Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002828g0150 Nicotiana tabacum HOM05D004764 ORTHO05D005580 3.0e-180 635.2 345 100.0
Nitab4.5_0000344g0160 Nicotiana tabacum HOM05D004764 ORTHO05D005580 2.8e-106 389.4 391 63.9
Nitab4.5_0012769g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 5.3e-105 385.2 391 63.2
CAN.G308.66 Capsicum annuum HOM05D004764 ORTHO05D005580 4.0e-100 369.0 391 59.8
Sopen03g006610 Solanum pennellii HOM05D004764 ORTHO05D005580 4.0e-100 369.0 391 60.1
CAN.G2159.1 Capsicum annuum HOM05D004764 ORTHO05D005580 5.7e-99 365.2 391 58.6
Solyc04g071730.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 7.0e-97 358.2 391 59.6
Sopen04g027710 Solanum pennellii HOM05D004764 ORTHO05D005580 1.3e-95 354.0 391 58.8
PGSC0003DMG400006372 Solanum tuberosum HOM05D004764 ORTHO05D005580 3.8e-95 352.4 391 58.8
Peaxi162Scf00064g00126 Petunia axillaris HOM05D004764 ORTHO05D005580 9.4e-94 347.8 391 57.5
Peaxi162Scf00010g01114 Petunia axillaris HOM05D004764 ORTHO05D005580 8.0e-93 344.7 391 57.3
Solyc03g033850.3 Solanum lycopersicum HOM05D004764 ORTHO05D005580 2.6e-91 339.7 303 66.7
Migut.F01566 Erythranthe guttata HOM05D004764 ORTHO05D005580 1.7e-82 310.5 392 51.8
SalBow6G7043 Salvia bowleyana HOM05D004764 ORTHO05D005580 3.7e-82 309.3 391 51.4
Cc02_g20660 Coffea canephora HOM05D004764 ORTHO05D005580 2.4e-81 306.6 391 51.7
MSTRG.8305 Avicennia marina HOM05D004764 ORTHO05D005580 2.3e-79 300.1 391 50.1
vmacro01597 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 1.5e-78 297.4 391 50.4
Lj1A432T27 Lonicera japonica HOM05D004764 ORTHO05D005580 1.6e-77 293.9 391 50.4
SGA_v2.0_scaffold130G34221 Striga asiatica HOM05D004764 ORTHO05D005580 8.0e-77 291.6 391 48.8
Actinidia00927 Actinidia chinensis HOM05D004764 ORTHO05D005580 3.0e-76 289.7 364 52.5
GSVIVG01016388001 Vitis vinifera HOM05D004764 ORTHO05D005580 3.0e-76 289.7 391 48.8
CSS0016003 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 4.0e-76 289.3 391 49.6
Ciclev10032191m.g Citrus clementina HOM05D004764 ORTHO05D005580 4.0e-76 289.3 391 50.1
Dinv20933 Davidia involucrata HOM05D004764 ORTHO05D005580 5.2e-76 288.9 391 49.1
Dinv21011 Davidia involucrata HOM05D004764 ORTHO05D005580 5.2e-76 288.9 391 49.1
CSS0010099 Camellia sinensis var. sinensis HOM05D004764 ORTHO05D005580 8.9e-76 288.1 391 49.4
Medtr6g084580 Medicago truncatula HOM05D004764 ORTHO05D005580 2.0e-75 287.0 391 50.9
TWI09G1390 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 2.6e-75 286.6 391 49.9
QL07p043722 Quercus lobata HOM05D004764 ORTHO05D005580 3.4e-75 286.2 390 49.5
Potri.010G194300 Populus trichocarpa HOM05D004764 ORTHO05D005580 4.4e-75 285.8 391 49.9
Lj2g0017902 Lotus japonicus HOM05D004764 ORTHO05D005580 7.5e-75 285.0 391 50.4
Lj1C949T1 Lonicera japonica HOM05D004764 ORTHO05D005580 9.8e-75 284.6 391 49.6
TWI73G0601 Tripterygium wilfordii HOM05D004764 ORTHO05D005580 9.8e-75 284.6 391 49.6
Cfa017589 Carpinus fangiana HOM05D004764 ORTHO05D005580 1.3e-74 284.3 391 49.1
Ca_25497_v3 Cicer arietinum L. HOM05D004764 ORTHO05D005580 2.2e-74 283.5 391 50.1
Psat1g037840 Pisum sativum HOM05D004764 ORTHO05D005580 3.7e-74 282.7 391 50.1
