Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002901g0060 Nicotiana tabacum HOM05D001087 ORTHO05D005406 0.0e+00 1180.6 609 100.0
Sopen02g039270 Solanum pennellii HOM05D001087 ORTHO05D005406 1.7e-271 939.1 553 88.2
CAN.G473.166 Capsicum annuum HOM05D001087 ORTHO05D005406 9.4e-230 800.4 458 90.2
CSS0025073 Camellia sinensis var. sinensis HOM05D001087 ORTHO05D005406 2.4e-209 732.6 554 68.6
Actinidia19533 Actinidia chinensis HOM05D001087 ORTHO05D005406 1.7e-199 699.9 573 63.7
CiPaw.03G079200 Carya illinoinensis HOM05D001087 ORTHO05D005406 2.5e-198 696.0 559 66.0
QL02p063912 Quercus lobata HOM05D001087 ORTHO05D005406 1.2e-197 693.7 556 64.9
COL.COLO4_13413 Corchorus olitorius HOM05D001087 ORTHO05D005406 2.8e-197 692.6 559 63.5
GSVIVG01032937001 Vitis vinifera HOM05D001087 ORTHO05D005406 3.6e-197 692.2 554 66.6
RcHm_v2.0_Chr2g0176781 Rosa chinensis HOM05D001087 ORTHO05D005406 2.9e-194 682.6 559 64.4
TAR629G2385 Trochodendron aralioides HOM05D001087 ORTHO05D005406 7.0e-193 677.9 560 63.9
PSO017G2606 Papaver somniferum HOM05D001087 ORTHO05D005406 9.2e-193 677.6 559 63.5
PSO478G2418 Papaver somniferum HOM05D001087 ORTHO05D005406 9.2e-193 677.6 559 63.5
FvH4_6g54490 Fragaria vesca HOM05D001087 ORTHO05D005406 4.6e-192 675.2 559 63.9
MD09G1000300 Malus domestica HOM05D001087 ORTHO05D005406 5.9e-192 674.9 559 63.5
Cc07_g01490 Coffea canephora HOM05D001087 ORTHO05D005406 8.6e-191 671.0 556 62.6
Ciclev10014134m.g Citrus clementina HOM05D001087 ORTHO05D005406 1.5e-190 670.2 559 63.9
Atru.chr6.2747 Acer truncatum HOM05D001087 ORTHO05D005406 1.9e-190 669.8 559 63.0
Solyc02g094610.1 Solanum lycopersicum HOM05D001087 ORTHO05D005406 3.6e-189 665.6 404 85.9
Manes.04G095500 Manihot esculenta HOM05D001087 ORTHO05D005406 6.2e-189 664.8 559 62.3
Thecc.04G053100 Theobroma cacao HOM05D001087 ORTHO05D005406 3.1e-188 662.5 559 61.7
Nn4g22026 Nelumbo nucifera HOM05D001087 ORTHO05D005406 6.8e-188 661.4 554 62.8
Gohir.A08G038200 Gossypium hirsutum HOM05D001087 ORTHO05D005406 4.4e-187 658.7 559 61.2
Gohir.D08G048400 Gossypium hirsutum HOM05D001087 ORTHO05D005406 1.3e-186 657.1 559 60.8
Oeu062515.1 Olea europaea HOM05D001087 ORTHO05D005406 1.3e-186 657.1 559 61.9
Gorai.004G047900 Gossypium raimondii HOM05D001087 ORTHO05D005406 8.3e-186 654.4 559 60.8
CANSAT64G1951 Cannabis sativa HOM05D001087 ORTHO05D005406 9.2e-185 651.0 561 59.9
TWI32G0903 Tripterygium wilfordii HOM05D001087 ORTHO05D005406 1.2e-184 650.6 559 61.5
Potri.014G141100 Populus trichocarpa HOM05D001087 ORTHO05D005406 4.6e-184 648.7 559 61.5
Glyma.16G044400 Glycine max HOM05D001087 ORTHO05D005406 3.9e-183 645.6 559 60.5
Lj1g0002000 Lotus japonicus HOM05D001087 ORTHO05D005406 3.9e-183 645.6 552 60.7
