Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002824g0150 Nicotiana tabacum HOM05D004059 ORTHO05D004591 6.4e-55 217.2 114 100.0
Peaxi162Scf00498g00054 Petunia axillaris HOM05D004059 ORTHO05D004591 1.6e-26 122.9 122 65.6
PGSC0003DMG400000335 Solanum tuberosum HOM05D000597 ORTHO05D004591 1.1e-25 120.2 127 60.6
Peaxi162Scf00498g00042 Petunia axillaris HOM05D004059 ORTHO05D004591 1.8e-25 119.4 122 63.9
CAN.G52.7 Capsicum annuum HOM05D004059 ORTHO05D004591 3.5e-21 105.1 132 54.5
Nitab4.5_0002593g0060 Nicotiana tabacum HOM05D004059 ORTHO05D004591 4.6e-21 104.8 132 56.8
PGSC0003DMG400022043 Solanum tuberosum HOM05D004059 ORTHO05D004591 4.6e-21 104.8 133 54.9
Nitab4.5_0006053g0020 Nicotiana tabacum HOM05D004059 ORTHO05D004591 1.3e-20 103.2 133 56.4
Peaxi162Scf00028g00036 Petunia axillaris HOM05D004059 ORTHO05D004591 5.1e-20 101.3 119 55.5
Solyc07g039570.3 Solanum lycopersicum HOM05D004059 ORTHO05D004591 6.2e-18 94.4 136 50.7
Sopen07g018910 Solanum pennellii HOM05D004059 ORTHO05D004591 6.2e-18 94.4 136 50.7
CAN.G3656.1 Capsicum annuum HOM05D004059 ORTHO05D004591 9.0e-17 90.5 120 48.3
Dinv36776 Davidia involucrata HOM05D004059 ORTHO05D004591 2.0e-16 89.4 129 47.3
TAR636G3314 Trochodendron aralioides HOM05D004059 ORTHO05D004591 4.5e-16 88.2 104 54.8
VMungo1309G0851 Vigna mungo HOM05D004059 ORTHO05D004591 1.7e-15 86.3 119 50.4
CiPaw.03G214200 Carya illinoinensis HOM05D004059 ORTHO05D004591 2.2e-15 85.9 128 46.1
Cc06_g11520 Coffea canephora HOM05D004059 ORTHO05D004591 2.9e-15 85.5 128 47.7
Glyma.09G064200 Glycine max HOM05D004059 ORTHO05D004591 2.9e-15 85.5 86 54.7
Hma1.2p1_1838F.1_g304870 Hydrangea macrophylla HOM05D004059 ORTHO05D004591 4.9e-15 84.7 92 56.5
Lj7A677T52 Lonicera japonica HOM05D004059 ORTHO05D004591 4.9e-15 84.7 118 50.8
Actinidia29906 Actinidia chinensis HOM05D004059 ORTHO05D004591 6.4e-15 84.3 125 48.8
Phvul.009G231600 Phaseolus vulgaris HOM05D004059 ORTHO05D004591 6.4e-15 84.3 114 47.4
Oeu017604.1 Olea europaea HOM05D004059 ORTHO05D004591 1.1e-14 83.6 131 46.6
TAR624G0558 Trochodendron aralioides HOM05D004059 ORTHO05D004591 1.1e-14 83.6 106 49.1
Lalb_Chr11g0074551 Lupinus albus HOM05D004059 ORTHO05D004591 1.4e-14 83.2 126 45.2
CSS0005796 Camellia sinensis var. sinensis HOM05D004059 ORTHO05D004591 2.4e-14 82.4 128 44.5
CSS0003764 Camellia sinensis var. sinensis HOM05D004059 ORTHO05D004591 3.2e-14 82.0 103 49.5
Glyma.15G170500 Glycine max HOM05D004059 ORTHO05D004591 3.2e-14 82.0 130 45.4
Cfa003070 Carpinus fangiana HOM05D004059 ORTHO05D004591 5.4e-14 81.3 127 45.7
arahy.Tifrunner.gnm1.ann1.H4FASW Arachis hypogaea HOM05D004059 ORTHO05D004591 7.1e-14 80.9 121 43.0
Nn8g38830 Nelumbo nucifera HOM05D004059 ORTHO05D004591 7.1e-14 80.9 94 51.1
vmacro17254 Vaccinium macrocarpon HOM05D004059 ORTHO05D004591 7.1e-14 80.9 88 54.5
Lj6g0002908 Lotus japonicus HOM05D004059 ORTHO05D004591 9.3e-14 80.5 117 45.3