COL.COLO4_25609 Corchorus olitorius HOM05D004764 ORTHO05D005580 8.3e-74 281.6 391 49.4
Manes.10G019100 Manihot esculenta HOM05D004764 ORTHO05D005580 2.4e-73 280.0 391 48.3
Cpa.g.sc19.234 Carica papaya HOM05D004764 ORTHO05D005580 3.2e-73 279.6 391 48.8
THA.LOC104816565 Tarenaya hassleriana HOM05D004764 ORTHO05D005580 4.1e-73 279.3 393 48.3
Thecc.10G137500 Theobroma cacao HOM05D004764 ORTHO05D005580 4.1e-73 279.3 391 49.6
CiPaw.10G131000 Carya illinoinensis HOM05D004764 ORTHO05D005580 5.4e-73 278.9 391 47.1
Rhsim09G0171300 Rhododendron simsii HOM05D004764 ORTHO05D005580 7.0e-73 278.5 435 45.5
Lj1g0004796 Lotus japonicus HOM05D004764 ORTHO05D005580 9.2e-73 278.1 391 48.8
Ciclev10016032m.g Citrus clementina HOM05D004764 ORTHO05D005580 1.6e-72 277.3 391 48.8
Phvul.004G157700 Phaseolus vulgaris HOM05D004764 ORTHO05D005580 2.7e-72 276.6 391 48.3
MD02G1196300 Malus domestica HOM05D004764 ORTHO05D005580 5.9e-72 275.4 391 48.3
CANSAT21G1253 Cannabis sativa HOM05D004764 ORTHO05D005580 7.8e-72 275.0 391 48.1
Lalb_Chr22g0353041 Lupinus albus HOM05D004764 ORTHO05D005580 1.0e-71 274.6 391 48.8
Atru.chr12.324 Acer truncatum HOM05D004764 ORTHO05D005580 1.3e-71 274.2 391 48.3
Aa31LG10G3070 Aethionema arabicum HOM05D004764 ORTHO05D005580 1.7e-71 273.9 391 46.5
HanXRQChr12g0369401 Helianthus annuus HOM05D004764 ORTHO05D005580 1.7e-71 273.9 391 47.3
VMungo0464G2049 Vigna mungo HOM05D004764 ORTHO05D005580 1.7e-71 273.9 391 48.8
MELO3C008270.2 Cucumis melo HOM05D004764 ORTHO05D005580 2.3e-71 273.5 391 48.3
Duzib106G0320 Durio zibethinus HOM05D004764 ORTHO05D005580 2.3e-71 273.5 391 48.8
Atru.chr12.285 Acer truncatum HOM05D004764 ORTHO05D005580 3.0e-71 273.1 391 48.3
Glyma.09G184900 Glycine max HOM05D004764 ORTHO05D005580 3.0e-71 273.1 391 48.6
vmacro10073 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.0e-71 273.1 330 53.3
Gorai.011G278800 Gossypium raimondii HOM05D004764 ORTHO05D005580 6.6e-71 271.9 391 48.3
Sed0006926 Sechium edule HOM05D004764 ORTHO05D005580 6.6e-71 271.9 391 48.1
AL1G59680 Arabidopsis lyrata HOM05D004764 ORTHO05D005580 1.5e-70 270.8 392 47.4
Gohir.A10G228400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 4.3e-70 269.2 391 48.3
CARHR041910 Cardamine hirsuta HOM05D004764 ORTHO05D005580 5.6e-70 268.9 391 46.8
Prupe.2G152400 Prunus persica HOM05D004764 ORTHO05D005580 5.6e-70 268.9 391 46.8
DCAR_011775 Daucus carota HOM05D004764 ORTHO05D005580 1.2e-69 267.7 391 46.5
Hund16007 Selenicereus undatus HOM05D004764 ORTHO05D005580 1.2e-69 267.7 391 47.3
ClCG11G006420 Citrullus lanatus HOM05D004764 ORTHO05D005580 6.2e-69 265.4 394 48.2
Lalb_Chr14g0371191 Lupinus albus HOM05D004764 ORTHO05D005580 1.1e-68 264.6 391 48.8
Carub.0001s4061 Capsella rubella HOM05D004764 ORTHO05D005580 1.8e-68 263.8 392 46.2
TAR623G1788 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.8e-68 263.8 391 46.8
Sp1g38390 Schrenkiella parvula HOM05D004764 ORTHO05D005580 3.1e-68 263.1 391 46.0
MD07G1124900 Malus domestica HOM05D004764 ORTHO05D005580 4.0e-68 262.7 391 46.3
Eucgr.G03020 Eucalyptus grandis HOM05D004764 ORTHO05D005580 6.8e-68 261.9 391 46.8
