Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002840g0080 Nicotiana tabacum HOM05D004245 ORTHO05D004783 8.7e-38 159.8 82 100.0
Peaxi162Scf00225g00127 Petunia axillaris HOM05D004245 ORTHO05D004783 3.8e-25 117.9 81 74.1
Nitab4.5_0002361g0180 Nicotiana tabacum HOM05D004245 ORTHO05D004783 4.9e-25 117.5 66 90.9
Sopen01g041550 Solanum pennellii HOM05D004245 ORTHO05D004783 4.2e-24 114.4 79 81.0
PGSC0003DMG400022502 Solanum tuberosum HOM05D004245 ORTHO05D004783 4.2e-24 114.4 79 81.0
Solyc01g097970.4 Solanum lycopersicum HOM05D004245 ORTHO05D004783 2.1e-23 112.1 79 79.7
RcHm_v2.0_Chr6g0300871 Rosa chinensis HOM05D004245 ORTHO05D004783 1.5e-21 105.9 68 79.4
CAN.G134.178 Capsicum annuum HOM05D004245 ORTHO05D004783 3.3e-21 104.8 80 76.2
Prupe.1G380600 Prunus persica HOM05D004245 ORTHO05D004783 7.4e-21 103.6 68 80.9
CiPaw.15G077400 Carya illinoinensis HOM05D004245 ORTHO05D004783 1.6e-20 102.4 70 75.7
FvH4_2g39911 Fragaria vesca HOM05D004245 ORTHO05D004783 1.6e-20 102.4 69 73.9
MD15G1031300 Malus domestica HOM05D004245 ORTHO05D004783 1.6e-20 102.4 68 79.4
Peaxi162Scf00037g01715 Petunia axillaris HOM05D004245 ORTHO05D004783 1.6e-20 102.4 58 89.7
Solyc01g100030.5.1 Solanum lycopersicum HOM05D004245 ORTHO05D004783 1.6e-20 102.4 63 84.1
CANSAT11G0204 Cannabis sativa HOM05D004245 ORTHO05D004783 2.1e-20 102.1 69 78.3
Cc10_g03000 Coffea canephora HOM05D004245 ORTHO05D004783 2.1e-20 102.1 58 86.2
PGSC0003DMG400024725 Solanum tuberosum HOM05D004245 ORTHO05D004783 2.1e-20 102.1 58 89.7
Hund11091 Selenicereus undatus HOM05D004245 ORTHO05D004783 3.7e-20 101.3 73 71.2
Sopen01g043550 Solanum pennellii HOM05D004245 ORTHO05D004783 3.7e-20 101.3 63 84.1
Lsat_1_v5_gn_5_29181 Lactuca sativa HOM05D004245 ORTHO05D004783 4.8e-20 100.9 59 84.7
Lj4A41T61 Lonicera japonica HOM05D004245 ORTHO05D004783 6.2e-20 100.5 71 74.6
Psat5g146640 Pisum sativum HOM05D004245 ORTHO05D004783 6.2e-20 100.5 68 75.0
MSTRG.1283 Avicennia marina HOM05D004245 ORTHO05D004783 1.1e-19 99.8 71 70.4
MD08G1034400 Malus domestica HOM05D004245 ORTHO05D004783 1.1e-19 99.8 68 77.9
AL5G26160 Arabidopsis lyrata HOM05D004245 ORTHO05D004783 1.4e-19 99.4 68 75.0
CARHR155580 Cardamine hirsuta HOM05D004245 ORTHO05D004783 1.4e-19 99.4 77 68.8
Oeu029863.1 Olea europaea HOM05D004245 ORTHO05D004783 1.4e-19 99.4 75 70.7
Oeu049959.1 Olea europaea HOM05D004245 ORTHO05D004783 1.4e-19 99.4 75 69.3
Oeu049960.1 Olea europaea HOM05D004245 ORTHO05D004783 1.4e-19 99.4 75 69.3
Sabra02G0198600 Salix brachista HOM05D004245 ORTHO05D004783 1.4e-19 99.4 79 67.1
TPR.G37404 Trifolium pratense HOM05D004245 ORTHO05D004783 1.4e-19 99.4 70 70.0
Thhalv10011147m.g Eutrema salsugineum HOM05D004245 ORTHO05D004783 1.8e-19 99.0 68 73.5
HanXRQChr08g0223611 Helianthus annuus HOM05D004245 ORTHO05D004783 1.8e-19 99.0 67 76.1
PSO832G4589 Papaver somniferum HOM05D004245 ORTHO05D004783 1.8e-19 99.0 71 73.2
Sp5g14800 Schrenkiella parvula HOM05D004245 ORTHO05D004783 1.8e-19 99.0 77 67.5
TPR.G19056 Trifolium pratense HOM05D004245 ORTHO05D004783 1.8e-19 99.0 75 69.3
