Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002887g0030 Nicotiana tabacum HOM05D000098 ORTHO05D000523 2.2e-39 165.2 87 100.0
Nitab4.5_0007150g0030 Nicotiana tabacum HOM05D000098 ORTHO05D000523 8.9e-33 143.3 87 88.5
Sopen02g038690 Solanum pennellii HOM05D000098 ORTHO05D000523 5.1e-28 127.5 84 85.7
PGSC0003DMG400020258 Solanum tuberosum HOM05D000098 ORTHO05D000523 5.1e-28 127.5 84 85.7
Peaxi162Scf00420g00051 Petunia axillaris HOM05D000098 ORTHO05D000523 1.9e-27 125.6 87 75.9
Solyc02g094050.4 Solanum lycopersicum HOM05D000098 ORTHO05D000523 4.3e-27 124.4 84 83.3
CAN.G473.90 Capsicum annuum HOM05D000098 ORTHO05D000523 5.6e-27 124.0 84 82.1
Eucgr.I01655 Eucalyptus grandis HOM05D000098 ORTHO05D000523 2.1e-18 95.5 58 77.6
PGR142G3943 Punica granatum HOM05D000098 ORTHO05D000523 3.4e-16 88.2 76 60.5
CANSAT64G2237 Cannabis sativa HOM05D000098 ORTHO05D000523 4.9e-15 84.3 42 90.5
Duzib264G0079 Durio zibethinus HOM05D000098 ORTHO05D000523 8.4e-15 83.6 69 62.3
Duzib147G1200 Durio zibethinus HOM05D000098 ORTHO05D000523 1.9e-14 82.4 77 59.7
Glyma.19G089200 Glycine max HOM05D000098 ORTHO05D000523 1.9e-14 82.4 46 80.4
Gohir.A07G227300 Gossypium hirsutum HOM05D000098 ORTHO05D000523 1.9e-14 82.4 75 62.7
Gohir.D07G234400 Gossypium hirsutum HOM05D000098 ORTHO05D000523 1.9e-14 82.4 81 59.3
COL.COLO4_17173 Corchorus olitorius HOM05D000098 ORTHO05D000523 2.4e-14 82.0 72 56.9
Actinidia05913 Actinidia chinensis HOM05D000098 ORTHO05D000523 4.2e-14 81.3 85 54.1
Thecc.04G033800 Theobroma cacao HOM05D000098 ORTHO05D000523 5.4e-14 80.9 55 69.1
Gorai.001G270000 Gossypium raimondii HOM05D000098 ORTHO05D000523 9.2e-14 80.1 75 57.3
Ciclev10016947m.g Citrus clementina HOM05D000098 ORTHO05D000523 1.6e-13 79.3 48 72.9
MD17G1013700 Malus domestica HOM05D000098 ORTHO05D000523 1.6e-13 79.3 43 81.4
Aqoxy3G01503 Aquilegia oxysepala HOM05D000098 ORTHO05D000523 2.1e-13 79.0 56 71.4
Manes.17G103900 Manihot esculenta HOM05D000098 ORTHO05D000523 2.7e-13 78.6 77 53.2
Phvul.004G054700 Phaseolus vulgaris HOM05D000098 ORTHO05D000523 3.5e-13 78.2 50 72.0
CiPaw.03G054100 Carya illinoinensis HOM05D000098 ORTHO05D000523 7.8e-13 77.0 43 76.7
MD09G1013000 Malus domestica HOM05D000098 ORTHO05D000523 1.0e-12 76.6 43 79.1
Prupe.3G304200 Prunus persica HOM05D000098 ORTHO05D000523 1.3e-12 76.3 43 79.1
QL02p071678 Quercus lobata HOM05D000098 ORTHO05D000523 1.3e-12 76.3 45 75.6
Lalb_Chr21g0317521 Lupinus albus HOM05D000098 ORTHO05D000523 3.0e-12 75.1 59 64.4
