Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002858g0010 Nicotiana tabacum HOM05D007217 ORTHO05D009092 1.2e-46 189.5 96 100.0
PGSC0003DMG400021318 Solanum tuberosum HOM05D007217 ORTHO05D009092 3.5e-38 161.4 96 84.4
Sopen01g003160 Solanum pennellii HOM05D007217 ORTHO05D009092 1.7e-37 159.1 96 83.3
Peaxi162Scf00586g00008 Petunia axillaris HOM05D007217 ORTHO05D009092 9.5e-36 153.3 96 84.4
Solyc01g007180.3 Solanum lycopersicum HOM05D007217 ORTHO05D009092 9.5e-36 153.3 96 81.2
Nitab4.5_0004758g0070 Nicotiana tabacum HOM05D007217 ORTHO05D009092 3.7e-24 114.8 96 65.6
Rhsim09G0182200 Rhododendron simsii HOM05D007217 ORTHO05D009092 3.2e-23 111.7 96 58.3
Rhsim02G0191400 Rhododendron simsii HOM05D007217 ORTHO05D009092 4.1e-23 111.3 96 58.3
Oeu043290.1 Olea europaea HOM05D007217 ORTHO05D009092 7.1e-23 110.5 96 59.4
Dinv20263 Davidia involucrata HOM05D007217 ORTHO05D009092 1.1e-20 103.2 96 56.2
MSTRG.12451 Avicennia marina HOM05D007217 ORTHO05D009092 3.6e-19 98.2 96 54.2
Rhsim04G0112200 Rhododendron simsii HOM05D007217 ORTHO05D009092 1.4e-18 96.3 127 44.9
Ciclev10029535m.g Citrus clementina HOM05D007217 ORTHO05D009092 7.6e-17 90.5 91 53.8
TAR722G0002 Trochodendron aralioides HOM05D007217 ORTHO05D009092 1.3e-16 89.7 96 52.1
CsaV3_3G030060 Cucumis sativus L. HOM05D007217 ORTHO05D009092 1.7e-16 89.4 93 49.5
MELO3C015565.2 Cucumis melo HOM05D007217 ORTHO05D009092 2.2e-16 89.0 95 50.5
Ciclev10018165m.g Citrus clementina HOM05D007217 ORTHO05D009092 4.9e-16 87.8 92 51.1
MELO3C022720.2 Cucumis melo HOM05D007217 ORTHO05D009092 4.9e-16 87.8 93 49.5
QL05p062902 Quercus lobata HOM05D007217 ORTHO05D009092 6.4e-16 87.4 80 56.2
Migut.N02356 Erythranthe guttata HOM05D007217 ORTHO05D009092 8.3e-16 87.0 96 49.0
Dinv01436 Davidia involucrata HOM05D007217 ORTHO05D009092 1.4e-15 86.3 68 61.8
ClCG07G002120 Citrullus lanatus HOM05D007217 ORTHO05D009092 1.9e-15 85.9 93 49.5
Cc01_g06080 Coffea canephora HOM05D007217 ORTHO05D009092 1.9e-15 85.9 90 51.1
GSVIVG01019606001 Vitis vinifera HOM05D007217 ORTHO05D009092 1.9e-15 85.9 96 49.0
CsaV3_4G011770 Cucumis sativus L. HOM05D007217 ORTHO05D009092 4.1e-15 84.7 93 47.3
Rhsim05G0134700 Rhododendron simsii HOM05D007217 ORTHO05D009092 4.1e-15 84.7 92 50.0
Gohir.D06G146500 Gossypium hirsutum HOM05D007217 ORTHO05D009092 1.2e-14 83.2 92 51.1
Atru.chr10.619 Acer truncatum HOM05D007217 ORTHO05D009092 1.6e-14 82.8 93 53.8
RcHm_v2.0_Chr5g0019241 Rosa chinensis HOM05D007217 ORTHO05D009092 1.6e-14 82.8 92 50.0
Hma1.2p1_0074F.1_g039010 Hydrangea macrophylla HOM05D007217 ORTHO05D009092 2.1e-14 82.4 96 46.9
CiPaw.10G112300 Carya illinoinensis HOM05D007217 ORTHO05D009092 2.7e-14 82.0 94 50.0
FvH4_3g11820 Fragaria vesca HOM05D007217 ORTHO05D009092 2.7e-14 82.0 92 47.8
Gohir.A06G140100 Gossypium hirsutum HOM05D007217 ORTHO05D009092 2.7e-14 82.0 92 51.1
