Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002840g0160 Nicotiana tabacum HOM05D004868 ORTHO05D006030 4.0e-174 614.8 330 100.0
Nitab4.5_0002361g0200 Nicotiana tabacum HOM05D004868 ORTHO05D006030 3.3e-173 611.7 330 99.4
Solyc01g098040.3 Solanum lycopersicum HOM05D004868 ORTHO05D006030 2.3e-153 545.8 330 89.7
Sopen01g041620 Solanum pennellii HOM05D004868 ORTHO05D006030 2.9e-153 545.4 330 89.7
Peaxi162Scf00225g00143 Petunia axillaris HOM05D004868 ORTHO05D006030 6.6e-153 544.3 320 84.4
PGSC0003DMG400022466 Solanum tuberosum HOM05D004868 ORTHO05D006030 1.1e-152 543.5 330 89.1
CAN.G134.187 Capsicum annuum HOM05D004868 ORTHO05D006030 6.1e-151 537.7 349 84.0
SalBow2G0736 Salvia bowleyana HOM05D004868 ORTHO05D006030 3.6e-143 511.9 330 76.4
Hma1.2p1_0332F.1_g127880 Hydrangea macrophylla HOM05D004868 ORTHO05D006030 8.0e-143 510.8 335 79.1
Ah.06g192760 Amaranthus hybridus HOM05D004868 ORTHO05D006030 2.9e-140 502.3 265 87.9
Ah.04g160130 Amaranthus hybridus HOM05D004868 ORTHO05D006030 8.3e-140 500.7 265 87.2
CANSAT54G1013 Cannabis sativa HOM05D004868 ORTHO05D006030 1.4e-139 500.0 276 83.7
QL03p000506 Quercus lobata HOM05D004868 ORTHO05D006030 5.4e-139 498.0 342 73.1
Oeu012475.1 Olea europaea HOM05D004868 ORTHO05D006030 7.0e-139 497.7 332 81.0
AUR62005015 Chenopodium quinoa HOM05D004868 ORTHO05D006030 1.2e-138 496.9 339 73.7
Atru.chr2.656 Acer truncatum HOM05D004868 ORTHO05D006030 3.5e-138 495.4 277 84.1
QL03p000170 Quercus lobata HOM05D004868 ORTHO05D006030 3.5e-138 495.4 339 73.5
Cc02_g31280 Coffea canephora HOM05D004868 ORTHO05D006030 4.6e-138 495.0 327 78.0
Haze_04309 Corylus avellana HOM05D004868 ORTHO05D006030 6.0e-138 494.6 269 84.8
Potri.005G046300 Populus trichocarpa HOM05D004868 ORTHO05D006030 1.3e-137 493.4 326 73.3
CSS0010529 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.0e-137 492.3 265 86.8
DCAR_022833 Daucus carota HOM05D004868 ORTHO05D006030 3.0e-137 492.3 269 84.4
MD04G1217100 Malus domestica HOM05D004868 ORTHO05D006030 3.0e-137 492.3 328 72.9
arahy.Tifrunner.gnm1.ann1.WET4Y7 Arachis hypogaea HOM05D004868 ORTHO05D006030 3.9e-137 491.9 337 73.9
Lalb_Chr12g0208121 Lupinus albus HOM05D004868 ORTHO05D006030 3.9e-137 491.9 328 74.1
Manes.09G157900 Manihot esculenta HOM05D004868 ORTHO05D006030 5.1e-137 491.5 335 72.8
Gohir.A11G257000 Gossypium hirsutum HOM05D004868 ORTHO05D006030 6.6e-137 491.1 333 80.5
Potri.013G034000 Populus trichocarpa HOM05D004868 ORTHO05D006030 8.6e-137 490.7 326 73.6
TPR.G7590 Trifolium pratense HOM05D004868 ORTHO05D006030 8.6e-137 490.7 323 78.6
CSS0039857 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.1e-136 490.3 275 83.6