TPR.G31052 Trifolium pratense HOM05D001087 ORTHO05D005406 5.0e-183 645.2 601 57.9
CsaV3_3G020140 Cucumis sativus L. HOM05D001087 ORTHO05D005406 1.1e-182 644.0 559 60.8
MBI07_g11062_MAGBIO Magnolia biondii HOM05D001087 ORTHO05D005406 1.9e-182 643.3 554 60.5
VMungo1383G1594 Vigna mungo HOM05D001087 ORTHO05D005406 1.9e-182 643.3 559 60.6
Sed0004915 Sechium edule HOM05D001087 ORTHO05D005406 9.5e-182 641.0 571 60.1
Glyma.19G107500 Glycine max HOM05D001087 ORTHO05D005406 2.1e-181 639.8 553 60.4
arahy.Tifrunner.gnm1.ann1.C4QHPC Arachis hypogaea HOM05D001087 ORTHO05D005406 1.4e-180 637.1 552 60.9
MELO3C014745.2 Cucumis melo HOM05D001087 ORTHO05D005406 3.1e-180 636.0 559 60.5
Phvul.001G097600 Phaseolus vulgaris HOM05D001087 ORTHO05D005406 3.1e-180 636.0 559 59.9
AUR62017451 Chenopodium quinoa HOM05D001087 ORTHO05D005406 4.0e-180 635.6 522 62.6
Aqoxy3G01996 Aquilegia oxysepala HOM05D001087 ORTHO05D005406 1.5e-179 633.6 559 59.6
Ca_08243_v3 Cicer arietinum L. HOM05D001087 ORTHO05D005406 3.4e-179 632.5 552 60.3
arahy.Tifrunner.gnm1.ann1.65DI7F Arachis hypogaea HOM05D001087 ORTHO05D005406 9.8e-179 630.9 601 56.7
Lsat_1_v5_gn_3_103380 Lactuca sativa HOM05D001087 ORTHO05D005406 8.3e-178 627.9 554 58.3
Prupe.3G316100 Prunus persica HOM05D001087 ORTHO05D005406 1.9e-177 626.7 511 64.0
Lalb_Chr14g0364241 Lupinus albus HOM05D001087 ORTHO05D005406 6.0e-176 621.7 552 60.3
HanXRQChr17g0550851 Helianthus annuus HOM05D001087 ORTHO05D005406 7.8e-176 621.3 554 58.7
ECA246G3450 Erigeron canadensis HOM05D001087 ORTHO05D005406 2.3e-175 619.8 553 57.7
Cpa.g.sc70.28 Carica papaya HOM05D001087 ORTHO05D005406 1.1e-169 600.9 560 58.0
Migut.F00007 Erythranthe guttata HOM05D001087 ORTHO05D005406 1.4e-169 600.5 561 56.1
ATR0582G201 Amborella trichopoda HOM05D001087 ORTHO05D005406 1.9e-169 600.1 582 56.0
ClCG05G012390 Citrullus lanatus HOM05D001087 ORTHO05D005406 4.1e-169 599.0 555 58.4
vmacro22106 Vaccinium macrocarpon HOM05D001087 ORTHO05D005406 1.6e-168 597.0 669 52.0
THA.LOC104805290 Tarenaya hassleriana HOM05D001087 ORTHO05D005406 2.3e-167 593.2 574 55.1
Rhsim08G0036900 Rhododendron simsii HOM05D001087 ORTHO05D005406 3.6e-165 585.9 563 56.8
Eucgr.G01904 Eucalyptus grandis HOM05D001087 ORTHO05D005406 8.1e-165 584.7 569 55.9
PGR042G1457 Punica granatum HOM05D001087 ORTHO05D005406 8.9e-164 581.3 559 56.7
AT1G12930 Arabidopsis thaliana HOM05D001087 ORTHO05D005406 1.5e-163 580.5 555 55.1
Medtr7g084880 Medicago truncatula HOM05D001087 ORTHO05D005406 5.8e-163 578.6 552 57.2
Carub.0001s1270 Capsella rubella HOM05D001087 ORTHO05D005406 9.9e-163 577.8 576 54.0
AL1G24570 Arabidopsis lyrata HOM05D001087 ORTHO05D005406 2.2e-162 576.6 577 53.6
