Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002901g0070 Nicotiana tabacum HOM05D001087 ORTHO05D005406 7.5e-77 290.4 144 100.0
Nitab4.5_0000519g0400 Nicotiana tabacum HOM05D001087 ORTHO05D005406 2.2e-52 209.1 139 80.6
CAN.G473.167 Capsicum annuum HOM05D001087 ORTHO05D005406 8.9e-46 187.2 99 96.0
Solyc02g094610.1 Solanum lycopersicum HOM05D001087 ORTHO05D005406 2.0e-45 186.0 98 96.9
Sopen02g039270 Solanum pennellii HOM05D001087 ORTHO05D005406 2.0e-45 186.0 98 96.9
CSS0025073 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D005406 7.8e-34 147.5 124 65.3
Duzib138G0185 Durio zibethinus HOM05D001087 ORTHO05D005406 7.8e-34 147.5 110 71.8
arahy.Tifrunner.gnm1.ann1.65DI7F Arachis hypogaea HOM05D001087 ORTHO05D005406 1.7e-33 146.4 106 70.8
Hund04150 Selenicereus undatus HOM05D001087 ORTHO05D005406 2.3e-33 146.0 104 72.1
GSVIVG01032937001 Vitis vinifera HOM05D001087 ORTHO05D005406 3.0e-33 145.6 98 74.5
Ah.02g128690 Amaranthus hybridus HOM05D001087 ORTHO05D005406 8.6e-33 144.1 99 73.7
FAN27G2264 Fragaria x ananassa HOM05D001087 ORTHO05D005406 4.3e-32 141.7 98 73.5
EL10Ac6g13922 Beta vulgaris HOM05D001087 ORTHO05D005406 5.6e-32 141.4 98 71.4
AUR62032520 Chenopodium quinoa HOM05D001087 ORTHO05D005406 5.6e-32 141.4 98 71.4
COL.COLO4_13413 Corchorus olitorius HOM05D001087 ORTHO05D005406 5.6e-32 141.4 107 71.0
MD09G1000300 Malus domestica HOM05D001087 ORTHO05D005406 5.6e-32 141.4 98 73.5
Gohir.D08G048400 Gossypium hirsutum HOM05D001087 ORTHO05D005406 9.5e-32 140.6 107 72.0
Gorai.004G047900 Gossypium raimondii HOM05D001087 ORTHO05D005406 9.5e-32 140.6 107 72.0
Nn4g22026 Nelumbo nucifera HOM05D001087 ORTHO05D005406 9.5e-32 140.6 95 78.9
Actinidia19533 Actinidia chinensis HOM05D001087 ORTHO05D005406 1.2e-31 140.2 98 71.4
AUR62017451 Chenopodium quinoa HOM05D001087 ORTHO05D005406 1.2e-31 140.2 98 70.4
Ciclev10014134m.g Citrus clementina HOM05D001087 ORTHO05D005406 1.2e-31 140.2 98 72.4
Gohir.A08G038200 Gossypium hirsutum HOM05D001087 ORTHO05D005406 1.2e-31 140.2 107 72.0
FvH4_6g54490 Fragaria vesca HOM05D001087 ORTHO05D005406 1.6e-31 139.8 98 72.4
FAN14G5433 Fragaria x ananassa HOM05D001087 ORTHO05D005406 1.6e-31 139.8 98 72.4
Rhsim08G0036900 Rhododendron simsii HOM05D001087 ORTHO05D005406 1.6e-31 139.8 95 73.7
DCAR_000957 Daucus carota HOM05D001087 ORTHO05D005406 2.1e-31 139.4 98 70.4
Oeu062515.1 Olea europaea HOM05D001087 ORTHO05D005406 2.8e-31 139.0 98 71.4
Prupe.3G316100 Prunus persica HOM05D001087 ORTHO05D005406 2.8e-31 139.0 98 71.4
QL02p063912 Quercus lobata HOM05D001087 ORTHO05D005406 2.8e-31 139.0 99 73.7
RcHm_v2.0_Chr2g0176781 Rosa chinensis HOM05D001087 ORTHO05D005406 2.8e-31 139.0 98 71.4
Thecc.04G053100 Theobroma cacao HOM05D001087 ORTHO05D005406 2.8e-31 139.0 107 69.2
CiPaw.03G079200 Carya illinoinensis HOM05D001087 ORTHO05D005406 3.6e-31 138.7 98 73.5
Ca_08243_v3 Cicer arietinum L. HOM05D001087 ORTHO05D005406 6.2e-31 137.9 98 71.4
Lsat_1_v5_gn_3_103380 Lactuca sativa HOM05D001087 ORTHO05D005406 6.2e-31 137.9 98 75.5
