Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002874g0090 Nicotiana tabacum HOM05D006948 ORTHO05D008703 6.4e-51 203.8 100 100.0
Nitab4.5_0001818g0020 Nicotiana tabacum HOM05D006948 ORTHO05D008703 1.2e-33 146.4 76 94.7
Peaxi162Scf00392g00125 Petunia axillaris HOM05D006948 ORTHO05D008703 1.1e-29 133.3 76 84.2
Solyc01g090500.4 Solanum lycopersicum HOM05D006948 ORTHO05D008703 3.9e-24 114.8 76 72.4
PGSC0003DMG401026039 Solanum tuberosum HOM05D006948 ORTHO05D008703 8.7e-24 113.6 76 71.1
Sopen01g036290 Solanum pennellii HOM05D006948 ORTHO05D008703 1.1e-23 113.2 76 72.4
Oeu035671.1 Olea europaea HOM05D006948 ORTHO05D008703 1.9e-18 95.9 82 59.8
BcaC07g40569 Brassica carinata HOM05D006948 ORTHO05D008703 4.6e-17 91.3 103 49.5
Ciclev10023020m.g Citrus clementina HOM05D006948 ORTHO05D008703 4.6e-17 91.3 72 65.3
MELO3C005977.2 Cucumis melo HOM05D006948 ORTHO05D008703 7.9e-17 90.5 99 50.5
A09p52730 Brassica napus HOM05D006948 ORTHO05D008703 1.3e-16 89.7 68 60.3
C08p35470 Brassica napus HOM05D006948 ORTHO05D008703 1.3e-16 89.7 106 47.2
Hund17076 Selenicereus undatus HOM05D006948 ORTHO05D008703 2.3e-16 89.0 75 61.3
BcaC07g40567 Brassica carinata HOM05D006948 ORTHO05D008703 8.7e-16 87.0 85 52.9
QL04p033368 Quercus lobata HOM05D006948 ORTHO05D008703 1.1e-15 86.7 88 51.1
Aa31LG10G14620 Aethionema arabicum HOM05D006948 ORTHO05D008703 1.5e-15 86.3 70 61.4
ClCG05G000390 Citrullus lanatus HOM05D006948 ORTHO05D008703 1.9e-15 85.9 75 56.0
Sp5g02740 Schrenkiella parvula HOM05D006948 ORTHO05D008703 1.9e-15 85.9 86 50.0
Carub.0005s2721 Capsella rubella HOM05D006948 ORTHO05D008703 2.5e-15 85.5 69 59.4
Manes.05G052600 Manihot esculenta HOM05D006948 ORTHO05D008703 2.5e-15 85.5 59 69.5
HanXRQChr06g0168761 Helianthus annuus HOM05D006948 ORTHO05D008703 3.3e-15 85.1 61 70.5
Haze_02785 Corylus avellana HOM05D006948 ORTHO05D008703 5.6e-15 84.3 77 57.1
AT3G60480 Arabidopsis thaliana HOM05D006948 ORTHO05D008703 7.4e-15 84.0 84 51.2
Cc00_g20460 Coffea canephora HOM05D006948 ORTHO05D008703 7.4e-15 84.0 81 55.6
EL10Ac1g00789 Beta vulgaris HOM05D006948 ORTHO05D008703 9.6e-15 83.6 66 63.6
CARHR170860 Cardamine hirsuta HOM05D006948 ORTHO05D008703 9.6e-15 83.6 87 47.1
AUR62013722 Chenopodium quinoa HOM05D006948 ORTHO05D008703 9.6e-15 83.6 60 61.7
AUR62018049 Chenopodium quinoa HOM05D006948 ORTHO05D008703 9.6e-15 83.6 61 60.7
AUR62023432 Chenopodium quinoa HOM05D006948 ORTHO05D008703 9.6e-15 83.6 61 60.7
AL5G42750 Arabidopsis lyrata HOM05D006948 ORTHO05D008703 1.3e-14 83.2 83 49.4
CANSAT21G1424 Cannabis sativa HOM05D006948 ORTHO05D008703 2.1e-14 82.4 80 58.8
Cpa.g.sc5.223 Carica papaya HOM05D006948 ORTHO05D008703 2.1e-14 82.4 72 56.9
Lsat_1_v5_gn_7_10441 Lactuca sativa HOM05D006948 ORTHO05D008703 2.8e-14 82.0 76 56.6
TWI59G0066 Tripterygium wilfordii HOM05D006948 ORTHO05D008703 2.8e-14 82.0 61 67.2
CsaV3_3G007550 Cucumis sativus L. HOM05D006948 ORTHO05D008703 6.2e-14 80.9 72 56.9
