Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 2.0e-295 1018.5 563 100.0
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.1e-288 996.1 563 96.4
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 3.0e-254 881.7 561 84.0
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 5.8e-250 867.5 571 85.3
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 9.9e-250 866.7 571 85.3
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 9.9e-250 866.7 571 85.3
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 6.4e-249 864.0 565 81.8
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 4.0e-211 738.4 567 68.8
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 2.6e-210 735.7 561 68.4
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 3.9e-206 721.8 563 68.2
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 9.0e-203 710.7 565 67.3
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 1.0e-201 707.2 561 68.6
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 1.7e-201 706.4 559 67.1
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 2.1e-199 699.5 565 67.8
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 1.4e-198 696.8 560 68.2
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 1.8e-198 696.4 563 66.1
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 2.5e-197 692.6 551 69.1
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 3.3e-197 692.2 550 66.2
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 3.3e-197 692.2 563 67.5
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 7.4e-197 691.0 560 65.9
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 1.4e-195 686.8 566 64.8
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 7.7e-194 681.0 561 64.7
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 1.3e-193 680.2 561 64.7
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 6.5e-193 677.9 555 65.2
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 1.1e-192 677.2 563 65.0
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 3.6e-191 672.2 565 62.8
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 6.1e-191 671.4 561 63.8
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 1.0e-190 670.6 555 64.5
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 1.0e-190 670.6 662 57.3
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 3.3e-189 665.6 561 64.0
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 3.3e-189 665.6 559 64.4
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 7.4e-189 664.5 554 66.6
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 1.4e-187 660.2 580 64.0
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 1.8e-187 659.8 575 62.8
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 7.0e-187 657.9 564 62.4
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 1.2e-186 657.1 564 62.4
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 2.6e-186 656.0 559 63.3
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 3.5e-186 655.6 558 62.9
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 4.5e-186 655.2 549 62.8
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 3.8e-185 652.1 560 62.3
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 2.5e-184 649.4 554 62.6
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.8e-182 643.3 575 61.6
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.9e-182 642.1 559 62.6
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 1.5e-181 640.2 570 61.4
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.0e-181 639.8 575 61.2
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 2.6e-181 639.4 556 62.6
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 7.4e-181 637.9 569 61.0
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 1.7e-180 636.7 575 60.9
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 2.2e-180 636.3 566 61.1
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 3.7e-180 635.6 575 60.9
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 4.1e-179 632.1 569 60.6
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 1.2e-178 630.6 554 61.4
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 2.6e-178 629.4 551 61.3
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 5.9e-178 628.2 551 62.8
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 2.9e-177 625.9 552 63.2
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 3.8e-177 625.5 570 60.5
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 4.2e-176 622.1 555 61.1
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 1.2e-175 620.5 581 58.9
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 1.8e-174 616.7 563 59.7
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 2.3e-174 616.3 556 59.9
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 6.8e-174 614.8 549 60.7
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 4.4e-173 612.1 553 60.2
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 2.2e-172 609.8 582 58.2
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 2.8e-172 609.4 571 57.8
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 8.3e-172 607.8 555 61.3
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 8.3e-172 607.8 566 59.0
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.8e-171 606.7 561 58.8
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 3.1e-171 605.9 560 58.9
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 9.1e-171 604.4 551 63.3
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 2.7e-170 602.8 566 59.2
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 4.5e-170 602.1 572 58.4
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 7.7e-170 601.3 553 60.4
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 1.5e-168 597.0 559 59.6
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 2.5e-168 596.3 567 58.9
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 7.2e-168 594.7 559 61.0
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.7e-167 592.8 559 61.0
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 4.0e-166 589.0 561 57.0
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 6.8e-166 588.2 561 57.6
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 9.8e-165 584.3 550 59.1