TPR.G2786 Trifolium pratense HOM05D000098 ORTHO05D000523 3.0e-12 75.1 50 70.0
Glyma.05G076700 Glycine max HOM05D000098 ORTHO05D000523 6.6e-12 73.9 105 44.8
Sabra16G0213100 Salix brachista HOM05D000098 ORTHO05D000523 8.7e-12 73.6 43 74.4
TAR629G2880 Trochodendron aralioides HOM05D000098 ORTHO05D000523 8.7e-12 73.6 46 69.6
GSVIVG01001807001 Vitis vinifera HOM05D000098 ORTHO05D000523 1.1e-11 73.2 48 66.7
Actinidia36188 Actinidia chinensis HOM05D000098 ORTHO05D000523 1.9e-11 72.4 56 64.3
HanXRQChr15g0486951 Helianthus annuus HOM05D000098 ORTHO05D000523 1.9e-11 72.4 54 68.5
VMungo1383G1312 Vigna mungo HOM05D000098 ORTHO05D000523 1.9e-11 72.4 35 88.6
VMungo0464G0786 Vigna mungo HOM05D000098 ORTHO05D000523 2.5e-11 72.0 41 75.6
SalBow4G1536 Salvia bowleyana HOM05D000098 ORTHO05D000523 3.3e-11 71.6 83 51.8
Atru.chr6.2537 Acer truncatum HOM05D000098 ORTHO05D000523 5.6e-11 70.9 41 75.6
arahy.Tifrunner.gnm1.ann1.5MI3H4 Arachis hypogaea HOM05D000098 ORTHO05D000523 5.6e-11 70.9 44 75.0
Ca_04430_v3 Cicer arietinum L. HOM05D000098 ORTHO05D000523 5.6e-11 70.9 50 64.0
MBI11_g07449_MAGBIO Magnolia biondii HOM05D000098 ORTHO05D000523 5.6e-11 70.9 64 50.0
Phvul.001G095100 Phaseolus vulgaris HOM05D000098 ORTHO05D000523 5.6e-11 70.9 78 51.3
THA.LOC104805333 Tarenaya hassleriana HOM05D000098 ORTHO05D000523 5.6e-11 70.9 59 59.3
Medtr6g023760 Medicago truncatula HOM05D000098 ORTHO05D000523 7.3e-11 70.5 40 75.0
vmacro05948 Vaccinium macrocarpon HOM05D000098 ORTHO05D000523 9.6e-11 70.1 44 68.2
arahy.Tifrunner.gnm1.ann1.19LA55 Arachis hypogaea HOM05D000098 ORTHO05D000523 1.3e-10 69.7 44 72.7
Cfa007242 Carpinus fangiana HOM05D000098 ORTHO05D000523 1.3e-10 69.7 80 48.8
Haze_14858 Corylus avellana HOM05D000098 ORTHO05D000523 1.3e-10 69.7 80 48.8
DCAR_002951 Daucus carota HOM05D000098 ORTHO05D000523 1.3e-10 69.7 56 64.3
HanXRQChr09g0256161 Helianthus annuus HOM05D000098 ORTHO05D000523 1.3e-10 69.7 37 83.8
Lsat_1_v5_gn_4_185141 Lactuca sativa HOM05D000098 ORTHO05D000523 1.3e-10 69.7 37 83.8
Potri.001G332200 Populus trichocarpa HOM05D000098 ORTHO05D000523 1.3e-10 69.7 87 46.0
RcHm_v2.0_Chr2g0175271 Rosa chinensis HOM05D000098 ORTHO05D000523 1.3e-10 69.7 38 81.6
Lalb_Chr02g0157751 Lupinus albus HOM05D000098 ORTHO05D000523 1.6e-10 69.3 44 68.2
Rhsim10G0007300 Rhododendron simsii HOM05D000098 ORTHO05D000523 1.6e-10 69.3 37 78.4
SalBow4G2319 Salvia bowleyana HOM05D000098 ORTHO05D000523 1.6e-10 69.3 53 62.3
Lju41A51T45 Lonicera japonica HOM05D000098 ORTHO05D000523 2.1e-10 68.9 41 73.2
