Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002859g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 9.4e-131 470.7 337 100.0
Nitab4.5_0000943g0100 Nicotiana tabacum HOM05D006755 ORTHO05D008472 4.7e-114 415.2 343 92.4
Nitab4.5_0009982g0010 Nicotiana tabacum HOM05D006755 ORTHO05D008472 1.7e-108 396.7 340 89.4
Solyc12g096140.3 Solanum lycopersicum HOM05D006755 ORTHO05D008472 3.3e-99 365.9 343 85.1
Peaxi162Scf00876g00046 Petunia axillaris HOM05D006755 ORTHO05D008472 1.2e-98 364.0 346 84.4
Sopen12g032020 Solanum pennellii HOM05D006755 ORTHO05D008472 1.2e-96 357.5 346 83.5
CAN.G947.37 Capsicum annuum HOM05D006755 ORTHO05D008472 1.7e-92 343.6 343 80.8
PGSC0003DMG400029290 Solanum tuberosum HOM05D006755 ORTHO05D008472 2.8e-90 336.3 355 79.2
Peaxi162Scf00193g00005 Petunia axillaris HOM05D006755 ORTHO05D008472 3.2e-70 269.6 349 73.6
Nitab4.5_0001968g0030 Nicotiana tabacum HOM05D006755 ORTHO05D008472 5.1e-60 235.7 337 70.3
Oeu033356.1 Olea europaea HOM05D006755 ORTHO05D008472 2.6e-48 196.8 314 70.1
Cc08_g09000 Coffea canephora HOM05D006755 ORTHO05D008472 1.1e-46 191.4 296 60.1
MSTRG.1737 Avicennia marina HOM05D006755 ORTHO05D008472 1.6e-45 187.6 279 73.8
Migut.E01827 Erythranthe guttata HOM05D006755 ORTHO05D008472 1.8e-44 184.1 323 62.5
SGA_v2.0_scaffold21G09644 Striga asiatica HOM05D006755 ORTHO05D008472 6.7e-44 182.2 280 72.9
CSS0044736 Camellia sinensis var. sinensis HOM05D006755 ORTHO05D008472 1.2e-40 171.4 221 84.2
Rhsim12G0052500 Rhododendron simsii HOM05D006755 ORTHO05D008472 1.2e-40 171.4 285 69.1
Thecc.02G149300 Theobroma cacao HOM05D006755 ORTHO05D008472 1.5e-40 171.0 283 65.0
Lj9P409T68 Lonicera japonica HOM05D006755 ORTHO05D008472 8.5e-39 165.2 308 65.3
CANSAT25G1067 Cannabis sativa HOM05D006755 ORTHO05D008472 3.2e-38 163.3 330 60.3
CANSAT25G1651 Cannabis sativa HOM05D006755 ORTHO05D008472 1.2e-37 161.4 330 60.0
Duzib052G1107 Durio zibethinus HOM05D006755 ORTHO05D008472 1.2e-37 161.4 284 64.4
PGR142G2394 Punica granatum HOM05D006755 ORTHO05D008472 2.7e-37 160.2 293 65.5
Gorai.013G065500 Gossypium raimondii HOM05D006755 ORTHO05D008472 6.1e-37 159.1 303 64.7
Gohir.A13G063800 Gossypium hirsutum HOM05D006755 ORTHO05D008472 7.9e-37 158.7 295 50.2
Hma1.2p1_0052F.1_g030470 Hydrangea macrophylla HOM05D006755 ORTHO05D008472 1.0e-36 158.3 232 75.0
Gohir.D13G058100 Gossypium hirsutum HOM05D006755 ORTHO05D008472 3.0e-36 156.8 292 65.4
Dinv41852 Davidia involucrata HOM05D006755 ORTHO05D008472 6.7e-36 155.6 304 64.8
Manes.15G113000 Manihot esculenta HOM05D006755 ORTHO05D008472 8.8e-36 155.2 302 62.3
TAR376G0479 Trochodendron aralioides HOM05D006755 ORTHO05D008472 1.5e-35 154.5 335 60.3
COL.COLO4_04807 Corchorus olitorius HOM05D006755 ORTHO05D008472 4.3e-35 152.9 281 63.7
Eucgr.I01549 Eucalyptus grandis HOM05D006755 ORTHO05D008472 7.4e-35 152.1 290 66.6
arahy.Tifrunner.gnm1.ann1.0IBU2N Arachis hypogaea HOM05D006755 ORTHO05D008472 2.8e-34 150.2 314 60.5
