Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002874g0100 Nicotiana tabacum HOM05D005527 ORTHO05D006480 1.7e-174 615.9 315 100.0
Nitab4.5_0001818g0050 Nicotiana tabacum HOM05D005527 ORTHO05D006480 5.1e-155 551.2 309 92.9
Sopen08g029750 Solanum pennellii HOM05D005527 ORTHO05D006480 1.1e-144 516.9 310 86.1
Solyc08g081430.3 Solanum lycopersicum HOM05D005527 ORTHO05D006480 1.8e-144 516.2 310 85.5
CAN.G532.17 Capsicum annuum HOM05D005527 ORTHO05D006480 3.1e-136 488.8 310 82.3
Peaxi162Scf00392g00124 Petunia axillaris HOM05D005527 ORTHO05D006480 3.5e-135 485.3 309 81.9
PGSC0003DMG401012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 9.8e-106 387.5 205 94.1
Hma1.2p1_1740F.1_g300050 Hydrangea macrophylla HOM05D005527 ORTHO05D006480 7.3e-101 371.3 311 63.3
GSVIVG01022807001 Vitis vinifera HOM05D005527 ORTHO05D006480 2.8e-100 369.4 314 63.1
Dinv43641 Davidia involucrata HOM05D005527 ORTHO05D006480 8.0e-100 367.9 310 63.5
Actinidia12159 Actinidia chinensis HOM05D005527 ORTHO05D006480 4.0e-99 365.5 313 62.9
Actinidia40393 Actinidia chinensis HOM05D005527 ORTHO05D006480 1.3e-97 360.5 313 62.0
CSS0037426 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 6.4e-97 358.2 312 61.9
Rhsim07G0034300 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.2e-92 344.0 321 60.1
MSTRG.4922 Avicennia marina HOM05D005527 ORTHO05D006480 1.1e-91 340.9 310 60.6
Lju41A43T28 Lonicera japonica HOM05D005527 ORTHO05D006480 1.1e-91 340.9 310 62.3
Potri.014G054400 Populus trichocarpa HOM05D005527 ORTHO05D006480 3.1e-91 339.3 313 60.1
vmacro13481 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 5.2e-91 338.6 316 60.4
Nn6g33862 Nelumbo nucifera HOM05D005527 ORTHO05D006480 2.0e-90 336.7 320 58.8
vmacro21047 Vaccinium macrocarpon HOM05D005527 ORTHO05D006480 2.0e-90 336.7 245 71.4
TAR375G0575 Trochodendron aralioides HOM05D005527 ORTHO05D006480 4.4e-90 335.5 316 56.3
Manes.05G052500 Manihot esculenta HOM05D005527 ORTHO05D006480 5.8e-90 335.1 312 59.0
Sabra14G0040300 Salix brachista HOM05D005527 ORTHO05D006480 3.7e-89 332.4 357 54.1
Migut.N01756 Erythranthe guttata HOM05D005527 ORTHO05D006480 1.1e-88 330.9 295 60.3
SGA_v2.0_scaffold116G32305 Striga asiatica HOM05D005527 ORTHO05D006480 2.4e-88 329.7 310 58.1
TWI59G1399 Tripterygium wilfordii HOM05D005527 ORTHO05D006480 4.6e-87 325.5 315 57.5
Eucgr.D01510 Eucalyptus grandis HOM05D005527 ORTHO05D006480 1.1e-85 320.9 315 59.0
Ciclev10021461m.g Citrus clementina HOM05D005527 ORTHO05D006480 1.9e-85 320.1 310 59.4
CsaV3_6G004490 Cucumis sativus L. HOM05D005527 ORTHO05D006480 7.3e-85 318.2 246 66.3
MELO3C019920.2 Cucumis melo HOM05D005527 ORTHO05D006480 2.8e-84 316.2 223 70.9
Cc00_g20470 Coffea canephora HOM05D005527 ORTHO05D006480 3.6e-84 315.8 312 56.4
DCAR_025077 Daucus carota HOM05D005527 ORTHO05D006480 8.1e-84 314.7 237 67.1
CiPaw.03G272900 Carya illinoinensis HOM05D005527 ORTHO05D006480 8.9e-83 311.2 257 64.2
Potri.002G140700 Populus trichocarpa HOM05D005527 ORTHO05D006480 1.2e-82 310.8 186 82.8
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 7.6e-82 308.1 267 62.2