TPR.G13416 Trifolium pratense HOM05D004059 ORTHO05D004591 1.2e-13 80.1 120 46.7
Eucgr.C03476 Eucalyptus grandis HOM05D004059 ORTHO05D004591 3.5e-13 78.6 127 44.1
QL02p062365 Quercus lobata HOM05D004059 ORTHO05D004591 3.5e-13 78.6 127 45.7
MD15G1208900 Malus domestica HOM05D004059 ORTHO05D004591 4.6e-13 78.2 94 51.1
Prupe.7G207500 Prunus persica HOM05D004059 ORTHO05D004591 6.0e-13 77.8 89 53.9
Duzib187G0197 Durio zibethinus HOM05D004059 ORTHO05D004591 7.9e-13 77.4 131 41.2
Rhsim05G0018600 Rhododendron simsii HOM05D004059 ORTHO05D004591 7.9e-13 77.4 91 54.9
MD02G1081600 Malus domestica HOM05D004059 ORTHO05D004591 1.0e-12 77.0 91 51.6
Psat1g140200 Pisum sativum HOM05D004059 ORTHO05D004591 1.0e-12 77.0 120 45.8
GSVIVG01015189001 Vitis vinifera HOM05D004059 ORTHO05D004591 1.3e-12 76.6 118 44.1
Lalb_Chr08g0232291 Lupinus albus HOM05D004059 ORTHO05D004591 1.8e-12 76.3 103 48.5
Manes.16G101000 Manihot esculenta HOM05D004059 ORTHO05D004591 1.8e-12 76.3 120 42.5
Peaxi162Scf00498g00537 Petunia axillaris HOM05D000597 ORTHO05D004591 2.3e-12 75.9 61 67.2
MELO3C015488.2 Cucumis melo HOM05D004059 ORTHO05D004591 3.0e-12 75.5 109 46.8
CsaV3_1G040580 Cucumis sativus L. HOM05D004059 ORTHO05D004591 3.0e-12 75.5 100 49.0
Gohir.A05G030300 Gossypium hirsutum HOM05D004059 ORTHO05D004591 3.0e-12 75.5 134 41.0
Lj4g0028074 Lotus japonicus HOM05D004059 ORTHO05D004591 3.0e-12 75.5 129 43.4
Medtr2g039620 Medicago truncatula HOM05D004059 ORTHO05D004591 3.0e-12 75.5 116 44.8
Rhsim03G0231600 Rhododendron simsii HOM05D004059 ORTHO05D004591 3.0e-12 75.5 135 42.2
Haze_25925 Corylus avellana HOM05D004059 ORTHO05D004591 3.9e-12 75.1 62 64.5
Migut.J00583 Erythranthe guttata HOM05D004059 ORTHO05D004591 6.7e-12 74.3 64 62.5
Hund25946 Selenicereus undatus HOM05D004059 ORTHO05D004591 8.7e-12 73.9 133 41.4
EL10Ac8g19192 Beta vulgaris HOM05D004059 ORTHO05D004591 1.1e-11 73.6 120 40.8
ClCG03G015470 Citrullus lanatus HOM05D004059 ORTHO05D004591 1.1e-11 73.6 116 42.2
ECA240G1274 Erigeron canadensis HOM05D004059 ORTHO05D004591 1.1e-11 73.6 113 43.4
Peaxi162Scf00221g00512 Petunia axillaris HOM05D004059 ORTHO05D004591 1.5e-11 73.2 84 54.8
SGA_v2.0_scaffold62G21623 Striga asiatica HOM05D004059 ORTHO05D004591 1.5e-11 73.2 99 48.5
Duzib168G0233 Durio zibethinus HOM05D004059 ORTHO05D004591 1.9e-11 72.8 131 38.9
Gohir.D05G031700 Gossypium hirsutum HOM05D004059 ORTHO05D004591 2.5e-11 72.4 134 40.3
Gorai.009G031900 Gossypium raimondii HOM05D004059 ORTHO05D004591 2.5e-11 72.4 134 40.3
Peaxi162Scf00498g00056 Petunia axillaris HOM05D004059 ORTHO05D004591 2.5e-11 72.4 91 56.0
TWI34G0199 Tripterygium wilfordii HOM05D004059 ORTHO05D004591 2.5e-11 72.4 130 39.2
CDE04G0617 Ceratophyllum demersum HOM05D004059 ORTHO05D004591 3.3e-11 72.0 62 64.5
HanXRQChr03g0060341 Helianthus annuus HOM05D004059 ORTHO05D004591 3.3e-11 72.0 86 48.8
HanXRQChr09g0238101 Helianthus annuus HOM05D004059 ORTHO05D004591 4.3e-11 71.6 119 45.4