AT1G51740 Arabidopsis thaliana HOM05D004764 ORTHO05D005580 1.2e-67 261.2 391 46.3
RcHm_v2.0_Chr1g0351821 Rosa chinensis HOM05D004764 ORTHO05D005580 1.2e-67 261.2 391 45.8
PGR142G0534 Punica granatum HOM05D004764 ORTHO05D005580 1.5e-67 260.8 392 46.2
TAR369G1012 Trochodendron aralioides HOM05D004764 ORTHO05D005580 1.5e-67 260.8 391 46.5
EL10Ac2g04766 Beta vulgaris HOM05D004764 ORTHO05D005580 2.0e-67 260.4 391 47.8
ECA233G3311 Erigeron canadensis HOM05D004764 ORTHO05D005580 2.0e-67 260.4 392 46.2
Thhalv10011542m.g Eutrema salsugineum HOM05D004764 ORTHO05D005580 2.0e-67 260.4 391 46.5
FAN10G3109 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.0e-67 260.4 391 46.3
BcaB02g11053 Brassica carinata HOM05D004764 ORTHO05D005580 1.3e-66 257.7 391 45.8
arahy.Tifrunner.gnm1.ann1.BR1H5V Arachis hypogaea HOM05D004764 ORTHO05D005580 1.7e-66 257.3 391 47.3
CsaV3_6G001590 Cucumis sativus L. HOM05D004764 ORTHO05D005580 1.7e-66 257.3 303 54.1
FAN10G1216 Fragaria x ananassa HOM05D004764 ORTHO05D005580 2.9e-66 256.5 390 45.6
FvH4_7g12790 Fragaria vesca HOM05D004764 ORTHO05D005580 3.7e-66 256.1 391 45.5
Ah.02g115950 Amaranthus hybridus HOM05D004764 ORTHO05D005580 4.9e-66 255.8 391 45.5
Ah.16g104720 Amaranthus hybridus HOM05D004764 ORTHO05D005580 8.3e-66 255.0 391 45.8
Gohir.D10G242400 Gossypium hirsutum HOM05D004764 ORTHO05D005580 1.9e-65 253.8 303 53.8
AUR62041843 Chenopodium quinoa HOM05D004764 ORTHO05D005580 2.0e-64 250.4 363 47.4
Aqoxy7G01280 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 3.5e-64 249.6 391 45.5
Lsat_1_v5_gn_8_14200 Lactuca sativa HOM05D004764 ORTHO05D005580 3.5e-64 249.6 388 45.1
arahy.Tifrunner.gnm1.ann1.V0Z2W7 Arachis hypogaea HOM05D004764 ORTHO05D005580 2.3e-63 246.9 391 45.8
FAN06G0806 Fragaria x ananassa HOM05D004764 ORTHO05D005580 5.0e-63 245.7 303 51.2
FAN01G0026 Fragaria x ananassa HOM05D004764 ORTHO05D005580 6.6e-63 245.4 426 41.5
Aqoxy1G00756 Aquilegia oxysepala HOM05D004764 ORTHO05D005580 3.3e-62 243.0 391 43.7
unitig_0.g2163 Utricularia gibba HOM05D004764 ORTHO05D005580 3.3e-62 243.0 394 42.4
Os04g0530400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 9.5e-62 241.5 392 44.1
BraA06t23434Z Brassica rapa HOM05D004764 ORTHO05D005580 2.8e-61 240.0 374 44.7
A06p02240 Brassica napus HOM05D004764 ORTHO05D005580 3.6e-61 239.6 374 44.9
Zm00001eb429110 Zea mays HOM05D004764 ORTHO05D005580 3.6e-61 239.6 393 43.5
Os12g0154400 Oryza sativa ssp. japonica HOM05D004764 ORTHO05D005580 6.2e-61 238.8 392 43.9
BolC6t35797H Brassica oleracea HOM05D004764 ORTHO05D005580 1.1e-60 238.0 374 44.1
BcaB07g33630 Brassica carinata HOM05D004764 ORTHO05D005580 4.0e-60 236.1 377 43.8
PSO585G0029 Papaver somniferum HOM05D004764 ORTHO05D005580 6.8e-60 235.3 391 41.7
PSO384G2817 Papaver somniferum HOM05D004764 ORTHO05D005580 8.9e-60 235.0 391 42.5
Oeu013001.1 Olea europaea HOM05D004764 ORTHO05D005580 2.2e-58 230.3 329 47.4
Lsat_1_v5_gn_9_12660 Lactuca sativa HOM05D004764 ORTHO05D005580 1.1e-57 228.0 391 42.2
Glyma.07G091000 Glycine max HOM05D004764 ORTHO05D005580 2.4e-57 226.9 350 47.1
Haze_20561 Corylus avellana HOM05D004764 ORTHO05D005580 2.1e-56 223.8 306 47.1