Thhalv10006676m.g Eutrema salsugineum HOM05D001087 ORTHO05D005406 2.9e-162 576.2 576 53.8
Hund04150 Selenicereus undatus HOM05D001087 ORTHO05D005406 3.8e-162 575.9 504 59.3
MSTRG.3036 Avicennia marina HOM05D001087 ORTHO05D005406 4.9e-162 575.5 559 55.3
Sp1g11500 Schrenkiella parvula HOM05D001087 ORTHO05D005406 1.2e-160 570.9 575 53.4
BraA09t41703Z Brassica rapa HOM05D001087 ORTHO05D005406 7.8e-160 568.2 589 52.1
SGA_v2.0_scaffold44G16961 Striga asiatica HOM05D001087 ORTHO05D005406 1.3e-159 567.4 581 53.9
A09p63520 Brassica napus HOM05D001087 ORTHO05D005406 1.7e-159 567.0 589 52.0
C08p47020 Brassica napus HOM05D001087 ORTHO05D005406 5.1e-159 565.5 586 52.4
BcaB08g34240 Brassica carinata HOM05D001087 ORTHO05D005406 1.5e-158 563.9 566 53.5
AUR62032520 Chenopodium quinoa HOM05D001087 ORTHO05D005406 3.1e-156 556.2 522 57.1
Aa31LG1G1850 Aethionema arabicum HOM05D001087 ORTHO05D005406 5.3e-156 555.4 574 52.3
HPP92_021688 Vanilla planifolia HOM05D001087 ORTHO05D005406 1.2e-155 554.3 554 53.8
SalBow4G1044 Salvia bowleyana HOM05D001087 ORTHO05D005406 1.5e-155 553.9 610 49.2
Duzib138G0185 Durio zibethinus HOM05D001087 ORTHO05D005406 4.5e-155 552.4 562 54.4
BolC8t52241H Brassica oleracea HOM05D001087 ORTHO05D005406 7.6e-155 551.6 558 52.9
CDE05G0125 Ceratophyllum demersum HOM05D001087 ORTHO05D005406 9.3e-153 544.7 536 51.9
Zm00001eb197740 Zea mays HOM05D001087 ORTHO05D005406 9.3e-153 544.7 554 53.8
Ah.02g128690 Amaranthus hybridus HOM05D001087 ORTHO05D005406 1.2e-152 544.3 557 54.4
EL10Ac6g13922 Beta vulgaris HOM05D001087 ORTHO05D005406 4.0e-148 529.3 586 52.2
Sabra14G0106400 Salix brachista HOM05D001087 ORTHO05D005406 1.1e-134 484.6 602 48.8
BcaC05g25140 Brassica carinata HOM05D001087 ORTHO05D005406 8.2e-133 478.4 576 48.3
Sc16g0004210 Simmondsia chinensis HOM05D001087 ORTHO05D005406 8.5e-130 468.4 403 60.3
Peaxi162Scf00420g00935 Petunia axillaris HOM05D001087 ORTHO05D005406 3.8e-122 443.0 251 89.6
Mapoly0055s0098 Marchantia polymorpha HOM05D001087 ORTHO05D005406 3.4e-115 419.9 561 42.2
Lj7A620G39 Lonicera japonica HOM05D001087 ORTHO05D005406 5.9e-115 419.1 367 62.1
A06p08730 Brassica napus HOM05D001087 ORTHO05D005406 1.7e-109 401.0 525 46.5
Pp3c10_7760 Physcomitrium patens HOM05D001087 ORTHO05D005406 1.3e-106 391.3 563 40.5
Psat0s4626g0040 Pisum sativum HOM05D001087 ORTHO05D005406 1.2e-104 384.8 318 64.5
Pp3c14_8290 Physcomitrium patens HOM05D001087 ORTHO05D005406 1.8e-103 380.9 555 39.6
Pp3c14_8293 Physcomitrium patens HOM05D001087 ORTHO05D005406 1.8e-103 380.9 555 39.6
FAN27G2264 Fragaria x ananassa HOM05D001087 ORTHO05D005406 9.7e-102 375.2 444 49.1
HPP92_021716 Vanilla planifolia HOM05D001087 ORTHO05D005406 9.1e-100 368.6 444 46.2
C05p10320 Brassica napus HOM05D001087 ORTHO05D005406 1.6e-99 367.9 574 41.5