PGR042G1457 Punica granatum HOM05D001087 ORTHO05D005406 6.2e-31 137.9 95 74.7
TPR.G31052 Trifolium pratense HOM05D001087 ORTHO05D005406 6.2e-31 137.9 98 70.4
CANSAT64G1951 Cannabis sativa HOM05D001087 ORTHO05D005406 8.1e-31 137.5 98 71.4
VMungo1383G1594 Vigna mungo HOM05D001087 ORTHO05D005406 8.1e-31 137.5 104 68.3
MBI07_g11062_MAGBIO Magnolia biondii HOM05D001087 ORTHO05D005406 1.1e-30 137.1 113 66.4
Atru.chr6.2747 Acer truncatum HOM05D001087 ORTHO05D005406 1.4e-30 136.7 98 72.4
arahy.Tifrunner.gnm1.ann1.C4QHPC Arachis hypogaea HOM05D001087 ORTHO05D005406 1.8e-30 136.3 110 65.5
Medtr7g084880 Medicago truncatula HOM05D001087 ORTHO05D005406 1.8e-30 136.3 98 69.4
PSO017G2606 Papaver somniferum HOM05D001087 ORTHO05D005406 1.8e-30 136.3 117 66.7
SEGI_07298 Sequoiadendron giganteum HOM05D001087 ORTHO05D005406 1.8e-30 136.3 99 70.7
Phvul.001G097600 Phaseolus vulgaris HOM05D001087 ORTHO05D005406 2.4e-30 136.0 98 70.4
Psat0s4626g0080 Pisum sativum HOM05D001087 ORTHO05D005406 2.4e-30 136.0 98 69.4
PSO478G2418 Papaver somniferum HOM05D001087 ORTHO05D005406 3.1e-30 135.6 124 62.9
TAR629G2385 Trochodendron aralioides HOM05D001087 ORTHO05D005406 4.0e-30 135.2 95 73.7
SalBow4G1044 Salvia bowleyana HOM05D001087 ORTHO05D005406 5.2e-30 134.8 98 70.4
TWI32G0903 Tripterygium wilfordii HOM05D001087 ORTHO05D005406 2.0e-29 132.9 98 69.4
HPP92_021688 Vanilla planifolia HOM05D001087 ORTHO05D005406 2.6e-29 132.5 104 64.4
HPP92_021715 Vanilla planifolia HOM05D001087 ORTHO05D005406 3.4e-29 132.1 104 63.5
ClCG05G012380 Citrullus lanatus HOM05D001087 ORTHO05D005406 4.4e-29 131.7 95 71.6
MELO3C014745.2 Cucumis melo HOM05D001087 ORTHO05D005406 4.4e-29 131.7 95 71.6
HanXRQChr17g0550851 Helianthus annuus HOM05D001087 ORTHO05D005406 4.4e-29 131.7 95 72.6
ATR0582G201 Amborella trichopoda HOM05D001087 ORTHO05D005406 5.8e-29 131.3 95 71.6
Cc07_g01490 Coffea canephora HOM05D001087 ORTHO05D005406 5.8e-29 131.3 98 64.3
Manes.04G095500 Manihot esculenta HOM05D001087 ORTHO05D005406 5.8e-29 131.3 95 71.6
Lalb_Chr14g0364241 Lupinus albus HOM05D001087 ORTHO05D005406 1.3e-28 130.2 110 64.5
Glyma.16G044400 Glycine max HOM05D001087 ORTHO05D005406 2.2e-28 129.4 98 66.3
THA.LOC104805290 Tarenaya hassleriana HOM05D001087 ORTHO05D005406 2.2e-28 129.4 98 68.4
CsaV3_3G020140 Cucumis sativus L. HOM05D001087 ORTHO05D005406 2.9e-28 129.0 95 69.5
BraA09t41703Z Brassica rapa HOM05D001087 ORTHO05D005406 3.8e-28 128.6 103 68.0
Migut.F00007 Erythranthe guttata HOM05D001087 ORTHO05D005406 4.9e-28 128.3 98 65.3
Eucgr.H05015 Eucalyptus grandis HOM05D001087 ORTHO05D005406 6.4e-28 127.9 98 68.4
Glyma.19G107500 Glycine max HOM05D001087 ORTHO05D005406 6.4e-28 127.9 98 65.3
Potri.014G141100 Populus trichocarpa HOM05D001087 ORTHO05D005406 6.4e-28 127.9 95 70.5
Aqoxy3G01996 Aquilegia oxysepala HOM05D001087 ORTHO05D005406 1.1e-27 127.1 95 71.6
Sc16g0004210 Simmondsia chinensis HOM05D001087 ORTHO05D005406 1.1e-27 127.1 98 67.3
MSTRG.3036 Avicennia marina HOM05D001087 ORTHO05D005406 3.2e-27 125.6 140 54.3
ECA246G3450 Erigeron canadensis HOM05D001087 ORTHO05D005406 4.1e-27 125.2 120 60.0
