Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 5.9e-106 387.5 191 100.0
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 5.6e-104 380.9 191 97.4
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 2.8e-103 378.6 188 98.4
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 2.8e-103 378.6 188 98.4
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 1.3e-100 369.8 188 95.2
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 2.9e-100 368.6 188 94.7
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 6.4e-100 367.5 188 94.7
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 6.4e-100 367.5 188 95.2
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 2.4e-99 365.5 188 94.1
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 2.4e-99 365.5 188 94.1
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 1.2e-98 363.2 188 93.1
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.2e-98 363.2 188 93.1
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.2e-98 363.2 188 93.1
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 1.6e-98 362.8 188 93.1
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 1.6e-98 362.8 188 92.6
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 1.6e-98 362.8 188 93.1
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 2.0e-98 362.5 188 93.1
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 2.0e-98 362.5 188 93.1
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 2.0e-98 362.5 188 93.1
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 2.0e-98 362.5 188 92.0
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 2.0e-98 362.5 188 92.0
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 2.7e-98 362.1 188 93.6
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 2.7e-98 362.1 188 93.1
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 3.5e-98 361.7 188 92.0
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 3.5e-98 361.7 188 92.6
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 3.5e-98 361.7 188 93.1
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 4.6e-98 361.3 188 92.6
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 6.0e-98 360.9 188 93.1
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 6.0e-98 360.9 188 92.6
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 7.8e-98 360.5 189 93.1
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 1.0e-97 360.1 188 92.0
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.3e-97 359.8 188 92.6
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 1.3e-97 359.8 188 91.5
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 1.3e-97 359.8 188 92.6
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 1.3e-97 359.8 188 91.5
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 1.3e-97 359.8 188 91.5
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 1.3e-97 359.8 188 93.1
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 1.7e-97 359.4 188 91.5
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 1.7e-97 359.4 188 91.5
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 1.7e-97 359.4 188 92.0
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 1.7e-97 359.4 188 92.0
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 2.3e-97 359.0 188 92.0
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 2.3e-97 359.0 188 92.0
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 3.0e-97 358.6 188 93.1
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 3.0e-97 358.6 188 91.0
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 3.0e-97 358.6 188 91.5
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 3.0e-97 358.6 188 91.0
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 3.9e-97 358.2 188 92.6
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 5.0e-97 357.8 188 91.0
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 5.0e-97 357.8 188 92.0
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 5.0e-97 357.8 188 92.0
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 5.0e-97 357.8 188 92.0
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 5.0e-97 357.8 188 92.0
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 6.6e-97 357.5 188 91.0
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 6.6e-97 357.5 188 91.5
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 8.6e-97 357.1 195 91.3
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 8.6e-97 357.1 188 92.6
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 1.5e-96 356.3 188 91.5
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 1.5e-96 356.3 188 90.4
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 1.9e-96 355.9 188 92.0
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 3.3e-96 355.1 188 89.9
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 3.3e-96 355.1 188 89.9
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 9.5e-96 353.6 188 88.8
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 1.6e-95 352.8 188 88.8
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 1.6e-95 352.8 188 89.4
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 1.6e-95 352.8 188 90.4
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 2.1e-95 352.4 200 87.0
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 2.8e-95 352.1 193 89.6
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 4.7e-95 351.3 188 87.8
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 6.2e-95 350.9 188 88.8
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 1.8e-94 349.4 188 87.2
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 1.8e-94 349.4 210 82.4
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 2.3e-94 349.0 188 88.8
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 5.2e-94 347.8 188 86.7
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 5.2e-94 347.8 188 88.8
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 5.2e-94 347.8 188 90.4
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 6.8e-94 347.4 215 81.4
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 6.8e-94 347.4 188 87.2
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 1.2e-93 346.7 188 86.7
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 1.5e-93 346.3 201 86.1
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 3.4e-93 345.1 170 99.4
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 4.4e-93 344.7 188 87.8
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 5.8e-93 344.4 183 90.2
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 7.5e-93 344.0 188 85.6
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 9.8e-93 343.6 188 85.6
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 9.8e-93 343.6 188 85.6
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 1.3e-92 343.2 188 85.6
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 1.7e-92 342.8 189 84.7
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 2.9e-92 342.0 195 85.6
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 3.7e-92 341.7 188 84.6
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 3.7e-92 341.7 188 84.6
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 4.9e-92 341.3 188 85.1
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 1.1e-91 340.1 188 85.6
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 1.9e-91 339.3 188 85.1
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 7.1e-91 337.4 229 75.1
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 7.1e-91 337.4 189 82.5
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 9.2e-91 337.0 214 79.0
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 1.3e-89 333.2 188 82.4
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 2.3e-89 332.4 188 81.4
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.8e-87 325.5 188 79.8
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 6.2e-87 324.3 188 79.3
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 3.1e-86 322.0 181 87.8
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 3.1e-86 322.0 181 87.8
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 4.4e-85 318.2 188 78.2
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 1.3e-84 316.6 170 87.6
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.2e-84 315.8 188 77.7
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 4.9e-84 314.7 188 79.3
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 1.7e-81 306.2 167 88.0
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 3.9e-81 305.1 160 91.2
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 3.3e-80 302.0 160 89.4
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 3.1e-78 295.4 160 88.1
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 8.9e-78 293.9 209 74.2
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 1.4e-75 286.6 161 86.3
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 4.6e-74 281.6 170 82.4
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 2.4e-67 259.2 188 67.6
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.4e-62 243.4 188 64.4
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 2.6e-61 239.2 140 82.1
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 7.1e-59 231.1 183 60.7
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 4.3e-56 221.9 206 52.9
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.6e-55 219.9 112 98.2
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 2.8e-55 219.2 149 74.5
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 2.4e-54 216.1 111 91.0
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 1.3e-52 210.3 129 81.4
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 3.8e-52 208.8 111 90.1
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 1.6e-50 203.4 106 86.8
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 1.6e-50 203.4 109 89.9
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 2.3e-49 199.5 158 63.9
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 3.0e-49 199.1 109 89.9
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 1.8e-38 163.3 79 96.2
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 9.1e-38 161.0 79 93.7
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.2e-37 160.6 79 93.7
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 2.0e-37 159.8 79 93.7
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 3.4e-37 159.1 80 91.2
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 7.2e-35 151.4 84 86.9
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 2.1e-34 149.8 81 88.9
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 8.8e-33 144.4 157 45.9
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 1.3e-31 140.6 71 90.1
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 5.3e-30 135.2 68 88.2
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 2.6e-29 132.9 68 89.7
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 1.9e-27 126.7 87 75.9
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 4.7e-26 122.1 68 82.4
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 4.7e-26 122.1 68 82.4
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 1.4e-25 120.6 68 80.9
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 8.0e-18 94.7 51 80.4
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 8.8e-17 91.3 47 85.1
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 1.1e-11 74.3 37 89.2
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 1.1e-11 74.3 37 89.2
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 1.1e-11 74.3 37 89.2
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 1.1e-11 74.3 37 89.2
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 1.1e-11 74.3 37 89.2


User provided reference genes

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