Cpa.g.sc64.50 Carica papaya HOM05D007217 ORTHO05D009092 4.6e-14 81.3 93 46.2
SGA_v2.0_scaffold3G01474 Striga asiatica HOM05D007217 ORTHO05D009092 4.6e-14 81.3 96 45.8
Gorai.010G170900 Gossypium raimondii HOM05D007217 ORTHO05D009092 6.0e-14 80.9 92 51.1
TWI09G0397 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 6.0e-14 80.9 93 47.3
Lalb_Chr16g0392431 Lupinus albus HOM05D007217 ORTHO05D009092 7.8e-14 80.5 89 49.4
Psat0s5329g0080 Pisum sativum HOM05D007217 ORTHO05D009092 7.8e-14 80.5 89 47.2
TWI09G0788 Tripterygium wilfordii HOM05D007217 ORTHO05D009092 7.8e-14 80.5 93 47.3
SalBow8G5173 Salvia bowleyana HOM05D007217 ORTHO05D009092 1.3e-13 79.7 96 46.9
Medtr8g011490 Medicago truncatula HOM05D007217 ORTHO05D009092 3.0e-13 78.6 89 48.3
Manes.02G204000 Manihot esculenta HOM05D007217 ORTHO05D009092 3.9e-13 78.2 93 48.4
Duzib235G1460 Durio zibethinus HOM05D007217 ORTHO05D009092 6.6e-13 77.4 92 54.3
MBI18_g37406_MAGBIO Magnolia biondii HOM05D007217 ORTHO05D009092 6.6e-13 77.4 90 45.6
unitig_749.g13716 Utricularia gibba HOM05D007217 ORTHO05D009092 6.6e-13 77.4 93 46.2
Sed0002565 Sechium edule HOM05D007217 ORTHO05D009092 1.5e-12 76.3 94 45.7
Prupe.4G105800 Prunus persica HOM05D007217 ORTHO05D009092 1.9e-12 75.9 92 46.7
Thecc.06G135800 Theobroma cacao HOM05D007217 ORTHO05D009092 1.9e-12 75.9 92 50.0
Sc06g0009730 Simmondsia chinensis HOM05D007217 ORTHO05D009092 2.5e-12 75.5 95 46.3
Nitab4.5_0000978g0250 Nicotiana tabacum HOM05D007217 ORTHO05D009092 3.3e-12 75.1 62 61.3
Actinidia38172 Actinidia chinensis HOM05D007217 ORTHO05D009092 5.6e-12 74.3 68 55.9
Lj5g0013157 Lotus japonicus HOM05D007217 ORTHO05D009092 5.6e-12 74.3 89 48.3
Eucgr.E04359 Eucalyptus grandis HOM05D007217 ORTHO05D009092 9.6e-12 73.6 80 50.0
THA.LOC104808222 Tarenaya hassleriana HOM05D007217 ORTHO05D009092 9.6e-12 73.6 95 44.2
GSVIVG01013634001 Vitis vinifera HOM05D007217 ORTHO05D009092 9.6e-12 73.6 95 46.3
VMungo1383G0797 Vigna mungo HOM05D007217 ORTHO05D009092 1.2e-11 73.2 94 43.6
Eucgr.E02022 Eucalyptus grandis HOM05D007217 ORTHO05D009092 1.6e-11 72.8 80 48.8
Lj6g0006317 Lotus japonicus HOM05D007217 ORTHO05D009092 1.6e-11 72.8 89 47.2
Nn7g37971 Nelumbo nucifera HOM05D007217 ORTHO05D009092 1.6e-11 72.8 96 43.8
DCAR_001337 Daucus carota HOM05D007217 ORTHO05D009092 2.1e-11 72.4 94 42.6
Sabra01G0058500 Salix brachista HOM05D007217 ORTHO05D009092 2.1e-11 72.4 96 46.9
Phvul.008G108200 Phaseolus vulgaris HOM05D007217 ORTHO05D009092 2.8e-11 72.0 89 42.7
Glyma.08G176100 Glycine max HOM05D007217 ORTHO05D009092 3.6e-11 71.6 89 44.9
MD05G1258900 Malus domestica HOM05D007217 ORTHO05D009092 4.7e-11 71.2 92 44.6
Potri.003G149100 Populus trichocarpa HOM05D007217 ORTHO05D009092 4.7e-11 71.2 93 46.2
arahy.Tifrunner.gnm1.ann1.TIKV1F Arachis hypogaea HOM05D007217 ORTHO05D009092 6.2e-11 70.9 89 47.2
