Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002865g0100 Nicotiana tabacum HOM05D003963 ORTHO05D004558 2.2e-221 772.7 635 100.0
Nitab4.5_0003748g0020 Nicotiana tabacum HOM05D003963 ORTHO05D004558 3.3e-209 732.3 635 97.2
PGSC0003DMG400029740 Solanum tuberosum HOM05D003963 ORTHO05D004558 6.7e-178 628.2 635 90.1
Solyc01g104910.3 Solanum lycopersicum HOM05D003963 ORTHO05D004558 2.1e-176 623.2 635 89.4
Sopen01g047420 Solanum pennellii HOM05D003963 ORTHO05D004558 2.8e-176 622.9 635 89.3
Peaxi162Scf00001g00041 Petunia axillaris HOM05D003963 ORTHO05D004558 3.1e-175 619.4 636 89.3
Peaxi162Scf00001g00043 Petunia axillaris HOM05D003963 ORTHO05D004558 3.1e-175 619.4 636 89.3
CAN.G523.95 Capsicum annuum HOM05D003963 ORTHO05D004558 1.2e-171 607.4 635 88.3
Peaxi162Scf00003g00367 Petunia axillaris HOM05D003963 ORTHO05D004558 3.2e-132 476.5 634 79.3
Dinv19323 Davidia involucrata HOM05D003963 ORTHO05D004558 9.5e-116 421.8 636 73.3
Cc02_g21840 Coffea canephora HOM05D003963 ORTHO05D004558 8.6e-109 398.7 640 73.4
Oeu037198.2 Olea europaea HOM05D003963 ORTHO05D004558 5.2e-106 389.4 622 73.5
Duzib052G0219 Durio zibethinus HOM05D003963 ORTHO05D004558 1.7e-101 374.4 632 72.2
COL.COLO4_20869 Corchorus olitorius HOM05D003963 ORTHO05D004558 2.3e-101 374.0 626 73.0
Dinv24217 Davidia involucrata HOM05D003963 ORTHO05D004558 2.5e-100 370.5 618 71.5
Thecc.02G143400 Theobroma cacao HOM05D003963 ORTHO05D004558 2.5e-100 370.5 624 72.4
MSTRG.16566 Avicennia marina HOM05D003963 ORTHO05D004558 3.6e-99 366.7 623 72.1
TWI23G1041 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 1.5e-97 361.3 624 71.2
Hma1.2p1_0217F.1_g091740 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 4.4e-97 359.8 625 71.5
Actinidia00250 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.7e-96 357.8 607 71.8
Duzib248G1667 Durio zibethinus HOM05D003963 ORTHO05D004558 2.3e-93 347.4 624 71.0
TWI59G0617 Tripterygium wilfordii HOM05D003963 ORTHO05D004558 8.6e-93 345.5 637 70.0
Gorai.013G063300 Gossypium raimondii HOM05D003963 ORTHO05D004558 3.3e-92 343.6 624 71.3
Prupe.1G559700 Prunus persica HOM05D003963 ORTHO05D004558 5.6e-92 342.8 624 70.7
vmacro01810 Vaccinium macrocarpon HOM05D003963 ORTHO05D004558 9.5e-92 342.0 621 70.2
Manes.04G062400 Manihot esculenta HOM05D003963 ORTHO05D004558 2.8e-91 340.5 629 70.3
CSS0022227 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 6.2e-91 339.3 648 68.4
RcHm_v2.0_Chr7g0225521 Rosa chinensis HOM05D003963 ORTHO05D004558 1.4e-90 338.2 635 70.2
Cpa.g.sc0.13 Carica papaya HOM05D003963 ORTHO05D004558 1.8e-90 337.8 625 69.6
QL11p019412 Quercus lobata HOM05D003963 ORTHO05D004558 1.8e-90 337.8 630 70.6
MD15G1414300 Malus domestica HOM05D003963 ORTHO05D004558 4.0e-90 336.7 624 70.2
CSS0000527 Camellia sinensis var. sinensis HOM05D003963 ORTHO05D004558 5.2e-90 336.3 648 68.2
Haze_09992 Corylus avellana HOM05D003963 ORTHO05D004558 3.4e-89 333.6 628 70.4
FvH4_5g30651 Fragaria vesca HOM05D003963 ORTHO05D004558 1.3e-88 331.6 635 69.9
Gohir.D13G056000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.7e-88 331.3 624 70.4