Gohir.D08G068700 Gossypium hirsutum HOM05D005527 ORTHO05D006480 7.6e-82 308.1 309 54.7
Gorai.004G072000 Gossypium raimondii HOM05D005527 ORTHO05D006480 9.9e-82 307.8 309 54.7
Thecc.01G389600 Theobroma cacao HOM05D005527 ORTHO05D006480 3.8e-81 305.8 310 56.1
Cfa016649 Carpinus fangiana HOM05D002184 ORTHO05D006480 4.9e-81 305.4 257 63.4
Gohir.A08G059500 Gossypium hirsutum HOM05D005527 ORTHO05D006480 8.4e-81 304.7 220 66.8
BcaB01g02205 Brassica carinata HOM05D005527 ORTHO05D006480 1.4e-80 303.9 280 60.4
C09p00040 Brassica napus HOM05D005527 ORTHO05D006480 1.9e-80 303.5 208 74.5
BraA09t35678Z Brassica rapa HOM05D005527 ORTHO05D006480 1.9e-80 303.5 208 74.5
MD05G1185000 Malus domestica HOM05D005527 ORTHO05D006480 2.4e-80 303.1 252 63.9
SalBow5G2512 Salvia bowleyana HOM05D005527 ORTHO05D006480 2.4e-80 303.1 273 59.3
Duzib133G0823 Durio zibethinus HOM05D005527 ORTHO05D006480 3.2e-80 302.8 221 67.0
AT4G00026 Arabidopsis thaliana HOM05D005527 ORTHO05D006480 4.1e-80 302.4 209 73.7
Prupe.8G211200 Prunus persica HOM05D005527 ORTHO05D006480 4.1e-80 302.4 247 63.2
SalBow5G5418 Salvia bowleyana HOM05D005527 ORTHO05D006480 4.1e-80 302.4 233 64.8
Lsat_1_v5_gn_3_129561 Lactuca sativa HOM05D005527 ORTHO05D006480 7.1e-80 301.6 217 70.5
Duzib138G0956 Durio zibethinus HOM05D005527 ORTHO05D006480 9.2e-80 301.2 220 66.8
Thhalv10028875m.g Eutrema salsugineum HOM05D005527 ORTHO05D006480 9.2e-80 301.2 279 59.9
AL6G53490 Arabidopsis lyrata HOM05D005527 ORTHO05D006480 1.2e-79 300.8 268 60.4
THA.LOC104814072 Tarenaya hassleriana HOM05D005527 ORTHO05D006480 2.1e-79 300.1 232 66.8
BolC9t52939H Brassica oleracea HOM05D005527 ORTHO05D006480 2.7e-79 299.7 280 60.4
CDE11G0157 Ceratophyllum demersum HOM05D005527 ORTHO05D006480 2.7e-79 299.7 182 81.3
CARHR248050 Cardamine hirsuta HOM05D005527 ORTHO05D006480 7.8e-79 298.1 198 75.8
Sabra02G0109800 Salix brachista HOM05D005527 ORTHO05D006480 7.8e-79 298.1 239 64.9
BcaB01g02184 Brassica carinata HOM05D005527 ORTHO05D006480 1.0e-78 297.7 221 69.2
Oeu063991.1 Olea europaea HOM05D005527 ORTHO05D006480 1.7e-78 297.0 236 67.4
Cpa.g.sc5.224 Carica papaya HOM05D005527 ORTHO05D006480 2.3e-78 296.6 216 68.5
MD10G1173000 Malus domestica HOM05D005527 ORTHO05D006480 2.3e-78 296.6 221 66.5
Oeu018737.2 Olea europaea HOM05D005527 ORTHO05D006480 3.0e-78 296.2 286 58.0
QL09p042955 Quercus lobata HOM05D005527 ORTHO05D006480 3.9e-78 295.8 230 64.8
Carub.0006s3720 Capsella rubella HOM05D005527 ORTHO05D006480 8.7e-78 294.7 268 60.1
CANSAT01G0875 Cannabis sativa HOM05D005527 ORTHO05D006480 5.6e-77 292.0 218 66.1
CANSAT01G3075 Cannabis sativa HOM05D005527 ORTHO05D006480 5.6e-77 292.0 218 66.1
COL.COLO4_12437 Corchorus olitorius HOM05D005527 ORTHO05D006480 1.2e-76 290.8 317 54.3
Sed0026275 Sechium edule HOM05D005527 ORTHO05D006480 1.6e-76 290.4 246 63.0
unitig_0.g2761 Utricularia gibba HOM05D005527 ORTHO05D006480 6.2e-76 288.5 202 70.8
AUR62022137 Chenopodium quinoa HOM05D005527 ORTHO05D006480 1.8e-75 287.0 198 71.7