CANSAT56G2242 Cannabis sativa HOM05D004059 ORTHO05D004591 5.6e-11 71.2 77 50.6
FAN26G1668 Fragaria x ananassa HOM05D004059 ORTHO05D004591 5.6e-11 71.2 99 45.5
Ciclev10007937m.g Citrus clementina HOM05D004059 ORTHO05D004591 7.4e-11 70.9 92 48.9
FvH4_1g07710 Fragaria vesca HOM05D004059 ORTHO05D004591 7.4e-11 70.9 97 45.4
Thecc.09G087400 Theobroma cacao HOM05D004059 ORTHO05D004591 9.6e-11 70.5 133 41.4
CiPaw.04G148500 Carya illinoinensis HOM05D004059 ORTHO05D004591 1.3e-10 70.1 131 41.2
FAN23G2659 Fragaria x ananassa HOM05D004059 ORTHO05D004591 1.3e-10 70.1 99 45.5
Glyma.13G105400 Glycine max HOM05D004059 ORTHO05D004591 1.3e-10 70.1 137 39.4
Sed0008144 Sechium edule HOM05D004059 ORTHO05D004591 1.3e-10 70.1 66 57.6
COL.COLO4_18190 Corchorus olitorius HOM05D004059 ORTHO05D004591 1.6e-10 69.7 90 47.8
FAN26G3139 Fragaria x ananassa HOM05D004059 ORTHO05D004591 1.6e-10 69.7 99 44.4
Nn6g35501 Nelumbo nucifera HOM05D004059 ORTHO05D004591 1.6e-10 69.7 94 45.7
CDE06G2535 Ceratophyllum demersum HOM05D004059 ORTHO05D004591 2.8e-10 68.9 62 61.3
Thhalv10013360m.g Eutrema salsugineum HOM05D004059 ORTHO05D004591 2.8e-10 68.9 97 44.3
Gorai.010G083900 Gossypium raimondii HOM05D004059 ORTHO05D004591 2.8e-10 68.9 123 43.9
PGR102G2684 Punica granatum HOM05D004059 ORTHO05D004591 3.6e-10 68.6 93 47.3
RcHm_v2.0_Chr2g0093571 Rosa chinensis HOM05D004059 ORTHO05D004591 3.6e-10 68.6 119 40.3
FAN19G2456 Fragaria x ananassa HOM05D004059 ORTHO05D004591 4.8e-10 68.2 97 44.3
Lj4C294G8 Lonicera japonica HOM05D004059 ORTHO05D004591 4.8e-10 68.2 88 50.0
Lj4C294T9 Lonicera japonica HOM05D004059 ORTHO05D004591 4.8e-10 68.2 88 50.0
Manes.03G034700 Manihot esculenta HOM05D004059 ORTHO05D004591 6.2e-10 67.8 112 40.2
Potri.006G148800 Populus trichocarpa HOM05D004059 ORTHO05D004591 6.2e-10 67.8 124 40.3
vmacro06298 Vaccinium macrocarpon HOM05D004059 ORTHO05D004591 6.2e-10 67.8 65 53.8
FAN28G1400 Fragaria x ananassa HOM05D004059 ORTHO05D004591 8.1e-10 67.4 147 38.8
Aqoxy7G04020 Aquilegia oxysepala HOM05D004059 ORTHO05D004591 1.1e-09 67.0 127 40.2
CAN.G1583.1 Capsicum annuum HOM05D000597 ORTHO05D004591 1.1e-09 67.0 75 50.7
SalBow6G2434 Salvia bowleyana HOM05D004059 ORTHO05D004591 1.1e-09 67.0 116 41.4
Cpa.g.sc61.16 Carica papaya HOM05D004059 ORTHO05D004591 1.4e-09 66.6 121 38.8
SalBow1G7755 Salvia bowleyana HOM05D004059 ORTHO05D004591 1.4e-09 66.6 107 43.0
THA.LOC104818114 Tarenaya hassleriana HOM05D004059 ORTHO05D004591 1.8e-09 66.2 65 55.4
Atru.chr7.1612 Acer truncatum HOM05D004059 ORTHO05D004591 2.4e-09 65.9 60 55.0
DCAR_011967 Daucus carota HOM05D004059 ORTHO05D004591 2.4e-09 65.9 123 40.7
Dinv42329 Davidia involucrata HOM05D004059 ORTHO05D004591 2.4e-09 65.9 48 72.9
Lsat_1_v5_gn_7_36701 Lactuca sativa HOM05D004059 ORTHO05D004591 2.4e-09 65.9 120 40.0
MBI01_g09949_MAGBIO Magnolia biondii HOM05D004059 ORTHO05D004591 2.4e-09 65.9 90 43.3
CARHR270700 Cardamine hirsuta HOM05D004059 ORTHO05D004591 6.9e-09 64.3 105 40.0