THA.LOC104813208 Tarenaya hassleriana HOM05D004245 ORTHO05D004783 2.4e-19 98.6 72 72.2
AUR62027309 Chenopodium quinoa HOM05D004245 ORTHO05D004783 3.1e-19 98.2 70 71.4
Medtr3g063110 Medicago truncatula HOM05D004245 ORTHO05D004783 3.1e-19 98.2 75 66.7
Nitab4.5_0006179g0050 Nicotiana tabacum HOM05D004245 ORTHO05D004783 3.1e-19 98.2 66 75.8
QL02p008410 Quercus lobata HOM05D004245 ORTHO05D004783 3.1e-19 98.2 69 73.9
DCAR_020970 Daucus carota HOM05D004245 ORTHO05D004783 4.0e-19 97.8 58 82.8
ECA246G2445 Erigeron canadensis HOM05D004245 ORTHO05D004783 4.0e-19 97.8 69 75.4
Rhsim07G0237700 Rhododendron simsii HOM05D004245 ORTHO05D004783 4.0e-19 97.8 60 83.3
Thecc.08G025300 Theobroma cacao HOM05D004245 ORTHO05D004783 4.0e-19 97.8 74 67.6
vmacro04520 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 4.0e-19 97.8 60 83.3
Cc00_g32610 Coffea canephora HOM05D004245 ORTHO05D004783 5.3e-19 97.4 58 84.5
HanXRQChr05g0151891 Helianthus annuus HOM05D004245 ORTHO05D004783 5.3e-19 97.4 67 77.6
Oeu056187.1 Olea europaea HOM05D004245 ORTHO05D004783 5.3e-19 97.4 71 73.2
Potri.002G261900 Populus trichocarpa HOM05D004245 ORTHO05D004783 5.3e-19 97.4 74 70.3
Aqoxy2G01756 Aquilegia oxysepala HOM05D004245 ORTHO05D004783 6.9e-19 97.1 75 65.3
EL10Ac5g11904 Beta vulgaris HOM05D004245 ORTHO05D004783 6.9e-19 97.1 75 68.0
A06p20620 Brassica napus HOM05D004245 ORTHO05D004783 6.9e-19 97.1 68 72.1
C03p71110 Brassica napus HOM05D004245 ORTHO05D004783 6.9e-19 97.1 68 72.1
BolC3t19396H Brassica oleracea HOM05D004245 ORTHO05D004783 6.9e-19 97.1 68 72.1
BraA06t25141Z Brassica rapa HOM05D004245 ORTHO05D004783 6.9e-19 97.1 68 72.1
Ciclev10002428m.g Citrus clementina HOM05D004245 ORTHO05D004783 6.9e-19 97.1 73 69.9
DCAR_020361 Daucus carota HOM05D004245 ORTHO05D004783 6.9e-19 97.1 65 78.5
Lsat_1_v5_gn_8_78860 Lactuca sativa HOM05D004245 ORTHO05D004783 6.9e-19 97.1 63 77.8
Nitab4.5_0002612g0110 Nicotiana tabacum HOM05D004245 ORTHO05D004783 6.9e-19 97.1 59 83.1
TAR365G0431 Trochodendron aralioides HOM05D004245 ORTHO05D004783 6.9e-19 97.1 65 76.9
TAR381G1372 Trochodendron aralioides HOM05D004245 ORTHO05D004783 6.9e-19 97.1 65 76.9
AT3G46940 Arabidopsis thaliana HOM05D004245 ORTHO05D004783 9.0e-19 96.7 68 72.1
Carub.0005s1316 Capsella rubella HOM05D004245 ORTHO05D004783 9.0e-19 96.7 78 66.7
Cpa.g.sc36.67 Carica papaya HOM05D004245 ORTHO05D004783 9.0e-19 96.7 65 78.5
Ca_15096_v3 Cicer arietinum L. HOM05D004245 ORTHO05D004783 9.0e-19 96.7 76 71.1
MELO3C010935.2 Cucumis melo HOM05D004245 ORTHO05D004783 9.0e-19 96.7 65 76.9
QL02p008145 Quercus lobata HOM05D004245 ORTHO05D004783 9.0e-19 96.7 69 73.9
TWI56G0048 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 9.0e-19 96.7 67 76.1
Dinv36073 Davidia involucrata HOM05D004245 ORTHO05D004783 1.2e-18 96.3 65 76.9
Manes.05G161000 Manihot esculenta HOM05D004245 ORTHO05D004783 1.2e-18 96.3 69 71.0
SGA_v2.0_scaffold326G48710 Striga asiatica HOM05D004245 ORTHO05D004783 1.2e-18 96.3 59 81.4
Cfa018886 Carpinus fangiana HOM05D004245 ORTHO05D004783 1.5e-18 95.9 60 83.3