Glyma.11G065700 Glycine max HOM05D006755 ORTHO05D008472 2.8e-34 150.2 323 58.5
TPR.G18806 Trifolium pratense HOM05D006755 ORTHO05D008472 1.1e-33 148.3 310 60.6
arahy.Tifrunner.gnm1.ann1.HWJ5MG Arachis hypogaea HOM05D006755 ORTHO05D008472 1.4e-33 147.9 314 59.9
Ca_00389_v3 Cicer arietinum L. HOM05D006755 ORTHO05D008472 1.8e-33 147.5 232 75.9
DCAR_025005 Daucus carota HOM05D006755 ORTHO05D008472 1.8e-33 147.5 313 59.7
Nn6g31560 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.8e-33 147.5 376 54.0
Aqoxy4G02640 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 3.1e-33 146.7 254 71.3
Psat2g160920 Pisum sativum HOM05D006755 ORTHO05D008472 3.1e-33 146.7 290 65.2
VMungo1215G0649 Vigna mungo HOM05D006755 ORTHO05D008472 3.1e-33 146.7 303 61.7
Duzib132G0679 Durio zibethinus HOM05D006755 ORTHO05D008472 4.1e-33 146.4 323 56.0
Lj2g0006557 Lotus japonicus HOM05D006755 ORTHO05D008472 4.1e-33 146.4 298 60.4
Phvul.002G027800 Phaseolus vulgaris HOM05D006755 ORTHO05D008472 9.1e-33 145.2 303 61.4
HPP92_025325 Vanilla planifolia HOM05D006755 ORTHO05D008472 9.1e-33 145.2 193 86.0
CDE04G3036 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 3.4e-32 143.3 239 73.6
Prupe.8G183200 Prunus persica HOM05D006755 ORTHO05D008472 3.4e-32 143.3 317 61.8
Glyma.01G176900 Glycine max HOM05D006755 ORTHO05D008472 4.5e-32 142.9 306 57.8
Aa31LG6G16930 Aethionema arabicum HOM05D006755 ORTHO05D008472 1.7e-31 141.0 303 55.8
Ciclev10028759m.g Citrus clementina HOM05D006755 ORTHO05D008472 3.8e-31 139.8 324 59.6
EL10Ac9g21570 Beta vulgaris HOM05D006755 ORTHO05D008472 6.5e-31 139.0 254 66.9
ECA233G3571 Erigeron canadensis HOM05D006755 ORTHO05D008472 6.5e-31 139.0 321 52.3
Sp7g37600 Schrenkiella parvula HOM05D006755 ORTHO05D008472 8.5e-31 138.7 288 60.8
Aqoxy6G03058 Aquilegia oxysepala HOM05D006755 ORTHO05D008472 1.1e-30 138.3 303 60.7
Lalb_Chr09g0322551 Lupinus albus HOM05D006755 ORTHO05D008472 1.1e-30 138.3 268 64.2
HanXRQChr07g0186241 Helianthus annuus HOM05D006755 ORTHO05D008472 1.9e-30 137.5 250 62.8
Lsat_1_v5_gn_6_28960 Lactuca sativa HOM05D006755 ORTHO05D008472 2.5e-30 137.1 307 59.9
Medtr8g098445 Medicago truncatula HOM05D006755 ORTHO05D008472 4.2e-30 136.3 232 71.1
Carub.0007s0004 Capsella rubella HOM05D006755 ORTHO05D008472 5.5e-30 136.0 297 58.6
PSO541G3341 Papaver somniferum HOM05D006755 ORTHO05D008472 5.5e-30 136.0 206 54.4
QL11p057006 Quercus lobata HOM05D006755 ORTHO05D008472 5.5e-30 136.0 279 58.1
AL7G10050 Arabidopsis lyrata HOM05D006755 ORTHO05D008472 7.2e-30 135.6 305 57.4
Sc18g0006850 Simmondsia chinensis HOM05D006755 ORTHO05D008472 7.2e-30 135.6 312 60.9
Actinidia26119 Actinidia chinensis HOM05D006755 ORTHO05D008472 1.2e-29 134.8 186 81.7
CARHR293910 Cardamine hirsuta HOM05D006755 ORTHO05D008472 1.2e-29 134.8 271 63.5
vmacro08131 Vaccinium macrocarpon HOM05D006755 ORTHO05D008472 1.2e-29 134.8 184 85.9