Rhsim05G0148800 Rhododendron simsii HOM05D004868 ORTHO05D006030 1.1e-136 490.3 266 86.1
Lalb_Chr13g0291821 Lupinus albus HOM05D004868 ORTHO05D006030 1.5e-136 490.0 335 73.7
Actinidia33836 Actinidia chinensis HOM05D004868 ORTHO05D006030 1.9e-136 489.6 263 85.9
arahy.Tifrunner.gnm1.ann1.VSGL27 Arachis hypogaea HOM05D004868 ORTHO05D006030 1.9e-136 489.6 344 74.1
CSS0028974 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 1.9e-136 489.6 275 84.0
Ciclev10001724m.g Citrus clementina HOM05D004868 ORTHO05D006030 2.5e-136 489.2 345 72.2
Duzib177G0825 Durio zibethinus HOM05D004868 ORTHO05D006030 2.5e-136 489.2 333 76.9
CSS0000773 Camellia sinensis var. sinensis HOM05D004868 ORTHO05D006030 3.3e-136 488.8 265 86.4
EL10Ac4g09208 Beta vulgaris HOM05D004868 ORTHO05D006030 4.3e-136 488.4 265 84.9
Sed0014615 Sechium edule HOM05D004868 ORTHO05D006030 4.3e-136 488.4 329 72.9
Cfa006482 Carpinus fangiana HOM05D004868 ORTHO05D006030 5.6e-136 488.0 269 84.0
Phvul.010G080900 Phaseolus vulgaris HOM05D004868 ORTHO05D006030 7.3e-136 487.6 346 70.8
PGR004G1913 Punica granatum HOM05D004868 ORTHO05D006030 9.5e-136 487.3 330 72.1
CiPaw.07G009000 Carya illinoinensis HOM05D004868 ORTHO05D006030 1.6e-135 486.5 326 73.6
Gorai.007G286600 Gossypium raimondii HOM05D004868 ORTHO05D006030 1.6e-135 486.5 333 72.4
MSTRG.13789 Avicennia marina HOM05D004868 ORTHO05D006030 2.1e-135 486.1 330 73.3
Gohir.D11G266800 Gossypium hirsutum HOM05D004868 ORTHO05D006030 2.1e-135 486.1 333 72.4
Sabra05G0042300 Salix brachista HOM05D004868 ORTHO05D006030 2.1e-135 486.1 326 72.1
Lsat_1_v5_gn_9_40320 Lactuca sativa HOM05D004868 ORTHO05D006030 2.8e-135 485.7 273 82.8
FAN09G4706 Fragaria x ananassa HOM05D004868 ORTHO05D006030 4.7e-135 485.0 330 71.8
Medtr4g025410 Medicago truncatula HOM05D004868 ORTHO05D006030 4.7e-135 485.0 321 76.9
C03p41370 Brassica napus HOM05D004868 ORTHO05D006030 6.2e-135 484.6 334 72.5
FAN05G2179 Fragaria x ananassa HOM05D004868 ORTHO05D006030 6.2e-135 484.6 329 71.7
FAN05G5662 Fragaria x ananassa HOM05D004868 ORTHO05D006030 6.2e-135 484.6 329 71.7
Migut.B00327 Erythranthe guttata HOM05D004868 ORTHO05D006030 8.1e-135 484.2 324 79.0
FAN02G0279 Fragaria x ananassa HOM05D004868 ORTHO05D006030 8.1e-135 484.2 333 71.2
FAN14G3773 Fragaria x ananassa HOM05D004868 ORTHO05D006030 1.1e-134 483.8 333 72.7
BolC3t16420H Brassica oleracea HOM05D004868 ORTHO05D006030 1.4e-134 483.4 334 72.2
Ca_13816_v3 Cicer arietinum L. HOM05D004868 ORTHO05D006030 1.8e-134 483.0 321 77.3
FvH4_6g03940 Fragaria vesca HOM05D004868 ORTHO05D006030 1.8e-134 483.0 333 73.3
