Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 6.0e-180 634.0 316 100.0
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.1e-146 523.5 305 90.2
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 9.7e-146 520.4 305 89.2
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 4.2e-125 451.8 312 78.2
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 4.4e-122 441.8 314 75.2
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 9.8e-122 440.7 312 75.0
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 4.9e-121 438.3 314 74.2
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 1.2e-119 433.7 314 74.8
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 1.1e-117 427.2 314 75.2
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 4.9e-105 385.2 308 68.5
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 6.4e-97 358.2 250 79.2
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 1.4e-91 340.5 317 60.6
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 1.3e-89 334.0 321 58.9
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 1.0e-86 324.3 316 59.2
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 1.2e-82 310.8 316 58.2
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 2.4e-80 303.1 332 54.2
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 5.4e-80 302.0 307 58.3
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 1.7e-78 297.0 311 55.0
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 1.3e-76 290.8 328 51.5
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.8e-76 289.7 318 53.1
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 4.8e-76 288.9 318 53.1
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 4.8e-76 288.9 318 53.1
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 4.8e-76 288.9 322 53.4
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 6.2e-76 288.5 333 51.7
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 2.4e-75 286.6 316 52.5
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 9.0e-75 284.6 309 55.7
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.2e-74 284.3 333 50.2
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 2.0e-74 283.5 288 54.9
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 2.6e-74 283.1 309 51.8
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 7.6e-74 281.6 320 52.5
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 1.3e-73 280.8 324 50.9
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 1.3e-73 280.8 306 54.2
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 1.7e-73 280.4 330 50.3
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 2.9e-73 279.6 311 51.8
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 4.9e-73 278.9 305 55.4
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.1e-72 277.7 316 50.9
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 1.1e-72 277.7 309 53.1
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.4e-72 277.3 312 51.6
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 2.4e-72 276.6 312 51.9
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 9.3e-72 274.6 323 51.1
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 2.1e-71 273.5 315 49.2
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 4.6e-71 272.3 320 50.6
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 4.6e-71 272.3 320 50.6
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 6.0e-71 271.9 320 50.3
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 1.0e-70 271.2 241 58.9
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 2.3e-70 270.0 313 51.8
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 2.3e-70 270.0 314 51.3
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 3.0e-70 269.6 313 51.8
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.3e-68 264.2 313 51.1
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 3.7e-68 262.7 326 49.7
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 1.1e-67 261.2 316 49.1
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 4.0e-67 259.2 320 49.1
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 4.0e-67 259.2 319 50.2
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 4.0e-67 259.2 314 49.7
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 6.9e-67 258.5 315 51.4
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 9.0e-67 258.1 309 50.5
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.2e-66 257.7 318 51.3
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 1.5e-66 257.3 326 47.5
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 1.7e-65 253.8 322 49.4
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 2.9e-65 253.1 318 49.1
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 4.9e-65 252.3 316 47.8
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 6.5e-65 251.9 317 48.6
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 8.4e-65 251.5 313 48.6
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 8.4e-65 251.5 314 48.1
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 1.1e-64 251.1 316 47.8
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 1.4e-64 250.8 318 47.2
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 1.9e-64 250.4 319 49.8
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 1.9e-64 250.4 316 47.2
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 2.5e-64 250.0 306 48.7
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 4.2e-64 249.2 254 53.5
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 7.1e-64 248.4 309 47.6
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 2.7e-63 246.5 317 47.9
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 2.7e-63 246.5 308 48.1
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 4.6e-63 245.7 304 47.0
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 4.6e-63 245.7 328 48.2
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 6.0e-63 245.4 311 46.6
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 6.0e-63 245.4 321 47.7
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 7.9e-63 245.0 316 47.2
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 1.0e-62 244.6 312 48.7
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 1.3e-62 244.2 285 50.2
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 1.3e-62 244.2 297 51.5
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 1.8e-62 243.8 305 48.9
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 1.8e-62 243.8 323 47.1
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 3.0e-62 243.0 320 47.5
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 5.1e-62 242.3 304 48.7
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 6.7e-62 241.9 318 47.2
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 6.7e-62 241.9 311 47.3
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 8.7e-62 241.5 304 47.7
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 1.1e-61 241.1 313 46.0
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 1.1e-61 241.1 307 48.2