Os01g0546500 Oryza sativa ssp. japonica HOM05D006755 ORTHO05D008472 2.7e-29 133.7 207 74.9
AUR62010217 Chenopodium quinoa HOM05D006755 ORTHO05D008472 3.6e-29 133.3 237 71.7
Lj2g0026453 Lotus japonicus HOM05D006755 ORTHO05D008472 6.1e-29 132.5 278 65.8
THA.LOC104823440 Tarenaya hassleriana HOM05D006755 ORTHO05D008472 1.0e-28 131.7 275 58.5
TWI75G0077 Tripterygium wilfordii HOM05D006755 ORTHO05D008472 1.8e-28 131.0 283 62.5
BcaC06g34295 Brassica carinata HOM05D006755 ORTHO05D008472 2.3e-28 130.6 285 61.4
CDE02G4616 Ceratophyllum demersum HOM05D006755 ORTHO05D008472 3.0e-28 130.2 290 60.3
BolC7t43606H Brassica oleracea HOM05D006755 ORTHO05D008472 1.1e-27 128.3 285 60.0
BraA06t27405Z Brassica rapa HOM05D006755 ORTHO05D008472 1.5e-27 127.9 275 61.1
Thhalv10005467m.g Eutrema salsugineum HOM05D006755 ORTHO05D008472 1.5e-27 127.9 302 58.6
CiPaw.06G113100 Carya illinoinensis HOM05D006755 ORTHO05D008472 2.6e-27 127.1 286 57.0
Medtr5g019860 Medicago truncatula HOM05D006755 ORTHO05D008472 3.3e-27 126.7 232 69.0
PSO675G0405 Papaver somniferum HOM05D006755 ORTHO05D008472 3.3e-27 126.7 206 52.4
BcaC06g31423 Brassica carinata HOM05D006755 ORTHO05D008472 4.4e-27 126.3 279 57.3
C07p30650 Brassica napus HOM05D006755 ORTHO05D008472 4.4e-27 126.3 285 59.3
MD05G1145100 Malus domestica HOM05D006755 ORTHO05D008472 4.4e-27 126.3 303 62.4
HPP92_007220 Vanilla planifolia HOM05D006755 ORTHO05D008472 7.4e-27 125.6 393 50.4
Zm00001eb342190 Zea mays HOM05D006755 ORTHO05D008472 9.7e-27 125.2 264 59.5
A06p45360 Brassica napus HOM05D006755 ORTHO05D008472 1.3e-26 124.8 276 60.1
Cfa005407 Carpinus fangiana HOM05D006755 ORTHO05D008472 1.7e-26 124.4 285 56.5
Ah.01g010520 Amaranthus hybridus HOM05D006755 ORTHO05D008472 2.8e-26 123.6 255 65.1
AUR62013213 Chenopodium quinoa HOM05D006755 ORTHO05D008472 2.8e-26 123.6 195 80.5
AT4G38150 Arabidopsis thaliana HOM05D006755 ORTHO05D008472 8.2e-26 122.1 183 49.2
Sed0010179 Sechium edule HOM05D006755 ORTHO05D008472 1.1e-25 121.7 301 60.1
SHI05798 Sapria himalayana HOM05D006755 ORTHO05D008472 5.3e-25 119.4 196 72.4
CsaV3_7G002250 Cucumis sativus L. HOM05D006755 ORTHO05D008472 3.5e-24 116.7 307 58.6
SalBow1G4250 Salvia bowleyana HOM05D006755 ORTHO05D008472 8.5e-23 112.1 261 46.4
Sabra04G0141300 Salix brachista HOM05D006755 ORTHO05D008472 1.1e-22 111.7 327 53.8
Nn3g19301 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.9e-22 110.9 96 60.4
Nn1g06229 Nelumbo nucifera HOM05D006755 ORTHO05D008472 3.2e-22 110.2 96 61.5
MELO3C024165.2 Cucumis melo HOM05D006755 ORTHO05D008472 6.1e-21 105.9 330 54.2
Actinidia20592 Actinidia chinensis HOM05D006755 ORTHO05D008472 8.0e-21 105.5 58 87.9
Haze_01948 Corylus avellana HOM05D006755 ORTHO05D008472 1.8e-20 104.4 153 47.1
MBI01_g31986_MAGBIO Magnolia biondii HOM05D006755 ORTHO05D008472 5.2e-20 102.8 209 70.3
FvH4_2g17180 Fragaria vesca HOM05D006755 ORTHO05D008472 1.1e-19 101.7 313 57.8
Potri.004G209500 Populus trichocarpa HOM05D006755 ORTHO05D008472 2.0e-19 100.9 327 50.8