Cfa005579 Carpinus fangiana HOM05D003963 ORTHO05D004558 2.9e-88 330.5 626 70.8
CANSAT11G0470 Cannabis sativa HOM05D003963 ORTHO05D004558 3.7e-88 330.1 638 68.7
FAN04G2665 Fragaria x ananassa HOM05D003963 ORTHO05D004558 1.1e-87 328.6 635 70.2
MD08G1221900 Malus domestica HOM05D003963 ORTHO05D004558 4.1e-87 326.6 624 70.0
Potri.003G023300 Populus trichocarpa HOM05D003963 ORTHO05D004558 1.2e-86 325.1 624 70.5
Eucgr.I02691 Eucalyptus grandis HOM05D003963 ORTHO05D004558 2.7e-86 323.9 628 69.7
SalBow5G2159 Salvia bowleyana HOM05D003963 ORTHO05D004558 2.7e-86 323.9 622 70.7
Gohir.D02G195000 Gossypium hirsutum HOM05D003963 ORTHO05D004558 3.5e-86 323.6 622 69.9
Gorai.005G217900 Gossypium raimondii HOM05D003963 ORTHO05D004558 6.0e-86 322.8 622 69.9
Haze_10775 Corylus avellana HOM05D003963 ORTHO05D004558 7.8e-86 322.4 628 69.9
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 1.0e-85 322.0 636 69.0
Rhsim11G0134700 Rhododendron simsii HOM05D003963 ORTHO05D004558 2.3e-85 320.9 630 69.2
Potri.001G206600 Populus trichocarpa HOM05D003963 ORTHO05D004558 5.1e-85 319.7 625 69.9
Gohir.A13G065700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 1.9e-84 317.8 629 69.3
CiPaw.06G151200 Carya illinoinensis HOM05D003963 ORTHO05D004558 1.2e-83 315.1 630 68.6
Ciclev10000572m.g Citrus clementina HOM05D003963 ORTHO05D004558 1.2e-83 315.1 630 68.7
Sabra03G0014600 Salix brachista HOM05D003963 ORTHO05D004558 1.2e-81 308.5 625 69.8
Psat7g097440 Pisum sativum HOM05D003963 ORTHO05D004558 4.4e-81 306.6 631 68.9
AUR62027385 Chenopodium quinoa HOM05D003963 ORTHO05D004558 9.9e-81 305.4 624 68.8
Ca_18336_v3 Cicer arietinum L. HOM05D003963 ORTHO05D004558 2.2e-80 304.3 631 68.3
Oeu000233.2 Olea europaea HOM05D003963 ORTHO05D004558 2.9e-80 303.9 628 69.1
EL10Ac8g19340 Beta vulgaris HOM05D003963 ORTHO05D004558 3.8e-80 303.5 619 69.3
Glyma.08G074900 Glycine max HOM05D003963 ORTHO05D004558 3.8e-80 303.5 634 68.3
Peaxi162Scf00152g01123 Petunia axillaris HOM05D003963 ORTHO05D004558 3.8e-80 303.5 646 64.9
AUR62031300 Chenopodium quinoa HOM05D003963 ORTHO05D004558 1.9e-79 301.2 624 68.6
Sed0018276 Sechium edule HOM05D003963 ORTHO05D004558 5.4e-79 299.7 622 68.0
CiPaw.05G038900 Carya illinoinensis HOM05D003963 ORTHO05D004558 3.5e-78 297.0 632 68.4
SalBow6G3757 Salvia bowleyana HOM05D003963 ORTHO05D004558 3.5e-78 297.0 623 69.3
SalBow6G4534 Salvia bowleyana HOM05D003963 ORTHO05D004558 3.5e-78 297.0 623 69.3
MELO3C020350.2 Cucumis melo HOM05D003963 ORTHO05D004558 7.8e-78 295.8 624 67.5
DCAR_029216 Daucus carota HOM05D003963 ORTHO05D004558 3.0e-77 293.9 628 67.2
Glyma.05G120100 Glycine max HOM05D003963 ORTHO05D004558 3.0e-77 293.9 635 68.0
Medtr4g094290 Medicago truncatula HOM05D003963 ORTHO05D004558 5.1e-77 293.1 633 67.5
Migut.B00637 Erythranthe guttata HOM05D003963 ORTHO05D004558 8.7e-77 292.4 626 69.2
Lj4g0008212 Lotus japonicus HOM05D003963 ORTHO05D004558 1.5e-76 291.6 636 66.8
ClCG06G009720 Citrullus lanatus HOM05D003963 ORTHO05D004558 3.3e-76 290.4 625 67.5
FAN13G1550 Fragaria x ananassa HOM05D003963 ORTHO05D004558 3.3e-76 290.4 637 67.5