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 1.5e-61 240.7 323 45.5
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 1.9e-61 240.4 313 48.2
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 2.5e-61 240.0 307 48.5
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 2.5e-61 240.0 306 47.4
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 2.5e-61 240.0 316 47.2
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 3.3e-61 239.6 317 46.4
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 9.6e-61 238.0 262 50.8
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 2.1e-60 236.9 224 55.4
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 2.1e-60 236.9 238 55.5
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 2.8e-60 236.5 307 49.5
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 3.7e-60 236.1 313 47.3
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 6.2e-60 235.3 313 47.6
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 6.2e-60 235.3 348 44.0
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 8.2e-60 235.0 306 45.4
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 3.1e-59 233.0 226 55.3
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 6.9e-59 231.9 310 46.5
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.2e-58 231.1 345 44.1
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 2.0e-58 230.3 329 42.6
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.0e-58 230.3 345 44.1
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 3.4e-58 229.6 308 46.1
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 4.5e-58 229.2 238 53.4
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 7.6e-58 228.4 323 44.3
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 1.3e-57 227.6 309 45.0
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 2.2e-57 226.9 305 44.6
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 2.9e-57 226.5 312 44.9
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 3.2e-56 223.0 320 44.1
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 4.2e-56 222.6 312 47.1
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 1.6e-55 220.7 310 44.5
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 2.7e-55 219.9 304 44.1
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 4.6e-55 219.2 305 43.3
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 4.6e-55 219.2 305 43.3
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 4.6e-55 219.2 303 43.2
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 4.6e-55 219.2 303 41.6
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 1.3e-54 217.6 307 45.3
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 1.8e-54 217.2 284 49.3
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 2.3e-54 216.9 226 53.5
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 2.3e-54 216.9 309 45.6
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 3.0e-54 216.5 229 51.1
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 8.7e-54 214.9 307 45.0
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 4.3e-53 212.6 313 43.1
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 9.7e-53 211.5 238 48.7
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 9.7e-53 211.5 369 39.0
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 3.7e-52 209.5 307 44.6
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.5e-50 204.1 233 50.2
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.6e-50 203.4 278 46.0
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 5.0e-49 199.1 216 53.2
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 8.5e-49 198.4 314 42.4
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 2.7e-47 193.4 323 40.6
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 7.9e-47 191.8 291 42.6
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 1.8e-46 190.7 232 48.7
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 1.1e-45 188.0 232 48.3
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 1.8e-43 180.6 311 40.8
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 5.9e-42 175.6 316 36.7
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 6.5e-41 172.2 166 54.2
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.4e-40 171.0 330 38.8
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 1.9e-40 170.6 269 39.0
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 3.3e-37 159.8 213 46.9
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 1.0e-33 148.3 171 48.5
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 5.0e-33 146.0 125 66.4
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 6.5e-33 145.6 304 36.2
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 1.4e-30 137.9 278 38.1
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 4.4e-29 132.9 117 57.3
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 8.2e-28 128.6 143 49.0
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 4.1e-27 126.3 198 45.5
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 1.7e-25 120.9 212 38.7
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 5.0e-25 119.4 150 50.7
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 4.2e-24 116.3 241 34.4
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 4.2e-24 116.3 147 45.6
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 1.6e-23 114.4 176 40.9
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 1.3e-20 104.8 110 50.0
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 5.9e-18 95.9 121 47.9
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 3.2e-16 90.1 198 35.4
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 5.5e-16 89.4 119 49.6
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.8e-14 84.3 101 52.5
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 2.6e-13 80.5 79 49.4
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 7.5e-13 79.0 104 44.2
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 7.5e-13 79.0 78 55.1
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 9.8e-13 78.6 137 41.6
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 1.7e-12 77.8 134 35.1
CBR_g51231 Chara braunii HOM05D003781 ORTHO05D004299 2.8e-12 77.0 105 44.8
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 2.8e-12 77.0 237 27.8
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 5.4e-11 72.8 51 66.7
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.2e-10 71.6 46 67.4
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 5.9e-10 69.3 149 34.9
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 5.6e-08 62.8 59 55.9
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 5.6e-08 62.8 57 57.9
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 1.2e-07 61.6 43 69.8
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 1.2e-07 61.6 244 25.0
TAR375G0299 Trochodendron aralioides HOM05D067126 ORTHO05D415426 1.8e-06 57.8 43 69.8


User provided reference genes

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