FAN05G2313 Fragaria x ananassa HOM05D001087 ORTHO05D005406 1.7e-98 364.4 444 48.0
FAN14G5757 Fragaria x ananassa HOM05D001087 ORTHO05D005406 1.1e-97 361.7 364 56.0
Nitab4.5_0000519g0380 Nicotiana tabacum HOM05D001087 ORTHO05D005406 3.4e-94 350.1 215 84.2
Peaxi162Scf00420g00943 Petunia axillaris HOM05D001087 ORTHO05D005406 1.5e-89 334.7 187 92.5
HPP92_021631 Vanilla planifolia HOM05D001087 ORTHO05D005406 6.8e-87 325.9 360 48.6
Haze_14337 Corylus avellana HOM05D001087 ORTHO05D005406 1.3e-85 321.6 262 65.6
Haze_14336 Corylus avellana HOM05D001087 ORTHO05D005406 1.6e-83 314.7 275 60.7
DCAR_000957 Daucus carota HOM05D001087 ORTHO05D005406 7.3e-81 305.8 312 51.3
SMO353G0092 Selaginella moellendorffii HOM05D001087 ORTHO05D005406 5.2e-71 273.1 470 36.0
Solyc02g094600.2 Solanum lycopersicum HOM05D001087 ORTHO05D005406 1.5e-70 271.6 152 91.4
Nitab4.5_0005199g0050 Nicotiana tabacum HOM05D001087 ORTHO05D005406 1.6e-67 261.5 347 47.8
Thhalv10017610m.g Eutrema salsugineum HOM05D001087 ORTHO05D005406 3.4e-62 243.8 343 42.0
SEGI_07003 Sequoiadendron giganteum HOM05D001087 ORTHO05D005406 5.6e-57 226.5 287 42.5
DCAR_000958 Daucus carota HOM05D001087 ORTHO05D005406 2.1e-56 224.6 176 65.3
CBR_g30317 Chara braunii HOM05D001087 ORTHO05D005406 2.9e-53 214.2 546 28.0
Nitab4.5_0000136g0080 Nicotiana tabacum HOM05D001087 ORTHO05D005406 4.1e-52 210.3 324 44.4
Psat0s4626g0080 Pisum sativum HOM05D001087 ORTHO05D005406 1.7e-45 188.3 178 56.7
BcaC05g25411 Brassica carinata HOM05D001087 ORTHO05D005406 2.4e-44 184.5 273 39.9
Nitab4.5_0000519g0370 Nicotiana tabacum HOM05D001087 ORTHO05D005406 3.2e-44 184.1 148 71.6
BolC5t29778H Brassica oleracea HOM05D001087 ORTHO05D005406 5.4e-44 183.3 213 46.5
HPP92_021630 Vanilla planifolia HOM05D001087 ORTHO05D005406 1.9e-36 158.3 115 66.1
Glyma.04G126700 Glycine max HOM05D001087 ORTHO05D005406 3.5e-35 154.1 165 50.3
RcHm_v2.0_Chr7g0218031 Rosa chinensis HOM05D001087 ORTHO05D005406 2.1e-32 144.8 134 59.7
Glyma.09G128151 Glycine max HOM05D001087 ORTHO05D005406 6.4e-29 133.3 146 49.3
Lj7C620T11 Lonicera japonica HOM05D001087 ORTHO05D005406 5.5e-28 130.2 90 72.2
RcHm_v2.0_Chr1g0366171 Rosa chinensis HOM05D001087 ORTHO05D017953 1.2e-22 112.5 134 45.5
SEGI_28776 Sequoiadendron giganteum HOM05D001087 ORTHO05D005406 2.0e-22 111.7 89 59.6
Psat0s3545g0040 Pisum sativum HOM05D001087 ORTHO05D005406 1.5e-17 95.5 78 61.5
Lsat_1_v5_gn_5_71520 Lactuca sativa HOM05D000842 ORTHO05D000650 6.3e-16 90.1 95 51.6
HanXRQChr13g0414341 Helianthus annuus HOM05D001087 ORTHO05D005406 1.0e-13 82.8 67 62.7
RcHm_v2.0_Chr4g0437621 Rosa chinensis HOM05D001801 ORTHO05D001739 3.4e-06 57.8 103 43.7


User provided reference genes

Program Settings