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 3.7e-164 582.4 586 58.7
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 1.1e-163 580.9 586 58.4
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 1.4e-163 580.5 568 58.1
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 2.7e-162 576.2 553 57.0
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 4.5e-162 575.5 552 56.0
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 1.2e-154 550.8 577 53.4
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 1.6e-154 550.4 418 71.5
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 1.6e-154 550.4 558 53.2
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 4.5e-154 548.9 563 53.3
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 7.8e-154 548.1 579 53.0
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 6.6e-153 545.0 572 54.4
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 5.6e-152 542.0 573 52.0
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 7.3e-152 541.6 559 55.1
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 4.0e-150 535.8 564 52.8
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 5.2e-150 535.4 552 52.5
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 6.8e-150 535.0 552 52.5
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 2.2e-148 530.0 563 52.8
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 2.9e-148 529.6 547 53.4
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 4.9e-148 528.9 576 50.9
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 7.0e-147 525.0 456 58.8
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 1.6e-146 523.9 552 52.2
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.7e-140 503.8 445 60.7
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 2.7e-138 496.5 574 52.3
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 2.9e-132 476.5 432 60.9
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 3.7e-132 476.1 557 50.3
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.0e-129 466.5 525 52.2
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 5.1e-129 465.7 567 49.0
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 4.3e-128 462.6 373 66.5
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.6e-127 460.7 497 57.7
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 1.1e-126 458.0 551 47.0
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 5.8e-125 452.2 578 47.2
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 2.2e-124 450.3 440 57.5
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 5.3e-118 429.1 309 71.2
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 1.9e-115 420.6 553 43.4
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 2.7e-114 416.8 281 75.4
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 4.0e-110 402.9 553 42.7
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 3.9e-105 386.3 558 41.4
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 4.3e-104 382.9 554 43.3
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 3.4e-93 346.7 379 49.1
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 1.1e-86 325.1 460 46.7
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.2e-82 311.6 305 55.7
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 2.5e-80 303.9 346 52.9
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 3.7e-79 300.1 462 43.1
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 6.9e-78 295.8 158 99.4
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 6.1e-74 282.7 495 41.0
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 2.9e-68 263.8 225 63.1
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 6.7e-65 252.7 174 69.5
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.3e-62 243.0 215 62.8
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 7.7e-61 239.2 489 37.6
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 7.2e-59 232.6 418 37.1
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 5.0e-44 183.3 149 65.1
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 2.5e-43 181.0 139 67.6
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 7.2e-43 179.5 329 38.6
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 1.6e-42 178.3 138 65.9
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 2.4e-38 164.5 145 55.9
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 2.4e-38 164.5 118 70.3
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 2.7e-37 161.0 118 68.6
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 2.4e-30 137.9 472 30.1
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-23 114.8 184 41.3
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 2.2e-23 114.8 88 68.2
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 1.9e-22 111.7 86 67.4
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.9e-19 101.7 100 50.0
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 2.5e-19 101.3 282 30.9
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 3.4e-16 90.9 74 60.8
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 1.7e-15 88.6 56 71.4
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 4.7e-10 70.5 48 70.8
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 1.5e-08 65.5 43 69.8
HanXRQChr01g0025721 Helianthus annuus HOM05D004469 ORTHO05D005429 2.6e-08 64.7 56 60.7
RcHm_v2.0_Chr5g0029761 Rosa chinensis HOM05D004469 ORTHO05D005429 7.6e-08 63.2 36 77.8
Prupe.8G069200 Prunus persica HOM05D004469 ORTHO05D005429 1.3e-07 62.4 67 53.7
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 1.3e-07 62.4 157 35.0
RcHm_v2.0_Chr7g0241351 Rosa chinensis HOM05D004469 ORTHO05D005429 2.2e-07 61.6 39 74.4
vmacro11088 Vaccinium macrocarpon HOM05D004469 ORTHO05D426737 2.2e-07 61.6 44 61.4
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 2.9e-07 61.2 52 61.5
Os04g0644300 Oryza sativa ssp. japonica HOM05D004469 ORTHO05D005429 4.9e-07 60.5 182 39.6
Thecc.08G193600 Theobroma cacao HOM05D004469 ORTHO05D005429 6.4e-07 60.1 50 60.0
Eucgr.E04269 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.4e-06 58.9 46 63.0
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 3.2e-06 57.8 162 36.4


User provided reference genes

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