AL5G16320 Arabidopsis lyrata HOM05D000098 ORTHO05D000523 2.8e-10 68.6 43 65.1
Carub.0005s0543 Capsella rubella HOM05D000098 ORTHO05D000523 2.8e-10 68.6 43 65.1
CARHR148410 Cardamine hirsuta HOM05D000098 ORTHO05D000523 2.8e-10 68.6 54 59.3
Cc07_g00690 Coffea canephora HOM05D000098 ORTHO05D000523 2.8e-10 68.6 52 67.3
FAN09G1347 Fragaria x ananassa HOM05D000098 ORTHO05D000523 2.8e-10 68.6 34 88.2
Psat0s1551g0240 Pisum sativum HOM05D000098 ORTHO05D000523 2.8e-10 68.6 43 69.8
FvH4_6g53210 Fragaria vesca HOM05D000098 ORTHO05D000523 3.6e-10 68.2 38 78.9
FAN05G1100 Fragaria x ananassa HOM05D000098 ORTHO05D000523 3.6e-10 68.2 38 78.9
Hma1.2p1_0279F.1_g112620 Hydrangea macrophylla HOM05D000098 ORTHO05D000523 3.6e-10 68.2 43 67.4
EL10Ac2g02843 Beta vulgaris HOM05D014602 ORTHO05D000523 4.8e-10 67.8 44 68.2
MELO3C008198.2 Cucumis melo HOM05D000098 ORTHO05D000523 4.8e-10 67.8 42 71.4
AT3G27200 Arabidopsis thaliana HOM05D000098 ORTHO05D000523 6.2e-10 67.4 40 67.5
Dinv25668 Davidia involucrata HOM05D000098 ORTHO05D000523 6.2e-10 67.4 89 44.9
ECA232G2595 Erigeron canadensis HOM05D000172 ORTHO05D000781 6.2e-10 67.4 41 73.2
FAN14G0530 Fragaria x ananassa HOM05D000098 ORTHO05D000523 8.1e-10 67.0 45 73.3
TWI36G1629 Tripterygium wilfordii HOM05D000098 ORTHO05D000523 8.1e-10 67.0 40 72.5
CsaV3_2G034170 Cucumis sativus L. HOM05D000098 ORTHO05D000523 1.1e-09 66.6 42 69.0
Thhalv10005008m.g Eutrema salsugineum HOM05D000098 ORTHO05D000523 1.1e-09 66.6 41 65.9
FAN02G2652 Fragaria x ananassa HOM05D000098 ORTHO05D000523 1.1e-09 66.6 45 73.3
Sp2g16330 Schrenkiella parvula HOM05D000098 ORTHO05D000523 1.1e-09 66.6 54 59.3
TPR.G28878 Trifolium pratense HOM05D000098 ORTHO05D000523 1.1e-09 66.6 43 67.4
BcaC03g17436 Brassica carinata HOM05D000098 ORTHO05D000523 1.4e-09 66.2 41 65.9
C02p53840 Brassica napus HOM05D000098 ORTHO05D000523 1.4e-09 66.2 41 65.9
BolC2t11452H Brassica oleracea HOM05D000098 ORTHO05D000523 1.4e-09 66.2 41 65.9
Migut.F00075 Erythranthe guttata HOM05D000098 ORTHO05D000523 1.4e-09 66.2 40 67.5
Nn6g33805 Nelumbo nucifera HOM05D000098 ORTHO05D000523 1.4e-09 66.2 59 55.9
ClCG11G007050 Citrullus lanatus HOM05D000098 ORTHO05D000523 2.4e-09 65.5 40 70.0
Lj2g0016183 Lotus japonicus HOM05D000098 ORTHO05D000523 3.1e-09 65.1 33 78.8
Sc07g0004130 Simmondsia chinensis HOM05D000098 ORTHO05D000523 4.0e-09 64.7 35 71.4
Sed0011368 Sechium edule HOM05D000098 ORTHO05D000523 1.2e-08 63.2 32 78.1
BcaC06g33844 Brassica carinata HOM05D000098 ORTHO05D000523 1.5e-08 62.8 61 52.5