Sabra14G0040200 Salix brachista HOM05D006948 ORTHO05D008703 1.4e-13 79.7 57 68.4
ECA236G1236 Erigeron canadensis HOM05D006948 ORTHO05D008703 1.8e-13 79.3 60 63.3
BcaC07g42775 Brassica carinata HOM05D006948 ORTHO05D008703 2.4e-13 79.0 79 53.2
Cfa012992 Carpinus fangiana HOM05D006948 ORTHO05D008703 2.4e-13 79.0 72 59.7
Gohir.A08G029800 Gossypium hirsutum HOM05D006948 ORTHO05D008703 2.4e-13 79.0 77 57.1
QL04p031942 Quercus lobata HOM05D006948 ORTHO05D008703 2.4e-13 79.0 82 51.2
Thecc.01G389700 Theobroma cacao HOM05D006948 ORTHO05D008703 2.4e-13 79.0 77 55.8
Thecc.01G390200 Theobroma cacao HOM05D006948 ORTHO05D008703 2.4e-13 79.0 77 55.8
Haze_02790 Corylus avellana HOM05D006948 ORTHO05D008703 3.1e-13 78.6 72 58.3
Duzib138G1111 Durio zibethinus HOM05D006948 ORTHO05D008703 3.1e-13 78.6 77 57.1
Potri.014G054300 Populus trichocarpa HOM05D006948 ORTHO05D008703 3.1e-13 78.6 79 54.4
Atru.chr4.2323 Acer truncatum HOM05D006948 ORTHO05D008703 4.0e-13 78.2 79 58.2
CiPaw.13G028600 Carya illinoinensis HOM05D006948 ORTHO05D008703 4.0e-13 78.2 72 56.9
COL.COLO4_12436 Corchorus olitorius HOM05D006948 ORTHO05D008703 6.9e-13 77.4 78 55.1
Gohir.D08G040600 Gossypium hirsutum HOM05D006948 ORTHO05D008703 6.9e-13 77.4 61 62.3
Gorai.004G039500 Gossypium raimondii HOM05D006948 ORTHO05D008703 6.9e-13 77.4 61 62.3
Psat3g154680 Pisum sativum HOM05D006948 ORTHO05D008703 6.9e-13 77.4 72 55.6
QL04p032282 Quercus lobata HOM05D006948 ORTHO05D008703 6.9e-13 77.4 68 54.4
QL04p032169 Quercus lobata HOM05D006948 ORTHO05D008703 1.2e-12 76.6 67 55.2
QL04p033225 Quercus lobata HOM05D006948 ORTHO05D008703 1.2e-12 76.6 67 55.2
BolC8t51138H Brassica oleracea HOM05D006948 ORTHO05D008703 1.5e-12 76.3 61 60.7
SHI13603 Sapria himalayana HOM05D006948 ORTHO05D008703 2.0e-12 75.9 77 48.1
THA.LOC104817199 Tarenaya hassleriana HOM05D006948 ORTHO05D008703 2.6e-12 75.5 62 58.1
SalBow5G2465 Salvia bowleyana HOM05D006948 ORTHO05D008703 3.4e-12 75.1 87 54.0
SalBow5G5528 Salvia bowleyana HOM05D006948 ORTHO05D008703 3.4e-12 75.1 87 54.0
Prupe.2G124300 Prunus persica HOM05D006948 ORTHO05D008703 4.5e-12 74.7 81 50.6
arahy.Tifrunner.gnm1.ann1.96FU63 Arachis hypogaea HOM05D006948 ORTHO05D008703 7.6e-12 73.9 78 47.4
arahy.Tifrunner.gnm1.ann1.9NP6XU Arachis hypogaea HOM05D006948 ORTHO05D008703 7.6e-12 73.9 78 47.4
MSTRG.28159 Avicennia marina HOM05D006948 ORTHO05D008703 7.6e-12 73.9 84 52.4
PGR042G1623 Punica granatum HOM05D006948 ORTHO05D008703 7.6e-12 73.9 61 59.0
Glyma.01G074400 Glycine max HOM05D006948 ORTHO05D008703 1.0e-11 73.6 83 49.4
TPR.G39099 Trifolium pratense HOM05D006948 ORTHO05D008703 1.7e-11 72.8 78 50.0
Dinv43640 Davidia involucrata HOM05D006948 ORTHO05D008703 2.2e-11 72.4 67 58.2
CSS0003978 Camellia sinensis var. sinensis HOM05D006948 ORTHO05D008703 2.9e-11 72.0 55 67.3
Lalb_Chr19g0126621 Lupinus albus HOM05D006948 ORTHO05D008703 4.9e-11 71.2 73 50.7
Ca_27396_v3 Cicer arietinum L. HOM05D006948 ORTHO05D008703 6.5e-11 70.9 74 51.4