RcHm_v2.0_Chr6g0281671 Rosa chinensis HOM05D006755 ORTHO05D008472 2.6e-19 100.5 148 47.3
SEGI_20822 Sequoiadendron giganteum HOM05D006755 ORTHO05D008472 4.4e-19 99.8 206 71.8
FAN15G2937 Fragaria x ananassa HOM05D006755 ORTHO05D008472 9.7e-19 98.6 304 57.2
GSVIVG01023844001 Vitis vinifera HOM05D006755 ORTHO05D008472 9.7e-19 98.6 315 29.8
Hund00104 Selenicereus undatus HOM05D006755 ORTHO05D001720 1.3e-18 98.2 120 49.2
Sed0025141 Sechium edule HOM05D006755 ORTHO05D008472 2.2e-18 97.4 112 50.0
FAN27G0618 Fragaria x ananassa HOM05D006755 ORTHO05D008472 6.3e-18 95.9 313 57.2
Ah.01g017780 Amaranthus hybridus HOM05D006755 ORTHO05D008472 7.0e-17 92.4 99 50.5
ATR0605G371 Amborella trichopoda HOM05D006755 ORTHO05D008472 7.0e-17 92.4 176 42.0
ClCG02G003160 Citrullus lanatus HOM05D006755 ORTHO05D008472 9.1e-17 92.0 317 53.6
Nn6g31556 Nelumbo nucifera HOM05D006755 ORTHO05D008472 9.1e-17 92.0 172 58.1
Lj6P318T4 Lonicera japonica HOM05D006755 ORTHO05D008472 4.4e-11 73.2 37 97.3
ATR0693G165 Amborella trichopoda HOM05D002804 ORTHO05D003755 9.8e-11 72.0 72 50.0
Nn5g27913 Nelumbo nucifera HOM05D002804 ORTHO05D003755 2.2e-10 70.9 72 50.0
TAR636G2693 Trochodendron aralioides HOM05D002804 ORTHO05D003755 3.7e-10 70.1 72 50.0
PSO170G1624 Papaver somniferum HOM05D002804 ORTHO05D003755 1.6e-08 64.7 73 49.3
PSO357G0404 Papaver somniferum HOM05D002804 ORTHO05D003755 1.6e-08 64.7 73 49.3
Cpa.g.sc14.234 Carica papaya HOM05D002804 ORTHO05D003755 2.0e-08 64.3 71 49.3
FAN05G1021 Fragaria x ananassa HOM05D002804 ORTHO05D003755 3.5e-08 63.5 68 50.0
Manes.04G038100 Manihot esculenta HOM05D002804 ORTHO05D003755 5.9e-08 62.8 62 51.6
Nn5g27110 Nelumbo nucifera HOM05D006755 ORTHO05D008472 1.3e-07 61.6 146 76.0
FvH4_6g08960 Fragaria vesca HOM05D002804 ORTHO05D003755 1.7e-07 61.2 109 36.7
FAN14G2492 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.7e-07 61.2 109 36.7
Sabra13G0000100 Salix brachista HOM05D002804 ORTHO05D003755 1.7e-07 61.2 79 43.0
Oeu053880.1 Olea europaea HOM05D043847 ORTHO05D008472 2.9e-07 60.5 46 67.4
Os06g0308200 Oryza sativa ssp. japonica HOM05D002804 ORTHO05D003755 2.9e-07 60.5 72 41.7
RcHm_v2.0_Chr3g0459231 Rosa chinensis HOM05D002804 ORTHO05D003755 3.8e-07 60.1 68 47.1
Eucgr.B01359 Eucalyptus grandis HOM05D002804 ORTHO05D003755 6.5e-07 59.3 71 45.1
MD05G1145400 Malus domestica HOM05D006755 ORTHO05D008472 6.5e-07 59.3 36 83.3
Rhsim11G0111400 Rhododendron simsii HOM05D002962 ORTHO05D003280 8.5e-07 58.9 68 45.6
AL6G13060 Arabidopsis lyrata HOM05D002804 ORTHO05D003755 7.2e-06 55.8 62 43.5
TPR.G3051 Trifolium pratense HOM05D002804 ORTHO05D003755 7.2e-06 55.8 95 37.9
Aqoxy1G02792 Aquilegia oxysepala HOM05D002804 ORTHO05D003755 9.5e-06 55.5 49 49.0
Peaxi162Scf00194g00635 Petunia axillaris HOM05D002804 ORTHO05D003755 9.5e-06 55.5 103 36.9


User provided reference genes

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