BcaC06g33847 Brassica carinata HOM05D000098 ORTHO05D000523 1.5e-08 62.8 61 52.5
A06p41410 Brassica napus HOM05D000098 ORTHO05D000523 1.5e-08 62.8 57 50.9
C07p36250 Brassica napus HOM05D000098 ORTHO05D000523 1.5e-08 62.8 57 50.9
BolC7t44139H Brassica oleracea HOM05D000098 ORTHO05D000523 1.5e-08 62.8 57 50.9
BraA06t27066Z Brassica rapa HOM05D000098 ORTHO05D000523 1.5e-08 62.8 57 50.9
PSO478G3906 Papaver somniferum HOM05D000098 ORTHO05D000523 1.5e-08 62.8 45 62.2
MSTRG.24088 Avicennia marina HOM05D000098 ORTHO05D000523 2.6e-08 62.0 83 42.2
ATR0561G220 Amborella trichopoda HOM05D000098 ORTHO05D000523 5.8e-08 60.8 71 43.7
PSO017G3796 Papaver somniferum HOM05D000098 ORTHO05D000523 5.8e-08 60.8 42 64.3
AUR62026833 Chenopodium quinoa HOM05D000098 ORTHO05D000523 7.6e-08 60.5 51 56.9
CANSAT64G1319 Cannabis sativa HOM05D000098 ORTHO05D000523 9.9e-08 60.1 58 46.6
AUR62037219 Chenopodium quinoa HOM05D000098 ORTHO05D000523 9.9e-08 60.1 33 75.8
Oeu041961.1 Olea europaea HOM05D000098 ORTHO05D000523 9.9e-08 60.1 41 63.4
MBI02_g29697_MAGBIO Magnolia biondii HOM05D000098 ORTHO05D000523 1.3e-07 59.7 60 50.0
QL08p057218 Quercus lobata HOM05D000098 ORTHO05D000523 1.7e-07 59.3 53 50.9
SGA_v2.0_scaffold18G08529 Striga asiatica HOM05D000098 ORTHO05D000523 1.7e-07 59.3 41 63.4
CSS0015388 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D000523 2.2e-07 58.9 58 48.3
Aa31LG2G5210 Aethionema arabicum HOM05D000098 ORTHO05D000523 2.9e-07 58.5 51 54.9
CSS0028576 Camellia sinensis var. sinensis HOM05D000098 ORTHO05D000523 6.4e-07 57.4 58 48.3
COL.COLO4_13000 Corchorus olitorius HOM05D000098 ORTHO05D000523 1.1e-06 56.6 50 52.0
CARHR148400 Cardamine hirsuta HOM05D000098 ORTHO05D000523 1.9e-06 55.8 40 52.5
Actinidia12493 Actinidia chinensis HOM05D000098 ORTHO05D000523 2.4e-06 55.5 41 53.7
Sc21g0001760 Simmondsia chinensis HOM05D000098 ORTHO05D000523 2.4e-06 55.5 42 52.4
TAR627G0832 Trochodendron aralioides HOM05D000098 ORTHO05D000523 2.4e-06 55.5 50 48.0
BcaC02g07939 Brassica carinata HOM05D000098 ORTHO05D000523 3.2e-06 55.1 59 45.8
C04p61730 Brassica napus HOM05D000098 ORTHO05D000523 3.2e-06 55.1 59 45.8
BolC4t27656H Brassica oleracea HOM05D000098 ORTHO05D000523 3.2e-06 55.1 59 45.8
CiPaw.03G163500 Carya illinoinensis HOM05D000098 ORTHO05D000523 3.2e-06 55.1 54 44.4
Gorai.007G251100 Gossypium raimondii HOM05D000098 ORTHO05D001228 3.2e-06 55.1 73 39.7
MD17G1091800 Malus domestica HOM05D000098 ORTHO05D000523 3.2e-06 55.1 60 41.7