AUR62001190 Chenopodium quinoa HOM05D005527 ORTHO05D006480 2.4e-75 286.6 198 71.7
PGR004G2692 Punica granatum HOM05D005527 ORTHO05D006480 5.2e-75 285.4 318 53.1
arahy.Tifrunner.gnm1.ann1.TVCQ13 Arachis hypogaea HOM05D005527 ORTHO05D006480 3.4e-74 282.7 192 70.3
EL10Ac7g17978 Beta vulgaris HOM05D005527 ORTHO05D006480 3.4e-74 282.7 201 69.7
Phvul.L007001 Phaseolus vulgaris HOM05D005527 ORTHO05D006480 3.4e-74 282.7 186 73.7
Sp6g00070 Schrenkiella parvula HOM05D005527 ORTHO05D006480 3.4e-74 282.7 253 60.9
ClCG08G008500 Citrullus lanatus HOM05D005527 ORTHO05D006480 9.9e-74 281.2 260 59.6
A09p47660 Brassica napus HOM05D005527 ORTHO05D006480 1.3e-73 280.8 276 56.9
PSO063G6553 Papaver somniferum HOM05D005527 ORTHO05D006480 1.7e-73 280.4 216 68.1
Ca_09921_v3 Cicer arietinum L. HOM05D005527 ORTHO05D006480 3.8e-73 279.3 189 73.0
C08p29870 Brassica napus HOM05D005527 ORTHO05D006480 4.9e-73 278.9 193 73.1
ECA240G4071 Erigeron canadensis HOM05D005527 ORTHO05D006480 6.4e-73 278.5 211 68.2
Dinv44079 Davidia involucrata HOM05D005527 ORTHO05D006480 1.4e-72 277.3 190 75.8
Rhsim01G0137400 Rhododendron simsii HOM05D005527 ORTHO05D006480 1.9e-72 276.9 221 66.5
VMungo0720G0088 Vigna mungo HOM05D005527 ORTHO05D006480 1.9e-72 276.9 187 73.3
Aa31LG5G80 Aethionema arabicum HOM05D005527 ORTHO05D006480 4.2e-72 275.8 197 72.6
RcHm_v2.0_Chr6g0285911 Rosa chinensis HOM05D005527 ORTHO05D006480 4.2e-72 275.8 249 58.6
HPP92_021019 Vanilla planifolia HOM05D005527 ORTHO05D006480 4.2e-72 275.8 187 74.3
arahy.Tifrunner.gnm1.ann1.PVA962 Arachis hypogaea HOM05D005527 ORTHO05D006480 2.1e-71 273.5 205 64.9
BraA09t40222Z Brassica rapa HOM05D005527 ORTHO05D006480 2.7e-71 273.1 194 71.6
Ah.08g218760 Amaranthus hybridus HOM05D005527 ORTHO05D006480 3.5e-71 272.7 201 67.2
Lalb_Chr21g0311731 Lupinus albus HOM05D005527 ORTHO05D006480 3.5e-71 272.7 192 71.9
Glyma.20G215800 Glycine max HOM05D005527 ORTHO05D006480 4.6e-71 272.3 181 72.4
SGA_v2.0_scaffold44G16622 Striga asiatica HOM05D005527 ORTHO05D006480 7.8e-71 271.6 200 69.0
Psat6g111240 Pisum sativum HOM05D005527 ORTHO05D006480 1.0e-70 271.2 192 70.8
Medtr1g077430 Medicago truncatula HOM05D005527 ORTHO05D006480 3.0e-70 269.6 202 69.3
Glyma.10G175000 Glycine max HOM05D005527 ORTHO05D006480 6.6e-70 268.5 216 64.4
TPR.G8872 Trifolium pratense HOM05D005527 ORTHO05D006480 6.6e-70 268.5 236 62.7
Lalb_Chr02g0149681 Lupinus albus HOM05D005527 ORTHO05D006480 1.9e-69 266.9 230 60.9
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.3e-69 265.8 246 57.7
FvH4_7g06430 Fragaria vesca HOM05D005527 ORTHO05D006480 7.3e-69 265.0 248 56.9
FAN01G2831 Fragaria x ananassa HOM05D005527 ORTHO05D006480 9.6e-69 264.6 249 57.4
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.3e-68 264.2 246 57.3
Lj5g0022618 Lotus japonicus HOM05D005527 ORTHO05D006480 1.6e-68 263.8 196 68.4
Zm00001eb010980 Zea mays HOM05D005527 ORTHO05D006480 3.1e-67 259.6 248 60.9
ATR0767G019 Amborella trichopoda HOM05D005527 ORTHO05D006480 1.5e-66 257.3 166 73.5
SHI13602 Sapria himalayana HOM05D005527 ORTHO05D006480 3.4e-66 256.1 187 67.9
