6 819 20.9
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 3.0e-07 61.6 246 28.5
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 8.6e-07 60.1 768 24.2
Lalb_Chr16g0388151 Lupinus albus HOM05D005593 ORTHO05D006515 8.6e-07 60.1 103 36.9
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 8.6e-07 60.1 213 30.5
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 1.1e-06 59.7 236 32.6
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 1.5e-06 59.3 771 20.4
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 2.5e-06 58.5 223 30.9
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 3.3e-06 58.2 191 27.7
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 4.3e-06 57.8 245 28.6
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 7.3e-06 57.0 208 28.4
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 9.5e-06 56.6 209 27.8


User provided reference genes

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