Eucgr.F01560 Eucalyptus grandis HOM05D004245 ORTHO05D004783 1.5e-18 95.9 69 72.5
Gohir.D05G198000 Gossypium hirsutum HOM05D004245 ORTHO05D004783 1.5e-18 95.9 73 67.1
Gorai.009G203100 Gossypium raimondii HOM05D004245 ORTHO05D004783 1.5e-18 95.9 73 67.1
Os03g0669100 Oryza sativa ssp. japonica HOM05D004245 ORTHO05D004783 1.5e-18 95.9 65 73.8
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 1.5e-18 95.9 74 70.3
Glyma.18G048400 Glycine max HOM05D004245 ORTHO05D004783 2.0e-18 95.5 75 70.7
Gohir.A05G194800 Gossypium hirsutum HOM05D004245 ORTHO05D004783 2.0e-18 95.5 69 69.6
MBI16_g37752_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 2.0e-18 95.5 71 67.6
MD08G1034500 Malus domestica HOM05D004245 ORTHO05D004783 2.0e-18 95.5 58 84.5
GSVIVG01009696001 Vitis vinifera HOM05D004245 ORTHO05D004783 2.0e-18 95.5 59 83.1
CAN.G1273.28 Capsicum annuum HOM05D004245 ORTHO05D004783 2.6e-18 95.1 68 73.5
COL.COLO4_26330 Corchorus olitorius HOM05D004245 ORTHO05D004783 2.6e-18 95.1 74 67.6
Lalb_Chr10g0103901 Lupinus albus HOM05D004245 ORTHO05D004783 2.6e-18 95.1 65 75.4
TWI12G0235 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 2.6e-18 95.1 67 74.6
Aa31LG4G15890 Aethionema arabicum HOM05D004245 ORTHO05D004783 3.4e-18 94.7 68 73.5
CsaV3_2G028630 Cucumis sativus L. HOM05D004245 ORTHO05D004783 3.4e-18 94.7 65 75.4
Manes.18G027901 Manihot esculenta HOM05D004245 ORTHO05D004783 3.4e-18 94.7 59 78.0
Actinidia29827 Actinidia chinensis HOM05D004245 ORTHO05D004783 5.8e-18 94.0 68 72.1
Ah.12g056070 Amaranthus hybridus HOM05D004245 ORTHO05D004783 5.8e-18 94.0 69 71.0
MSTRG.22299 Avicennia marina HOM05D004245 ORTHO05D004783 5.8e-18 94.0 68 70.6
Glyma.14G207800 Glycine max HOM05D004245 ORTHO05D004783 5.8e-18 94.0 68 72.1
Phvul.008G243100 Phaseolus vulgaris HOM05D004245 ORTHO05D004783 5.8e-18 94.0 68 72.1
Sed0016726 Sechium edule HOM05D004245 ORTHO05D004783 5.8e-18 94.0 55 85.5
VMungo0647G1970 Vigna mungo HOM05D004245 ORTHO05D004783 5.8e-18 94.0 68 72.1
Duzib116G0455 Durio zibethinus HOM05D004245 ORTHO05D004783 7.6e-18 93.6 74 66.2
Sc02g0006240 Simmondsia chinensis HOM05D004245 ORTHO05D004783 7.6e-18 93.6 79 65.8
GSVIVG01037336001 Vitis vinifera HOM05D004245 ORTHO05D004783 1.0e-17 93.2 69 71.0
Actinidia38010 Actinidia chinensis HOM05D004245 ORTHO05D004783 1.3e-17 92.8 81 64.2
CDE04G3793 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 1.3e-17 92.8 65 73.8
AUR62007424 Chenopodium quinoa HOM05D004245 ORTHO05D004783 1.3e-17 92.8 73 69.9
Migut.N00497 Erythranthe guttata HOM05D004245 ORTHO05D004783 1.3e-17 92.8 68 72.1
ClCG08G015180 Citrullus lanatus HOM05D004245 ORTHO05D004783 1.7e-17 92.4 65 72.3
Zm00001eb052270 Zea mays HOM05D004245 ORTHO05D004783 1.7e-17 92.4 71 67.6
Atru.chr13.494 Acer truncatum HOM05D004245 ORTHO05D004783 2.2e-17 92.0 69 68.1
Nn5g29570 Nelumbo nucifera HOM05D004245 ORTHO05D004783 2.2e-17 92.0 79 63.3
CDE12G0639 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 2.9e-17 91.7 65 72.3
Atru.chr13.1763 Acer truncatum HOM05D004245 ORTHO05D004783 3.8e-17 91.3 69 69.6
Cfa018144 Carpinus fangiana HOM05D004245 ORTHO05D004783 3.8e-17 91.3 65 73.8