MD00G1058900 Malus domestica HOM05D006948 ORTHO05D008703 1.1e-10 70.1 70 51.4
Sc23g0003950 Simmondsia chinensis HOM05D006948 ORTHO05D008703 1.4e-10 69.7 56 62.5
Sed0014312 Sechium edule HOM05D006948 ORTHO05D008703 1.9e-10 69.3 60 56.7
SGA_v2.0_scaffold43G16525 Striga asiatica HOM05D006948 ORTHO05D008703 1.9e-10 69.3 78 50.0
Haze_24986 Corylus avellana HOM05D006948 ORTHO05D008703 2.5e-10 68.9 72 52.8
Medtr7g446140 Medicago truncatula HOM05D006948 ORTHO05D008703 2.5e-10 68.9 64 54.7
VMungo1383G1377 Vigna mungo HOM05D006948 ORTHO05D008703 2.5e-10 68.9 84 44.0
DCAR_025075 Daucus carota HOM05D006948 ORTHO05D008703 3.2e-10 68.6 59 61.0
Phvul.008G140300 Phaseolus vulgaris HOM05D006948 ORTHO05D008703 5.5e-10 67.8 84 44.0
TAR629G0288 Trochodendron aralioides HOM05D006948 ORTHO05D000005 7.1e-10 67.4 55 61.8
Actinidia12660 Actinidia chinensis HOM05D006948 ORTHO05D008703 2.7e-09 65.5 57 59.6
Migut.O00539 Erythranthe guttata HOM05D006948 ORTHO05D008703 6.0e-09 64.3 67 53.7
Eucgr.E01580 Eucalyptus grandis HOM05D006948 ORTHO05D008703 6.0e-09 64.3 66 56.1
Rhsim01G0137500 Rhododendron simsii HOM05D006948 ORTHO05D008703 1.3e-08 63.2 54 59.3
Migut.N01755 Erythranthe guttata HOM05D006948 ORTHO05D008703 3.9e-08 61.6 67 50.7
Hma1.2p1_1740F.1_g300040 Hydrangea macrophylla HOM05D006948 ORTHO05D008703 3.9e-08 61.6 51 68.6
Lj1g0016170 Lotus japonicus HOM05D006948 ORTHO05D008703 5.1e-08 61.2 66 53.0
Aqoxy7G00836 Aquilegia oxysepala HOM05D006948 ORTHO05D008703 6.7e-08 60.8 71 52.1
PSO732G0264 Papaver somniferum HOM05D006948 ORTHO05D008703 6.7e-08 60.8 78 42.3
unitig_0.g2760 Utricularia gibba HOM05D006948 ORTHO05D008703 6.7e-08 60.8 47 63.8
RcHm_v2.0_Chr1g0346581 Rosa chinensis HOM05D006948 ORTHO05D008703 8.7e-08 60.5 66 48.5
CDE11G0572 Ceratophyllum demersum HOM05D006948 ORTHO05D008703 7.4e-07 57.4 59 52.5
Os04g0549400 Oryza sativa ssp. japonica HOM05D006948 ORTHO05D008703 7.4e-07 57.4 74 43.2
Zm00001eb429840 Zea mays HOM05D006948 ORTHO05D008703 7.4e-07 57.4 67 46.3
FAN10G3172 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.3e-06 56.6 86 39.5
FAN10G3965 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.3e-06 56.6 86 39.5
Medtr7g446470 Medicago truncatula HOM05D006948 ORTHO05D008703 1.3e-06 56.6 47 61.7
FAN01G0218 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.6e-06 56.2 86 39.5
FAN03G2439 Fragaria x ananassa HOM05D006948 ORTHO05D008703 1.6e-06 56.2 86 39.5
PSO675G6563 Papaver somniferum HOM05D006948 ORTHO05D008703 2.8e-06 55.5 55 50.9
FvH4_7g09680 Fragaria vesca HOM05D006948 ORTHO05D008703 6.2e-06 54.3 86 39.5
FAN06G1163 Fragaria x ananassa HOM05D006948 ORTHO05D008703 6.2e-06 54.3 86 39.5
FAN06G4415 Fragaria x ananassa HOM05D006948 ORTHO05D008703 6.2e-06 54.3 86 39.5
Nn1g00906 Nelumbo nucifera HOM05D006948 ORTHO05D008703 6.2e-06 54.3 57 52.6


User provided reference genes

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