CARHR074240 Cardamine hirsuta HOM05D007217 ORTHO05D009092 6.2e-11 70.9 94 42.6
DCAR_031675 Daucus carota HOM05D007217 ORTHO05D009092 8.1e-11 70.5 94 41.5
arahy.Tifrunner.gnm1.ann1.Z0SJI2 Arachis hypogaea HOM05D007217 ORTHO05D009092 1.1e-10 70.1 89 46.1
MD10G1238500 Malus domestica HOM05D007217 ORTHO05D009092 1.4e-10 69.7 92 43.5
arahy.Tifrunner.gnm1.ann1.3NP1QY Arachis hypogaea HOM05D007217 ORTHO05D009092 3.1e-10 68.6 89 46.1
Glyma.15G250400 Glycine max HOM05D007217 ORTHO05D009092 5.2e-10 67.8 89 42.7
EL10Ac9g22805 Beta vulgaris HOM05D007217 ORTHO05D009092 6.8e-10 67.4 92 45.7
AL2G41250 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 8.9e-10 67.0 94 41.5
Lsat_1_v5_gn_4_36120 Lactuca sativa HOM05D007217 ORTHO05D009092 1.2e-09 66.6 96 41.7
Potri.001G081300 Populus trichocarpa HOM05D007217 ORTHO05D009092 3.4e-09 65.1 96 42.7
Lsat_1_v5_gn_7_8820 Lactuca sativa HOM05D007217 ORTHO05D009092 4.4e-09 64.7 97 41.2
AT1G80245 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 5.8e-09 64.3 94 40.4
BcaC03g15989 Brassica carinata HOM05D007217 ORTHO05D009092 9.9e-09 63.5 92 42.4
Carub.0007s3329 Capsella rubella HOM05D007217 ORTHO05D009092 1.3e-08 63.2 93 39.8
HanXRQChr04g0107331 Helianthus annuus HOM05D007217 ORTHO05D009092 1.7e-08 62.8 85 41.2
C02p37450 Brassica napus HOM05D004952 ORTHO05D006131 2.9e-08 62.0 91 41.8
BolC2t09757H Brassica oleracea HOM05D004952 ORTHO05D006131 2.9e-08 62.0 93 40.9
Gohir.D10G048000 Gossypium hirsutum HOM05D007217 ORTHO05D009092 4.9e-08 61.2 96 43.8
Gorai.011G051100 Gossypium raimondii HOM05D007217 ORTHO05D009092 4.9e-08 61.2 96 43.8
Sp5g35560 Schrenkiella parvula HOM05D007217 ORTHO05D009092 4.9e-08 61.2 93 40.9
Aa31LG4G550 Aethionema arabicum HOM05D002649 ORTHO05D002838 1.4e-07 59.7 94 39.4
BcaB05g25284 Brassica carinata HOM05D004952 ORTHO05D006131 1.4e-07 59.7 93 38.7
BraA02t07362Z Brassica rapa HOM05D004952 ORTHO05D006131 4.2e-07 58.2 92 40.2
Gohir.A10G046700 Gossypium hirsutum HOM05D007217 ORTHO05D009092 4.2e-07 58.2 60 56.7
AL7G47090 Arabidopsis lyrata HOM05D007217 ORTHO05D009092 7.1e-07 57.4 95 38.9
Psat4g125640 Pisum sativum HOM05D007217 ORTHO05D009092 9.3e-07 57.0 89 38.2
Sp1g21760 Schrenkiella parvula HOM05D007217 ORTHO05D009092 9.3e-07 57.0 98 40.8
AT4G00695 Arabidopsis thaliana HOM05D007217 ORTHO05D009092 1.2e-06 56.6 90 40.0
A02p23690 Brassica napus HOM05D004952 ORTHO05D006131 1.2e-06 56.6 91 39.6
CDE03G0339 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 1.6e-06 56.2 97 39.2
CDE03G0351 Ceratophyllum demersum HOM05D007217 ORTHO05D009092 2.7e-06 55.5 97 39.2
HPP92_002517 Vanilla planifolia HOM05D007217 ORTHO05D009092 3.5e-06 55.1 72 40.3
HPP92_002534 Vanilla planifolia HOM05D007217 ORTHO05D009092 3.5e-06 55.1 72 40.3


User provided reference genes

Program Settings