MD12G1234100 Malus domestica HOM05D004868 ORTHO05D006030 1.8e-134 483.0 337 70.0
A03p33990 Brassica napus HOM05D004868 ORTHO05D006030 2.3e-134 482.6 333 72.4
TWI12G1223 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 2.3e-134 482.6 332 72.0
Hund07000 Selenicereus undatus HOM05D004868 ORTHO05D006030 3.1e-134 482.3 302 77.5
TPR.G39359 Trifolium pratense HOM05D004868 ORTHO05D006030 4.0e-134 481.9 271 83.4
BcaC01g04334 Brassica carinata HOM05D004868 ORTHO05D006030 1.2e-133 480.3 334 71.6
BraA06t26695Z Brassica rapa HOM05D004868 ORTHO05D006030 1.5e-133 479.9 335 71.3
COL.COLO4_13636 Corchorus olitorius HOM05D004868 ORTHO05D006030 1.5e-133 479.9 331 71.6
Prupe.6G337200 Prunus persica HOM05D004868 ORTHO05D006030 2.0e-133 479.6 268 82.8
Sp3g03920 Schrenkiella parvula HOM05D004868 ORTHO05D006030 2.0e-133 479.6 338 71.3
Thhalv10004543m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 3.4e-133 478.8 335 70.4
SGA_v2.0_scaffold146G36132 Striga asiatica HOM05D004868 ORTHO05D006030 3.4e-133 478.8 331 72.8
TWI36G0026 Tripterygium wilfordii HOM05D004868 ORTHO05D006030 5.8e-133 478.0 335 71.9
Thhalv10021106m.g Eutrema salsugineum HOM05D004868 ORTHO05D006030 7.5e-133 477.6 337 70.9
AL3G15480 Arabidopsis lyrata HOM05D004868 ORTHO05D006030 9.9e-133 477.2 324 71.3
BcaNung04260 Brassica carinata HOM05D004868 ORTHO05D006030 9.9e-133 477.2 336 70.5
BraA03t12574Z Brassica rapa HOM05D004868 ORTHO05D006030 9.9e-133 477.2 333 71.8
Lj3g0018370 Lotus japonicus HOM05D004868 ORTHO05D006030 9.9e-133 477.2 331 70.4
HanXRQChr05g0161431 Helianthus annuus HOM05D004868 ORTHO05D006030 1.3e-132 476.9 266 83.5
ECA246G2619 Erigeron canadensis HOM05D004868 ORTHO05D006030 1.7e-132 476.5 324 70.7
Glyma.01G139000 Glycine max HOM05D004868 ORTHO05D006030 2.2e-132 476.1 257 86.0
AT3G05100 Arabidopsis thaliana HOM05D004868 ORTHO05D006030 2.9e-132 475.7 337 69.1
MELO3C010076.2 Cucumis melo HOM05D004868 ORTHO05D006030 3.7e-132 475.3 328 72.0
CiPaw.08G177900 Carya illinoinensis HOM05D004868 ORTHO05D006030 4.9e-132 474.9 263 85.2
C07p40470 Brassica napus HOM05D004868 ORTHO05D006030 6.4e-132 474.6 336 70.2
BolC7t44582H Brassica oleracea HOM05D004868 ORTHO05D006030 6.4e-132 474.6 336 70.2
ClCG03G010920 Citrullus lanatus HOM05D004868 ORTHO05D006030 6.4e-132 474.6 328 71.3
Thecc.05G291500 Theobroma cacao HOM05D004868 ORTHO05D006030 6.4e-132 474.6 337 77.2
Aa31LG5G15350 Aethionema arabicum HOM05D004868 ORTHO05D006030 8.3e-132 474.2 335 69.9
Carub.0003s0434 Capsella rubella HOM05D004868 ORTHO05D006030 1.4e-131 473.4 323 71.2
MSTRG.12666 Avicennia marina HOM05D004868 ORTHO05D006030 1.9e-131 473.0 265 83.4