Gohir.A03G171700 Gossypium hirsutum HOM05D003963 ORTHO05D004558 3.3e-76 290.4 581 71.3
CsaV3_2G011200 Cucumis sativus L. HOM05D003963 ORTHO05D004558 4.3e-76 290.0 624 66.7
Actinidia38971 Actinidia chinensis HOM05D003963 ORTHO05D004558 5.6e-76 289.7 624 68.1
Ah.09g232110 Amaranthus hybridus HOM05D003963 ORTHO05D004558 2.8e-75 287.3 622 66.6
Hma1.2p1_0557F.1_g178060 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 6.2e-75 286.2 631 66.7
HanXRQChr11g0337121 Helianthus annuus HOM05D003963 ORTHO05D004558 1.4e-74 285.0 634 69.2
Sc14g0002710 Simmondsia chinensis HOM05D003963 ORTHO05D004558 4.0e-74 283.5 624 67.5
TAR381G1468 Trochodendron aralioides HOM05D003963 ORTHO05D004558 9.0e-74 282.3 633 66.2
Ah.14g085400 Amaranthus hybridus HOM05D003963 ORTHO05D004558 3.4e-73 280.4 623 67.3
VMungo0251G0315 Vigna mungo HOM05D003963 ORTHO05D004558 1.1e-71 275.4 635 67.6
Lsat_1_v5_gn_7_80140 Lactuca sativa HOM05D003963 ORTHO05D004558 4.6e-70 270.0 629 67.4
Phvul.002G206700 Phaseolus vulgaris HOM05D003963 ORTHO05D004558 7.8e-70 269.2 591 70.6
Oeu037196.1 Olea europaea HOM05D003963 ORTHO05D004558 3.3e-68 263.8 236 59.3
ECA236G3037 Erigeron canadensis HOM05D003963 ORTHO05D004558 1.3e-67 261.9 630 67.8
Sabra03G0014700 Salix brachista HOM05D003963 ORTHO05D004558 8.1e-67 259.2 620 66.3
Nn5g28887 Nelumbo nucifera HOM05D003963 ORTHO05D004558 1.1e-66 258.8 626 55.3
Nn1g05173 Nelumbo nucifera HOM05D003963 ORTHO05D004558 5.3e-66 256.5 626 62.5
Aqoxy6G00464 Aquilegia oxysepala HOM05D003963 ORTHO05D004558 1.6e-62 245.0 624 65.4
Lalb_Chr13g0291591 Lupinus albus HOM05D003963 ORTHO05D004558 1.5e-60 238.4 628 64.5
Lalb_Chr12g0208491 Lupinus albus HOM05D003963 ORTHO05D004558 9.6e-60 235.7 629 64.5
PSO541G3622 Papaver somniferum HOM05D003963 ORTHO05D004558 8.1e-59 232.6 628 63.7
Hund06704 Selenicereus undatus HOM05D003963 ORTHO05D004558 6.9e-58 229.6 625 63.7
MBI05_g46461_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 5.5e-55 219.9 629 63.9
TPR.G10467 Trifolium pratense HOM05D003963 ORTHO05D004558 1.2e-54 218.8 631 62.1
Aa31LG3G17400 Aethionema arabicum HOM05D003963 ORTHO05D004558 4.6e-54 216.9 622 63.0
Atru.chr6.908 Acer truncatum HOM05D003963 ORTHO05D004558 6.7e-53 213.0 246 51.2
PSO675G1096 Papaver somniferum HOM05D003963 ORTHO05D004558 2.5e-52 211.1 626 61.8
THA.LOC104799580 Tarenaya hassleriana HOM05D003963 ORTHO05D004558 9.6e-52 209.1 632 62.0
Aa31sc1834G20 Aethionema arabicum HOM05D003963 ORTHO05D004558 2.8e-51 207.6 615 63.1
GSVIVG01038733001 Vitis vinifera HOM05D003963 ORTHO05D004558 1.1e-50 205.7 620 43.7
Lj5C243T4 Lonicera japonica HOM05D003963 ORTHO05D004558 1.4e-50 205.3 632 62.7
Lalb_Chr07g0189461 Lupinus albus HOM05D003963 ORTHO05D004558 4.5e-49 200.3 593 63.7
Rhsim11G0135400 Rhododendron simsii HOM05D003963 ORTHO05D004558 1.3e-45 188.7 243 50.2
Atru.chr10.2101 Acer truncatum HOM05D003963 ORTHO05D004558 5.1e-45 186.8 232 49.1
AL8G41940 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 1.3e-40 172.2 640 60.3
Atru.chr10.2100 Acer truncatum HOM05D003963 ORTHO05D004558 3.8e-40 170.6 230 71.7
Aa31LG1G17380 Aethionema arabicum HOM05D003963 ORTHO05D004558 1.1e-39 169.1 627 61.9
