Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 5.4e-170 600.9 299 100.0
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 2.5e-143 512.3 298 84.9
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 8.3e-139 497.3 297 83.2
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 9.2e-138 493.8 297 83.2
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 1.5e-127 459.9 275 84.7
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 1.8e-101 373.2 298 65.1
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 4.5e-100 368.6 310 62.6
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 4.9e-99 365.2 302 61.9
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 3.2e-98 362.5 283 65.4
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 1.3e-96 357.1 301 63.1
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 6.7e-96 354.8 302 62.3
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 8.7e-96 354.4 295 63.1
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 3.3e-95 352.4 298 60.4
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 5.7e-95 351.7 298 60.4
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 7.4e-95 351.3 286 63.3
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 9.7e-95 350.9 286 61.5
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 9.7e-95 350.9 290 63.1
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 2.2e-94 349.7 294 62.9
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 4.8e-94 348.6 305 62.3
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 6.3e-94 348.2 288 63.2
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 1.8e-93 346.7 301 60.5
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 2.4e-93 346.3 297 58.6
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 3.1e-93 345.9 302 58.9
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 6.9e-93 344.7 192 92.7
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 1.5e-92 343.6 298 61.4
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 2.6e-92 342.8 286 61.2
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 4.5e-92 342.0 312 60.9
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 1.3e-91 340.5 281 63.3
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 1.7e-91 340.1 300 61.0
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 2.2e-91 339.7 286 60.5
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 3.8e-91 339.0 297 58.2
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 1.9e-90 336.7 297 60.3
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 4.2e-90 335.5 290 58.6
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 5.5e-90 335.1 294 60.9
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 9.4e-90 334.3 290 59.3
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 1.2e-89 334.0 286 60.8
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 2.1e-89 333.2 313 60.7
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 3.6e-89 332.4 290 58.3
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 6.1e-89 331.6 300 58.3
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 7.9e-89 331.3 293 59.0
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 7.9e-89 331.3 306 56.5
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 1.0e-88 330.9 290 59.0
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 3.0e-88 329.3 282 61.0
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 5.1e-88 328.6 289 59.2
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 5.1e-88 328.6 291 57.7
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 1.1e-87 327.4 286 61.5
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 1.1e-87 327.4 287 59.6
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 5.7e-87 325.1 278 60.8
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 5.7e-87 325.1 278 60.8
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 5.7e-87 325.1 290 57.6
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 1.7e-86 323.6 281 58.7
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 1.7e-86 323.6 299 56.2
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 2.8e-86 322.8 298 56.4
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 8.2e-86 321.2 308 57.1
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 5.3e-85 318.5 274 61.7
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 2.6e-84 316.2 291 58.4
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 4.5e-84 315.5 283 59.7
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 5.9e-84 315.1 292 55.1
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 1.1e-82 310.8 281 59.1
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 3.2e-82 309.3 292 55.1
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 4.7e-81 305.4 286 54.5
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 1.0e-80 304.3 292 55.1
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 1.4e-80 303.9 265 60.8
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 1.8e-80 303.5 281 55.5
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 1.8e-80 303.5 275 57.5
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 3.0e-80 302.8 293 55.3
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 3.0e-80 302.8 276 58.3
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 6.7e-80 301.6 291 54.3
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 1.5e-79 300.4 296 53.4
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 1.5e-79 300.4 290 54.8
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 2.0e-79 300.1 276 58.7
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 3.3e-79 299.3 296 53.4
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 5.7e-79 298.5 295 53.6
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 9.7e-79 297.7 301 52.8
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 9.7e-79 297.7 299 53.2
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 2.2e-78 296.6 279 55.6
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 8.2e-78 294.7 296 53.0
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 8.2e-78 294.7 292 55.1
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 2.9e-75 286.2 220 64.1
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 2.9e-75 286.2 281 55.5
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 1.1e-74 284.3 300 53.3
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 2.5e-74 283.1 286 54.2
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 2.5e-74 283.1 296 54.1
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 1.4e-72 277.3 292 53.8
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 1.8e-72 276.9 296 51.7
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 3.8e-67 259.2 288 50.7
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 2.5e-66 256.5 345 44.1
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 1.2e-63 247.7 298 48.0
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 2.0e-63 246.9 245 53.9
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 1.3e-62 244.2 174 70.7
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 8.2e-62 241.5 300 47.3
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 1.0e-59 234.6 176 67.0
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 2.2e-59 233.4 277 52.3
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 3.8e-59 232.6 178 64.6
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 1.1e-58 231.1 299 45.5
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 1.9e-58 230.3 295 45.8
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 1.2e-57 227.6 298 47.0
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 3.6e-57 226.1 151 74.8
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.5e-55 220.7 168 64.3
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 1.5e-55 220.7 304 41.8
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 1.8e-53 213.8 282 47.5
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.6e-52 210.7 290 42.4
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 1.6e-49 200.7 304 44.4
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 2.8e-49 199.9 321 41.4
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 3.0e-48 196.4 276 44.6
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.4e-45 187.6 121 74.4
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.4e-45 187.6 121 74.4
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 9.2e-45 184.9 284 41.2
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 1.6e-44 184.1 289 39.8
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 1.6e-44 184.1 293 38.9
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 5.9e-44 182.2 290 40.0
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 1.0e-43 181.4 101 85.1
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 3.9e-43 179.5 218 49.1
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 9.5e-42 174.9 177 54.2
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 1.2e-39 167.9 332 35.5
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 2.0e-39 167.2 97 81.4
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 9.8e-39 164.9 332 35.2
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 4.1e-37 159.5 327 35.2
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 2.0e-36 157.1 95 78.9
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 8.6e-35 151.8 290 35.5
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 8.6e-35 151.8 232 40.1
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 1.1e-34 151.4 212 42.9
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.0e-32 142.9 110 60.0
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 3.4e-31 139.8 160 48.1
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 3.5e-28 129.8 204 40.2
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 4.6e-28 129.4 122 58.2
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 6.6e-27 125.6 146 45.9
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 8.6e-27 125.2 146 47.3
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 1.1e-26 124.8 151 45.0
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 5.2e-24 115.9 100 56.0
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 2.7e-20 103.6 54 87.0
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 1.4e-16 91.3 51 82.4
Pp3c14_11090 Physcomitrium patens HOM05D005869 ORTHO05D007229 5.1e-11 72.8 115 39.1
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 8.7e-11 72.0 105 39.0
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 3.1e-08 63.5 53 58.5
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 2.9e-06 57.0 66 45.5
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 3.8e-06 56.6 50 54.0
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 8.4e-06 55.5 97 34.0


User provided reference genes

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