ATR0736G027 Amborella trichopoda HOM05D004764 ORTHO05D005580 6.0e-56 222.2 393 41.5
BcaC08g43344 Brassica carinata HOM05D004764 ORTHO05D005580 6.0e-56 222.2 366 42.6
C06p07040 Brassica napus HOM05D004764 ORTHO05D005580 8.6e-55 218.4 366 42.1
Nitab4.5_0011923g0010 Nicotiana tabacum HOM05D004764 ORTHO05D005580 1.5e-54 217.6 391 43.5
Nn5g27977 Nelumbo nucifera HOM05D004764 ORTHO05D005580 4.3e-54 216.1 346 45.1
Sabra10G0149400 Salix brachista HOM05D004764 ORTHO05D005580 1.2e-53 214.5 334 45.5
SHI03532 Sapria himalayana HOM05D004764 ORTHO05D005580 6.2e-53 212.2 392 41.8
Sc11g0007530 Simmondsia chinensis HOM05D004764 ORTHO05D005580 3.1e-52 209.9 313 45.7
Lj1C433T7 Lonicera japonica HOM05D004764 ORTHO05D005580 5.2e-52 209.1 291 47.4
SEGI_31890 Sequoiadendron giganteum HOM05D004764 ORTHO05D005580 3.4e-51 206.5 393 38.9
Oeu032670.1 Olea europaea HOM05D004764 ORTHO05D005580 5.4e-49 199.1 254 54.3
TPR.G27934 Trifolium pratense HOM05D004764 ORTHO05D005580 1.2e-48 198.0 255 52.9
AUR62032348 Chenopodium quinoa HOM05D004764 ORTHO05D005580 1.9e-46 190.7 306 44.1
Lj1C435T9 Lonicera japonica HOM05D004764 ORTHO05D005580 1.1e-41 174.9 277 43.3
PGSC0003DMG400022548 Solanum tuberosum HOM05D004764 ORTHO05D005580 5.4e-41 172.6 198 58.1
CDE09G0086 Ceratophyllum demersum HOM05D004764 ORTHO05D005580 2.3e-39 167.2 266 45.5
Mapoly0024s0083 Marchantia polymorpha HOM05D004764 ORTHO05D005580 1.9e-38 164.1 306 40.2
Potri.008G063100 Populus trichocarpa HOM05D004764 ORTHO05D005580 5.3e-36 156.0 218 46.3
SMO356G0668 Selaginella moellendorffii HOM05D004764 ORTHO05D005580 2.9e-34 150.2 384 33.9
Zm00001eb427200 Zea mays HOM05D004764 ORTHO05D005580 6.4e-34 149.1 233 47.2
Actinidia27825 Actinidia chinensis HOM05D004764 ORTHO05D005580 1.1e-33 148.3 223 47.1
HPP92_027811 Vanilla planifolia HOM05D004764 ORTHO05D005580 1.2e-32 144.8 352 36.6
Pp3c6_24680 Physcomitrium patens HOM05D004764 ORTHO05D005580 1.6e-29 134.4 393 30.3
AagrBONN_evm.TU.Sc2ySwM_368.928 Anthoceros agrestis HOM05D004764 ORTHO05D005580 6.2e-29 132.5 305 35.7
C06p13300 Brassica napus HOM05D001194 ORTHO05D005580 1.1e-28 131.7 243 44.4
PSO339G3467 Papaver somniferum HOM05D004764 ORTHO05D005580 5.3e-28 129.4 183 48.1
Glyma.17G199500 Glycine max HOM05D004764 ORTHO05D005580 1.5e-27 127.9 135 61.5
Sabra08G0046500 Salix brachista HOM05D004764 ORTHO05D005580 1.6e-21 107.8 221 36.7
CBR_g29687 Chara braunii HOM05D004764 ORTHO05D005580 4.0e-20 103.2 131 49.6
vmacro10891 Vaccinium macrocarpon HOM05D004764 ORTHO05D005580 3.4e-19 100.1 145 53.1
BcaC08g43937 Brassica carinata HOM05D001194 ORTHO05D004786 1.7e-18 97.8 168 45.2
BolC6t36490H Brassica oleracea HOM05D001194 ORTHO05D000015 3.8e-18 96.7 127 52.0
Actinidia13909 Actinidia chinensis HOM05D004764 ORTHO05D005580 8.7e-15 85.5 124 47.6
Ah.16g102910 Amaranthus hybridus HOM05D004764 ORTHO05D005580 2.5e-14 84.0 49 87.8
MCO05G144 Micromonas commoda HOM05D004764 ORTHO05D005580 5.9e-11 72.8 300 26.0
BraA05t20843Z Brassica rapa HOM05D000051 ORTHO05D000015 4.3e-06 56.6 42 59.5
BcaC08g43936 Brassica carinata HOM05D004764 ORTHO05D005580 7.4e-06 55.8 40 62.5


User provided reference genes

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