Sp2g27620 Schrenkiella parvula HOM05D003963 ORTHO05D004558 1.9e-39 168.3 639 59.8
Carub.0008s2535 Capsella rubella HOM05D003963 ORTHO05D004558 5.5e-39 166.8 643 59.6
AT5G64550 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 1.6e-38 165.2 642 59.7
CARHR278520 Cardamine hirsuta HOM05D003963 ORTHO05D004558 1.6e-38 165.2 633 59.2
Lj9P318T69 Lonicera japonica HOM05D003963 ORTHO05D004558 1.5e-36 158.7 446 78.0
Thhalv10003819m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 1.3e-35 155.6 649 58.4
BcaC03g18430 Brassica carinata HOM05D003963 ORTHO05D004558 4.1e-34 150.6 639 59.8
C02p63440 Brassica napus HOM05D003963 ORTHO05D004558 1.0e-32 146.0 619 60.6
BolC2t12411H Brassica oleracea HOM05D003963 ORTHO05D004558 1.0e-32 146.0 619 60.6
BraA06t26067Z Brassica rapa HOM05D003963 ORTHO05D004558 1.0e-32 146.0 630 60.0
Zm00001eb244890 Zea mays HOM05D003963 ORTHO05D004558 1.3e-32 145.6 632 59.3
BolC3t18432H Brassica oleracea HOM05D003963 ORTHO05D004558 5.0e-32 143.7 638 58.6
Zm00001eb182980 Zea mays HOM05D003963 ORTHO05D004558 5.0e-32 143.7 638 59.6
C03p61710 Brassica napus HOM05D003963 ORTHO05D004558 2.5e-31 141.4 599 61.6
Sp6g33710 Schrenkiella parvula HOM05D003963 ORTHO05D004558 2.5e-31 141.4 626 58.0
BcaB07g29747 Brassica carinata HOM05D003963 ORTHO05D004558 3.6e-30 137.5 624 59.5
ATR0564G216 Amborella trichopoda HOM05D003963 ORTHO05D004558 1.0e-29 136.0 603 61.4
A06p31280 Brassica napus HOM05D003963 ORTHO05D004558 2.3e-29 134.8 637 58.9
ECA234G1426 Erigeron canadensis HOM05D003963 ORTHO05D004558 6.7e-29 133.3 630 60.2
SGA_v2.0_scaffold45G17289 Striga asiatica HOM05D003963 ORTHO05D004558 6.7e-29 133.3 239 41.8
A02p43350 Brassica napus HOM05D003963 ORTHO05D004558 8.8e-29 132.9 623 59.6
BraA02t09261Z Brassica rapa HOM05D003963 ORTHO05D004558 1.5e-28 132.1 623 59.6
AL6G20100 Arabidopsis lyrata HOM05D003963 ORTHO05D004558 5.7e-28 130.2 629 56.9
unitig_62.g23623 Utricularia gibba HOM05D003963 ORTHO05D004558 4.8e-27 127.1 241 37.3
Thhalv10013049m.g Eutrema salsugineum HOM05D003963 ORTHO05D004558 6.3e-27 126.7 626 56.7
Lsat_1_v5_gn_5_106681 Lactuca sativa HOM05D003963 ORTHO05D004558 8.2e-27 126.3 591 49.1
AT5G09670 Arabidopsis thaliana HOM05D003963 ORTHO05D004558 2.6e-25 121.3 626 56.2
Haze_09989 Corylus avellana HOM05D003963 ORTHO05D004558 1.4e-23 115.5 496 50.0
Zm00001eb423980 Zea mays HOM05D003963 ORTHO05D004558 7.2e-23 113.2 227 37.9
Hma1.2p1_0217F.1_g091700 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 1.2e-22 112.5 107 58.9
Os04g0458200 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 4.7e-22 110.5 641 56.3
Os04g0640900 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 4.8e-19 100.5 245 35.9
CARHR203720 Cardamine hirsuta HOM05D003963 ORTHO05D004558 2.4e-18 98.2 630 56.7
CDE02G0069 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 4.1e-18 97.4 624 47.9
Zm00001eb080920 Zea mays HOM05D003963 ORTHO05D004558 5.3e-18 97.1 602 58.0
Os02g0575700 Oryza sativa ssp. japonica HOM05D003963 ORTHO05D004558 7.0e-18 96.7 673 54.4
Hma1.2p1_0217F.1_g091695 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 9.1e-18 96.3 95 57.9