Atru.chr6.3131 Acer truncatum HOM05D000098 ORTHO05D000523 4.2e-06 54.7 54 50.0
CARHR126130 Cardamine hirsuta HOM05D000098 ORTHO05D000523 4.2e-06 54.7 61 47.5
TWI36G0512 Tripterygium wilfordii HOM05D000098 ORTHO05D000523 4.2e-06 54.7 55 45.5
Gohir.A11G224208 Gossypium hirsutum HOM05D000098 ORTHO05D001228 5.4e-06 54.3 73 41.1
Gohir.D13G063300 Gossypium hirsutum HOM05D000098 ORTHO05D000523 5.4e-06 54.3 52 50.0
Gorai.013G071700 Gossypium raimondii HOM05D000098 ORTHO05D000523 5.4e-06 54.3 52 50.0
Sc12g0002420 Simmondsia chinensis HOM05D000098 ORTHO05D000523 5.4e-06 54.3 46 47.8
Thecc.02G162900 Theobroma cacao HOM05D000098 ORTHO05D000523 5.4e-06 54.3 39 53.8
Actinidia24275 Actinidia chinensis HOM05D000098 ORTHO05D000523 7.1e-06 53.9 61 47.5
CsaV3_2G029900 Cucumis sativus L. HOM05D000098 ORTHO05D000523 7.1e-06 53.9 63 47.6
Dinv18537 Davidia involucrata HOM05D000098 ORTHO05D000523 7.1e-06 53.9 41 53.7
Duzib052G1086 Durio zibethinus HOM05D000098 ORTHO05D000523 7.1e-06 53.9 39 53.8
Thhalv10017076m.g Eutrema salsugineum HOM05D000098 ORTHO05D000523 7.1e-06 53.9 59 45.8
Gohir.A12G135000 Gossypium hirsutum HOM05D000098 ORTHO05D000523 7.1e-06 53.9 57 45.6
Gohir.D12G138700 Gossypium hirsutum HOM05D000098 ORTHO05D000523 7.1e-06 53.9 57 45.6
Gorai.008G150100 Gossypium raimondii HOM05D000098 ORTHO05D000523 7.1e-06 53.9 57 45.6
MD09G1104100 Malus domestica HOM05D000098 ORTHO05D000523 7.1e-06 53.9 58 43.1
Sc12g0002410 Simmondsia chinensis HOM05D000098 ORTHO05D000523 7.1e-06 53.9 67 40.3
BcaB01g03987 Brassica carinata HOM05D000098 ORTHO05D000523 9.3e-06 53.5 59 44.1
BcaC02g11333 Brassica carinata HOM05D000098 ORTHO05D000523 9.3e-06 53.5 59 45.8
A04p24800 Brassica napus HOM05D000098 ORTHO05D000523 9.3e-06 53.5 61 44.3
C04p17310 Brassica napus HOM05D000098 ORTHO05D000523 9.3e-06 53.5 59 45.8
BolC4t23283H Brassica oleracea HOM05D000098 ORTHO05D000523 9.3e-06 53.5 59 45.8
BraA04t17997Z Brassica rapa HOM05D000098 ORTHO05D000523 9.3e-06 53.5 61 44.3
CiPaw.04G118500 Carya illinoinensis HOM05D000098 ORTHO05D000523 9.3e-06 53.5 40 52.5
Dinv10911 Davidia involucrata HOM05D000098 ORTHO05D000523 9.3e-06 53.5 41 53.7
Peaxi162Scf00012g03011 Petunia axillaris HOM05D000098 ORTHO05D000523 9.3e-06 53.5 54 50.0
QL08p033974 Quercus lobata HOM05D000098 ORTHO05D000523 9.3e-06 53.5 58 46.6
Zm00001eb307480 Zea mays HOM05D000098 ORTHO05D000523 9.3e-06 53.5 55 45.5


User provided reference genes

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