FAN03G2170 Fragaria x ananassa HOM05D005527 ORTHO05D006480 8.4e-65 251.5 246 55.7
SMO201G0136 Selaginella moellendorffii HOM05D005527 ORTHO05D006480 1.8e-62 243.8 158 71.5
AagrBONN_evm.TU.Sc2ySwM_117.1379 Anthoceros agrestis HOM05D005527 ORTHO05D006480 2.5e-61 240.0 204 60.3
Aqoxy3G02804 Aquilegia oxysepala HOM05D000030 ORTHO05D000023 6.2e-60 235.3 202 61.9
DCAR_025031 Daucus carota HOM05D005527 ORTHO05D006480 1.8e-59 233.8 227 56.8
Pp3c2_16760 Physcomitrium patens HOM05D005527 ORTHO05D006480 5.3e-59 232.3 200 63.0
BolC8t50598H Brassica oleracea HOM05D005527 ORTHO05D006480 1.3e-57 227.6 158 74.7
Mapoly0168s0006 Marchantia polymorpha HOM05D005527 ORTHO05D006480 1.7e-57 227.3 189 58.7
Nn1g00907 Nelumbo nucifera HOM05D005527 ORTHO05D006480 8.4e-57 224.9 131 81.7
HanXRQChr13g0422791 Helianthus annuus HOM05D005527 ORTHO05D006480 3.5e-55 219.5 167 70.1
BcaC07g39791 Brassica carinata HOM05D005527 ORTHO05D006480 7.9e-55 218.4 153 72.5
CBR_g6321 Chara braunii HOM05D005527 ORTHO05D000048 2.3e-54 216.9 173 59.5
Hund14311 Selenicereus undatus HOM05D005527 ORTHO05D006480 4.3e-53 212.6 166 65.7
BcaB02g08455 Brassica carinata HOM05D005527 ORTHO05D006480 2.0e-50 203.8 153 69.3
CSS0049638 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 4.9e-49 199.1 106 88.7
SEGI_20492 Sequoiadendron giganteum HOM05D005527 ORTHO05D006480 3.7e-44 183.0 115 74.8
Oeu018739.1 Olea europaea HOM05D005527 ORTHO05D006480 7.9e-39 165.2 90 85.6
FAN23G2762 Fragaria x ananassa HOM05D005527 ORTHO05D006480 6.9e-35 152.1 252 40.9
CSS0016661 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.3e-33 147.9 128 60.9
CSS0044998 Camellia sinensis var. sinensis HOM05D005527 ORTHO05D006480 1.7e-33 147.5 126 61.1
Haze_19655 Corylus avellana HOM05D002184 ORTHO05D002379 4.7e-31 139.4 90 70.0
A09p00830 Brassica napus HOM05D005527 ORTHO05D006480 1.0e-30 138.3 123 65.9
FAN19G1210 Fragaria x ananassa HOM05D005527 ORTHO05D006480 8.8e-30 135.2 272 38.2
MCO09G641 Micromonas commoda HOM05D005527 ORTHO05D006480 8.2e-28 128.6 133 46.6
Cre09.g405550 Chlamydomonas reinhardtii HOM05D005527 ORTHO05D006480 9.1e-27 125.2 163 38.7
CANSAT01G1020 Cannabis sativa HOM05D001299 ORTHO05D001985 2.0e-26 124.0 129 50.4
PRCOL_00001529 Prasinoderma coloniale HOM05D005527 ORTHO05D006480 2.6e-26 123.6 137 45.3
PGSC0003DMG402012327 Solanum tuberosum HOM05D005527 ORTHO05D006480 1.3e-25 121.3 87 73.6
Sc14g0006170 Simmondsia chinensis HOM05D005527 ORTHO05D006480 5.0e-25 119.4 111 57.7
Os03g0253800 Oryza sativa ssp. japonica HOM05D005527 ORTHO05D006480 4.1e-19 99.8 90 62.2
ECA240G0336 Erigeron canadensis HOM05D002424 ORTHO05D002640 2.1e-15 87.4 85 56.5
FAN28G0427 Fragaria x ananassa HOM05D005527 ORTHO05D006480 1.8e-14 84.3 192 38.0
Glyma.06G247300 Glycine max HOM05D006695 ORTHO05D008239 2.7e-10 70.5 72 50.0
Glyma.08G276700 Glycine max HOM05D005527 ORTHO05D006480 6.5e-09 65.9 61 50.8
HanXRQChr11g0351331 Helianthus annuus HOM05D005527 ORTHO05D006480 9.4e-08 62.0 56 58.9


User provided reference genes

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