PSO210G1620 Papaver somniferum HOM05D004059 ORTHO05D004591 6.9e-09 64.3 95 41.1
Sp6g18670 Schrenkiella parvula HOM05D004059 ORTHO05D004591 6.9e-09 64.3 82 45.1
BcaC04g20035 Brassica carinata HOM05D004059 ORTHO05D004591 9.0e-09 63.9 82 47.6
C09p48620 Brassica napus HOM05D004059 ORTHO05D004591 9.0e-09 63.9 82 47.6
BolC9t57704H Brassica oleracea HOM05D004059 ORTHO05D004591 9.0e-09 63.9 82 47.6
BcaB08g36035 Brassica carinata HOM05D004059 ORTHO05D004591 1.2e-08 63.5 79 48.1
Gohir.A07G011900 Gossypium hirsutum HOM05D004059 ORTHO05D004591 1.2e-08 63.5 97 44.3
Gohir.D07G011700 Gossypium hirsutum HOM05D004059 ORTHO05D004591 1.2e-08 63.5 97 44.3
PSO210G4563 Papaver somniferum HOM05D004059 ORTHO05D004591 1.2e-08 63.5 95 42.1
AUR62033947 Chenopodium quinoa HOM05D004059 ORTHO05D004591 1.5e-08 63.2 128 38.3
AL8G32820 Arabidopsis lyrata HOM05D004059 ORTHO05D004591 2.0e-08 62.8 107 39.3
BcaB05g22300 Brassica carinata HOM05D004059 ORTHO05D004591 2.0e-08 62.8 104 40.4
BraA02t05954Z Brassica rapa HOM05D004059 ORTHO05D004591 2.0e-08 62.8 104 40.4
Carub.0008s1744 Capsella rubella HOM05D004059 ORTHO05D004591 2.6e-08 62.4 82 43.9
AUR62029052 Chenopodium quinoa HOM05D004059 ORTHO05D004591 3.4e-08 62.0 124 39.5
DCAR_031333 Daucus carota HOM05D004059 ORTHO05D004591 4.5e-08 61.6 123 39.0
Gorai.001G012400 Gossypium raimondii HOM05D004059 ORTHO05D004591 4.5e-08 61.6 63 52.4
Sed0013460 Sechium edule HOM05D004059 ORTHO05D004591 4.5e-08 61.6 83 45.8
THA.LOC104811746 Tarenaya hassleriana HOM05D004059 ORTHO05D004591 5.8e-08 61.2 119 37.0
unitig_749.g14229 Utricularia gibba HOM05D004059 ORTHO05D004591 5.8e-08 61.2 82 41.5
Aa31LG3G12850 Aethionema arabicum HOM05D004059 ORTHO05D004591 9.9e-08 60.5 94 44.7
BcaC03g14194 Brassica carinata HOM05D004059 ORTHO05D004591 9.9e-08 60.5 107 40.2
A02p08850 Brassica napus HOM05D004059 ORTHO05D004591 9.9e-08 60.5 107 39.3
C02p14760 Brassica napus HOM05D004059 ORTHO05D004591 9.9e-08 60.5 107 40.2
BolC2t07605H Brassica oleracea HOM05D004059 ORTHO05D004591 9.9e-08 60.5 107 40.2
Glyma.17G054000 Glycine max HOM05D004059 ORTHO05D004591 1.7e-07 59.7 136 35.3
AT5G56960 Arabidopsis thaliana HOM05D004059 ORTHO05D004591 2.2e-07 59.3 106 37.7
Sabra06G0117700 Salix brachista HOM05D004059 ORTHO05D004591 3.8e-07 58.5 120 38.3
HPP92_023832 Vanilla planifolia HOM05D004059 ORTHO05D004591 6.4e-07 57.8 112 34.8
Nitab4.5_0004679g0020 Nicotiana tabacum HOM05D000063 ORTHO05D282957 8.4e-07 57.4 68 54.4
ClCG11G001730 Citrullus lanatus HOM05D004059 ORTHO05D004591 1.1e-06 57.0 62 48.4
SGA_v2.0_scaffold23G10028 Striga asiatica HOM05D004059 ORTHO05D004591 2.4e-06 55.8 126 34.1
CsaV3_2G001440 Cucumis sativus L. HOM05D004059 ORTHO05D004591 5.5e-06 54.7 66 45.5
Gohir.D06G071950 Gossypium hirsutum HOM05D004059 ORTHO05D004591 9.3e-06 53.9 120 40.0


User provided reference genes

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