Eucgr.H04401 Eucalyptus grandis HOM05D004868 ORTHO05D006030 1.9e-131 473.0 319 79.6
RcHm_v2.0_Chr3g0452511 Rosa chinensis HOM05D004868 ORTHO05D006030 1.9e-131 473.0 275 79.6
Aa31LG11G8840 Aethionema arabicum HOM05D004868 ORTHO05D006030 2.4e-131 472.6 322 70.2
CsaV3_1G044760 Cucumis sativus L. HOM05D004868 ORTHO05D006030 4.1e-131 471.9 328 70.7
HanXRQChr14g0447091 Helianthus annuus HOM05D004868 ORTHO05D006030 4.1e-131 471.9 266 83.1
BcaB04g21374 Brassica carinata HOM05D004868 ORTHO05D006030 5.4e-131 471.5 329 72.6
BcaNung04261 Brassica carinata HOM05D004868 ORTHO05D006030 5.4e-131 471.5 334 69.8
CARHR185710 Cardamine hirsuta HOM05D004868 ORTHO05D006030 5.4e-131 471.5 340 68.2
Sp2g20350 Schrenkiella parvula HOM05D004868 ORTHO05D006030 7.1e-131 471.1 276 79.3
TAR636G1948 Trochodendron aralioides HOM05D004868 ORTHO05D006030 9.2e-131 470.7 327 70.9
Glyma.03G028300 Glycine max HOM05D004868 ORTHO05D006030 1.6e-130 469.9 348 74.1
Carub.0006s2543 Capsella rubella HOM05D004868 ORTHO05D006030 1.0e-129 467.2 325 70.5
A05p42480 Brassica napus HOM05D004868 ORTHO05D006030 3.0e-129 465.7 334 69.8
BraA05t23004Z Brassica rapa HOM05D004868 ORTHO05D006030 3.0e-129 465.7 334 69.8
BolC5t34872H Brassica oleracea HOM05D004868 ORTHO05D006030 6.6e-129 464.5 321 70.7
C05p62140 Brassica napus HOM05D004868 ORTHO05D006030 8.6e-129 464.2 264 81.4
VMungo0331G1201 Vigna mungo HOM05D004868 ORTHO05D006030 8.6e-129 464.2 332 69.9
Sed0017257 Sechium edule HOM05D004868 ORTHO05D006030 1.1e-128 463.8 326 69.9
Lj9A672G84 Lonicera japonica HOM05D004868 ORTHO05D006030 1.5e-128 463.4 242 87.2
Aqoxy5G00612 Aquilegia oxysepala HOM05D004868 ORTHO05D006030 5.6e-128 461.5 274 79.9
GSVIVG01021894001 Vitis vinifera HOM05D004868 ORTHO05D006030 1.6e-127 459.9 242 88.4
PSO170G6220 Papaver somniferum HOM05D004868 ORTHO05D006030 3.8e-124 448.7 325 68.0
PSO210G5882 Papaver somniferum HOM05D004868 ORTHO05D006030 8.4e-124 447.6 325 67.7
AUR62000953 Chenopodium quinoa HOM05D004868 ORTHO05D006030 1.4e-123 446.8 233 88.8
unitig_8.g3689 Utricularia gibba HOM05D004868 ORTHO05D006030 2.3e-121 439.5 324 63.9
MBI18_g14729_MAGBIO Magnolia biondii HOM05D004868 ORTHO05D006030 1.5e-120 436.8 271 76.4
Zm00001eb110980 Zea mays HOM05D004868 ORTHO05D006030 4.0e-118 428.7 270 75.2
Os07g0667400 Oryza sativa ssp. japonica HOM05D004868 ORTHO05D006030 6.9e-118 427.9 268 75.4
ATR0618G246 Amborella trichopoda HOM05D004868 ORTHO05D006030 2.0e-117 426.4 260 77.7
Dinv02605 Davidia involucrata HOM05D004868 ORTHO05D006030 2.6e-117 426.0 221 88.7
Sabra13G0033200 Salix brachista HOM05D004868 ORTHO05D006030 3.4e-117 425.6 261 80.5