Lj1g0002000 Lotus japonicus HOM05D001087 ORTHO05D005406 4.1e-27 125.2 110 60.0
Sed0004915 Sechium edule HOM05D001087 ORTHO05D005406 1.6e-26 123.2 95 68.4
A09p63520 Brassica napus HOM05D001087 ORTHO05D005406 3.5e-26 122.1 95 69.5
AL1G24570 Arabidopsis lyrata HOM05D001087 ORTHO05D005406 7.8e-26 120.9 95 68.4
AT1G12930 Arabidopsis thaliana HOM05D001087 ORTHO05D005406 7.8e-26 120.9 95 68.4
Aa31LG1G1850 Aethionema arabicum HOM05D001087 ORTHO05D005406 1.0e-25 120.6 95 67.4
Carub.0001s1270 Capsella rubella HOM05D001087 ORTHO05D005406 1.0e-25 120.6 95 67.4
CARHR013280 Cardamine hirsuta HOM05D001087 ORTHO05D005406 1.0e-25 120.6 95 67.4
Thhalv10006676m.g Eutrema salsugineum HOM05D001087 ORTHO05D005406 1.3e-25 120.2 95 67.4
Cpa.g.sc70.26 Carica papaya HOM05D001087 ORTHO05D005406 2.3e-25 119.4 116 56.9
Sp1g11500 Schrenkiella parvula HOM05D001087 ORTHO05D005406 3.9e-25 118.6 95 67.4
BcaB08g34240 Brassica carinata HOM05D001087 ORTHO05D005406 5.1e-25 118.2 95 67.4
C08p47020 Brassica napus HOM05D001087 ORTHO05D005406 5.1e-25 118.2 95 67.4
BolC8t52241H Brassica oleracea HOM05D001087 ORTHO05D005406 5.1e-25 118.2 95 67.4
CDE05G0125 Ceratophyllum demersum HOM05D001087 ORTHO05D005406 6.6e-25 117.9 95 64.2
Mapoly0055s0098 Marchantia polymorpha HOM05D001087 ORTHO05D005406 1.5e-24 116.7 96 59.4
Zm00001eb197740 Zea mays HOM05D001087 ORTHO05D005406 1.5e-24 116.7 104 54.8
Pp3c10_7760 Physcomitrium patens HOM05D001087 ORTHO05D005406 6.2e-23 111.3 96 60.4
Pp3c14_8290 Physcomitrium patens HOM05D001087 ORTHO05D005406 1.5e-21 106.7 96 57.3
Pp3c14_8293 Physcomitrium patens HOM05D001087 ORTHO05D005406 1.5e-21 106.7 96 57.3
A06p08730 Brassica napus HOM05D001087 ORTHO05D005406 1.7e-20 103.2 91 62.6
SGA_v2.0_scaffold44G16961 Striga asiatica HOM05D001087 ORTHO05D005406 2.4e-19 99.4 147 41.5
Lj7A620G41 Lonicera japonica HOM05D001087 ORTHO05D005406 6.0e-18 94.7 64 73.4
SMO353G0092 Selaginella moellendorffii HOM05D001087 ORTHO05D005406 1.7e-17 93.2 95 46.3
CBR_g30317 Chara braunii HOM05D001087 ORTHO05D005406 2.5e-16 89.4 101 46.5
BolC5t29778H Brassica oleracea HOM05D001087 ORTHO05D005406 3.3e-16 89.0 95 57.9
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 4.3e-16 88.6 84 52.4
QL02p063896 Quercus lobata HOM05D001087 ORTHO05D005406 5.6e-16 88.2 86 57.0
C05p10320 Brassica napus HOM05D001087 ORTHO05D005406 3.1e-14 82.4 95 54.7
Sabra14G0106400 Salix brachista HOM05D001087 ORTHO05D005406 1.3e-12 77.0 62 64.5
SalBow6G3864 Salvia bowleyana HOM05D001087 ORTHO05D004028 1.9e-11 73.2 62 59.7
Peaxi162Scf00420g00945 Petunia axillaris HOM05D001087 ORTHO05D005406 3.5e-10 68.9 35 97.1
Haze_14336 Corylus avellana HOM05D001087 ORTHO05D005406 2.5e-08 62.8 98 44.9
FAN04G2467 Fragaria x ananassa HOM05D001087 ORTHO05D005406 2.1e-07 59.7 35 82.9
Lj7A620G42 Lonicera japonica HOM05D001087 ORTHO05D005406 2.1e-07 59.7 35 82.9
Dinv00562 Davidia involucrata HOM05D001087 ORTHO05D005406 2.8e-07 59.3 35 85.7


User provided reference genes

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