A02p00100 Brassica napus HOM05D003963 ORTHO05D004558 1.2e-17 95.9 602 55.6
BraA09t36518Z Brassica rapa HOM05D003963 ORTHO05D004558 1.2e-17 95.9 634 56.6
Hma1.2p1_0217F.1_g091710 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 2.6e-17 94.7 95 56.8
Hma1.2p1_0217F.1_g091720 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 4.5e-17 94.0 143 41.3
A09p08700 Brassica napus HOM05D003963 ORTHO05D004558 7.7e-17 93.2 634 56.5
HPP92_027148 Vanilla planifolia HOM05D003963 ORTHO05D004558 7.7e-17 93.2 237 35.0
Zm00001eb068980 Zea mays HOM05D003963 ORTHO05D004558 2.9e-16 91.3 220 35.0
BcaB05g21539 Brassica carinata HOM05D003963 ORTHO05D004558 3.8e-16 90.9 215 34.9
Hma1.2p1_0217F.1_g091680 Hydrangea macrophylla HOM05D003963 ORTHO05D004558 6.5e-16 90.1 86 58.1
CDE05G1767 Ceratophyllum demersum HOM05D003963 ORTHO05D004558 3.6e-14 84.3 105 48.6
Zm00001eb347870 Zea mays HOM05D003963 ORTHO05D010684 4.7e-14 84.0 219 33.3
BraA02t04995Z Brassica rapa HOM05D003963 ORTHO05D004558 2.3e-13 81.6 212 33.5
HPP92_016461 Vanilla planifolia HOM05D003963 ORTHO05D004558 2.3e-13 81.6 200 35.0
BcaB04g19973 Brassica carinata HOM05D003963 ORTHO05D004558 4.0e-13 80.9 151 39.7
Haze_09990 Corylus avellana HOM05D003963 ORTHO05D004558 6.8e-13 80.1 49 73.5
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 2.8e-11 74.7 174 33.3
HanXRQChr10g0293231 Helianthus annuus HOM05D003963 ORTHO05D004558 1.1e-10 72.8 158 36.7
BolC9t53891H Brassica oleracea HOM05D003963 ORTHO05D004558 4.5e-09 67.4 238 29.8
Pp3c7_8590 Physcomitrium patens HOM05D031910 ORTHO05D004558 5.9e-09 67.0 237 31.2
Pp3c11_24820 Physcomitrium patens HOM05D031910 ORTHO05D004558 7.7e-09 66.6 151 37.1
BcaC03g13269 Brassica carinata HOM05D003963 ORTHO05D004558 1.3e-08 65.9 601 42.8
BolC2t06362H Brassica oleracea HOM05D006324 ORTHO05D007463 1.3e-08 65.9 601 42.8
unitig_46.g18812 Utricularia gibba HOM05D003548 ORTHO05D004066 5.0e-08 63.9 222 27.5
C09p09830 Brassica napus HOM05D003963 ORTHO05D004558 8.5e-08 63.2 238 29.0
Mapoly0048s0020 Marchantia polymorpha HOM05D003963 ORTHO05D004558 1.9e-07 62.0 182 29.7
Haze_27105 Corylus avellana HOM05D003963 ORTHO05D004558 2.5e-07 61.6 68 54.4
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 2.5e-07 61.6 143 30.8
BcaC04g23312 Brassica carinata HOM05D003963 ORTHO05D004558 3.2e-07 61.2 202 30.7
MBI05_g29099_MAGBIO Magnolia biondii HOM05D003963 ORTHO05D004558 1.2e-06 59.3 111 36.9
Os06g0523100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 2.1e-06 58.5 148 33.1
SEGI_29670 Sequoiadendron giganteum HOM05D003963 ORTHO05D004558 2.1e-06 58.5 110 40.0
CSS0019271 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 2.7e-06 58.2 107 37.4
GSVIVG01019448001 Vitis vinifera HOM05D003548 ORTHO05D004066 2.7e-06 58.2 116 37.1
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 6.1e-06 57.0 107 36.4
Sc13g0009440 Simmondsia chinensis HOM05D003548 ORTHO05D004066 8.0e-06 56.6 256 28.5
Zm00001eb238000 Zea mays HOM05D003548 ORTHO05D004066 8.0e-06 56.6 158 31.6


User provided reference genes

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