Psat7g231080 Pisum sativum HOM05D004868 ORTHO05D006030 3.2e-115 419.1 215 88.4
Nn4g26018 Nelumbo nucifera HOM05D004868 ORTHO05D006030 4.6e-114 415.2 221 86.4
Lj7C479T1 Lonicera japonica HOM05D004868 ORTHO05D006030 6.0e-114 414.8 217 85.7
Cpa.g.sc117.39 Carica papaya HOM05D004868 ORTHO05D006030 7.3e-112 407.9 214 87.9
vmacro05392 Vaccinium macrocarpon HOM05D004868 ORTHO05D006030 1.3e-111 407.1 220 85.5
Dinv02602 Davidia involucrata HOM05D004868 ORTHO05D006030 1.1e-110 404.1 208 89.9
HPP92_016882 Vanilla planifolia HOM05D004868 ORTHO05D006030 3.8e-108 395.6 281 68.0
HPP92_011336 Vanilla planifolia HOM05D004868 ORTHO05D006030 4.2e-107 392.1 267 69.7
SEGI_16580 Sequoiadendron giganteum HOM05D004868 ORTHO05D006030 7.9e-106 387.9 265 70.2
Oeu027042.1 Olea europaea HOM05D004868 ORTHO05D006030 1.3e-103 380.6 298 72.5
SHI18309 Sapria himalayana HOM05D004868 ORTHO05D006030 1.4e-99 367.1 215 76.7
SMO203G0024 Selaginella moellendorffii HOM05D004868 ORTHO05D006030 5.7e-96 355.1 268 61.6
AagrBONN_evm.TU.Sc2ySwM_344.3690 Anthoceros agrestis HOM05D004868 ORTHO05D006030 7.6e-93 344.7 272 62.5
Pp3c9_1110 Physcomitrium patens HOM05D004868 ORTHO05D006030 7.2e-83 311.6 275 56.0
Dinv17742 Davidia involucrata HOM05D004868 ORTHO05D006030 2.7e-82 309.7 162 86.4
TAR365G1069 Trochodendron aralioides HOM05D004868 ORTHO05D006030 1.2e-77 294.3 227 66.1
Cpa.g.c47757 Carica papaya HOM05D004868 ORTHO05D006030 5.9e-77 292.0 152 87.5
BcaC05g29994 Brassica carinata HOM05D004868 ORTHO05D006030 3.9e-73 279.3 218 64.2
CDE08G0242 Ceratophyllum demersum HOM05D004868 ORTHO05D006030 7.4e-72 275.0 176 74.4
CARHR079420 Cardamine hirsuta HOM05D004868 ORTHO05D006030 1.2e-69 267.7 215 65.1
A06p37760 Brassica napus HOM05D004868 ORTHO05D006030 1.5e-69 267.3 212 66.0
Sc09g0003690 Simmondsia chinensis HOM05D004868 ORTHO05D006030 2.0e-69 266.9 149 81.2
Nn3g21303 Nelumbo nucifera HOM05D004868 ORTHO05D006030 4.4e-64 249.2 214 66.8
CDE02G4194 Ceratophyllum demersum HOM05D001090 ORTHO05D002687 1.4e-57 227.6 126 82.5
HPP92_028573 Vanilla planifolia HOM05D004868 ORTHO05D006030 7.7e-53 211.8 147 67.3
BcaB04g19280 Brassica carinata HOM05D004868 ORTHO05D006030 2.0e-40 170.6 147 61.9
Lsat_1_v5_gn_5_121600 Lactuca sativa HOM05D004868 ORTHO05D027635 3.0e-20 103.6 89 60.7
BcaNung04262 Brassica carinata HOM05D004868 ORTHO05D027635 4.9e-15 86.3 116 48.3
Lj7C479T9 Lonicera japonica HOM05D004868 ORTHO05D027635 5.4e-14 82.8 112 48.2
BolC1t05715H Brassica oleracea HOM05D004868 ORTHO05D006030 2.1e-13 80.9 49 71.4
SHI18307 Sapria himalayana HOM05D004868 ORTHO05D027635 8.6e-12 75.5 48 72.9


User provided reference genes

Program Settings