Ciclev10009684m.g Citrus clementina HOM05D004245 ORTHO05D004783 3.8e-17 91.3 70 68.6
Nn1g05030 Nelumbo nucifera HOM05D004245 ORTHO05D004783 4.9e-17 90.9 65 70.8
Duzib093G0228 Durio zibethinus HOM05D004245 ORTHO05D004783 8.4e-17 90.1 55 80.0
Lalb_Chr17g0345751 Lupinus albus HOM05D004245 ORTHO05D004783 8.4e-17 90.1 65 72.3
PSO764G0231 Papaver somniferum HOM05D004245 ORTHO05D004783 8.4e-17 90.1 71 69.0
Rhsim06G0034500 Rhododendron simsii HOM05D004245 ORTHO05D004783 8.4e-17 90.1 72 63.9
HPP92_000905 Vanilla planifolia HOM05D004245 ORTHO05D004783 1.1e-16 89.7 65 70.8
TWI36G0248 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 1.4e-16 89.4 80 62.5
PGR031G3519 Punica granatum HOM05D004245 ORTHO05D004783 1.9e-16 89.0 68 69.1
Actinidia22552 Actinidia chinensis HOM05D004245 ORTHO05D004783 2.5e-16 88.6 65 73.8
SEGI_17618 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 2.5e-16 88.6 74 63.5
MBI16_g37698_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 7.1e-16 87.0 69 69.6
SEGI_12681 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 1.2e-15 86.3 73 61.6
SMO146G0275 Selaginella moellendorffii HOM05D004245 ORTHO05D004783 6.0e-15 84.0 66 65.2
ATR0124G052 Amborella trichopoda HOM05D004245 ORTHO05D004783 1.3e-14 82.8 65 67.7
PSO591G0217 Papaver somniferum HOM05D004245 ORTHO05D004783 1.3e-14 82.8 71 64.8
Pp3c16_25660 Physcomitrium patens HOM05D004245 ORTHO05D004783 1.3e-14 82.8 55 78.2
Mapoly0133s0010 Marchantia polymorpha HOM05D004245 ORTHO05D004783 6.7e-14 80.5 65 60.0
AagrBONN_evm.TU.Sc2ySwM_117.1092 Anthoceros agrestis HOM05D004245 ORTHO05D004783 5.7e-13 77.4 65 60.0
CBR_g37457 Chara braunii HOM05D004245 ORTHO05D004783 2.1e-12 75.5 55 69.1
Peaxi162Scf00690g00216 Petunia axillaris HOM05D004245 ORTHO05D004783 2.1e-12 75.5 68 58.8
vmacro21634 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 1.4e-11 72.8 93 48.4
MCO05G374 Micromonas commoda HOM05D004245 ORTHO05D004783 3.1e-11 71.6 65 58.5
Cc10_g02990 Coffea canephora HOM05D004245 ORTHO05D004783 4.0e-11 71.2 58 62.1
Cre16.g667850 Chlamydomonas reinhardtii HOM05D004245 ORTHO05D004783 9.0e-11 70.1 56 58.9
Nitab4.5_0004954g0010 Nicotiana tabacum HOM05D004245 ORTHO05D004783 1.2e-10 69.7 68 52.9
HPP92_000939 Vanilla planifolia HOM05D004245 ORTHO05D004783 4.5e-10 67.8 83 53.0
CAN.G1226.1 Capsicum annuum HOM05D004245 ORTHO05D004783 3.8e-09 64.7 65 52.3
Solyc04g080250.3 Solanum lycopersicum HOM05D004245 ORTHO05D004783 8.4e-09 63.5 58 56.9
SHI03308 Sapria himalayana HOM05D004245 ORTHO05D004783 1.1e-08 63.2 54 61.1
PGSC0003DMG400005159 Solanum tuberosum HOM05D004245 ORTHO05D004783 3.2e-08 61.6 68 47.1
PRCOL_00002276 Prasinoderma coloniale HOM05D004245 ORTHO05D004783 4.6e-07 57.8 55 52.7
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 4.6e-07 57.8 54 55.6
SGA_v2.0_scaffold54G19528 Striga asiatica HOM05D016034 ORTHO05D000013 1.3e-06 56.2 30 83.3
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 5.1e-06 54.3 41 65.9


User provided reference genes

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