Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002824g0090 Nicotiana tabacum HOM05D004042 ORTHO05D004552 7.0e-241 837.0 471 100.0
Nitab4.5_0002642g0100 Nicotiana tabacum HOM05D004042 ORTHO05D004552 2.1e-189 666.0 459 86.5
PGSC0003DMG400000274 Solanum tuberosum HOM05D004042 ORTHO05D004552 2.9e-186 655.6 418 80.9
Solyc12g008970.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 1.9e-185 652.9 418 80.4
Sopen12g003900 Solanum pennellii HOM05D004042 ORTHO05D004552 2.4e-185 652.5 418 80.4
Peaxi162Scf00498g00448 Petunia axillaris HOM05D004042 ORTHO05D004552 1.9e-177 626.3 402 79.6
CAN.G57.12 Capsicum annuum HOM05D004042 ORTHO05D004552 1.2e-171 607.1 414 76.3
Solyc07g040740.3 Solanum lycopersicum HOM05D004042 ORTHO05D004552 2.9e-170 602.4 430 73.0
Sopen07g019480 Solanum pennellii HOM05D004042 ORTHO05D004552 5.5e-169 598.2 416 75.0
MSTRG.19492 Avicennia marina HOM05D004042 ORTHO05D004552 5.7e-166 588.2 413 72.2
Nitab4.5_0009216g0010 Nicotiana tabacum HOM05D004042 ORTHO05D004552 1.4e-164 583.6 471 67.9
Actinidia25240 Actinidia chinensis HOM05D004042 ORTHO05D004552 1.2e-163 580.5 407 73.0
Oeu051295.1 Olea europaea HOM05D004042 ORTHO05D004552 7.7e-163 577.8 419 70.9
Cc06_g11620 Coffea canephora HOM05D004042 ORTHO05D004552 2.2e-162 576.2 390 74.6
Ciclev10008048m.g Citrus clementina HOM05D004042 ORTHO05D004552 3.8e-162 575.5 391 72.6
Atru.chr7.1627 Acer truncatum HOM05D004042 ORTHO05D004552 5.0e-162 575.1 392 73.2
Haze_25938 Corylus avellana HOM05D004042 ORTHO05D004552 5.0e-162 575.1 407 71.3
Oeu054835.1 Olea europaea HOM05D004042 ORTHO05D004552 8.5e-162 574.3 425 70.4
TWI63G1034 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 4.2e-161 572.0 421 69.8
TAR624G0704 Trochodendron aralioides HOM05D004042 ORTHO05D004552 9.4e-161 570.9 441 68.0
Cfa003057 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.2e-160 570.5 407 70.5
Aqoxy7G01162 Aquilegia oxysepala HOM05D004042 ORTHO05D004552 1.6e-160 570.1 420 68.8
Migut.J00573 Erythranthe guttata HOM05D004042 ORTHO05D004552 1.6e-160 570.1 422 69.0
PSO063G3240 Papaver somniferum HOM05D004042 ORTHO05D004552 2.7e-160 569.3 390 72.3
Phvul.003G134900 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 6.1e-160 568.2 400 70.8
GSVIVG01015174001 Vitis vinifera HOM05D004042 ORTHO05D004552 7.9e-160 567.8 421 67.5
Glyma.13G106100 Glycine max HOM05D004042 ORTHO05D004552 3.0e-159 565.8 428 68.0
QL02p062121 Quercus lobata HOM05D004042 ORTHO05D004552 3.9e-159 565.5 414 69.6
HanXRQChr12g0354671 Helianthus annuus HOM05D004042 ORTHO05D004552 6.7e-159 564.7 425 68.2
CiPaw.04G147900 Carya illinoinensis HOM05D004042 ORTHO05D004552 4.3e-158 562.0 420 68.1
Medtr4g125980 Medicago truncatula HOM05D004042 ORTHO05D004552 5.7e-158 561.6 409 67.7
Glyma.17G053300 Glycine max HOM05D004042 ORTHO05D004552 7.4e-158 561.2 431 67.1
HanXRQChr10g0319461 Helianthus annuus HOM05D004042 ORTHO05D004552 1.7e-157 560.1 420 67.6
PSO832G2139 Papaver somniferum HOM05D004042 ORTHO05D004552 1.7e-157 560.1 389 71.7
Lj7C679G4 Lonicera japonica HOM05D004042 ORTHO05D004552 2.2e-157 559.7 413 70.7
Lj6g0011849 Lotus japonicus HOM05D004042 ORTHO05D004552 2.2e-157 559.7 425 66.8
Potri.018G066100 Populus trichocarpa HOM05D004042 ORTHO05D004552 4.8e-157 558.5 418 68.7
VMungo1215G0315 Vigna mungo HOM05D004042 ORTHO05D004552 6.3e-157 558.1 429 66.9
MD02G1082600 Malus domestica HOM05D004042 ORTHO05D004552 1.1e-156 557.4 427 67.4
TPR.G9438 Trifolium pratense HOM05D004042 ORTHO05D004552 1.4e-156 557.0 427 66.0
Lj4g0002498 Lotus japonicus HOM05D004042 ORTHO05D004552 1.8e-156 556.6 419 67.8
Prupe.7G206100 Prunus persica HOM05D004042 ORTHO05D004552 3.1e-156 555.8 427 65.8
MD15G1210700 Malus domestica HOM05D004042 ORTHO05D004552 4.1e-156 555.4 429 66.2
PGR142G2341 Punica granatum HOM05D004042 ORTHO05D004552 6.9e-156 554.7 418 68.2
Psat7g044040 Pisum sativum HOM05D004042 ORTHO05D004552 9.1e-156 554.3 401 69.1
Sc08g0008580 Simmondsia chinensis HOM05D004042 ORTHO05D004552 9.1e-156 554.3 414 68.1
Thecc.09G085400 Theobroma cacao HOM05D004042 ORTHO05D004552 1.2e-155 553.9 424 67.7
ECA234G2403 Erigeron canadensis HOM05D004042 ORTHO05D004552 7.7e-155 551.2 389 70.7
THA.LOC104814629 Tarenaya hassleriana HOM05D004042 ORTHO05D004552 2.9e-154 549.3 435 66.7
CAN.G1583.6 Capsicum annuum HOM05D004042 ORTHO05D004552 3.8e-154 548.9 335 81.5
CsaV3_2G001380 Cucumis sativus L. HOM05D004042 ORTHO05D004552 6.5e-154 548.1 425 65.9
CiPaw.03G212500 Carya illinoinensis HOM05D004042 ORTHO05D004552 8.5e-154 547.7 429 66.2
Dinv42339 Davidia involucrata HOM05D004042 ORTHO05D004552 8.5e-154 547.7 364 74.5
Psat1g132200 Pisum sativum HOM05D004042 ORTHO05D004552 8.5e-154 547.7 436 66.1
Potri.006G147600 Populus trichocarpa HOM05D004042 ORTHO05D004552 8.5e-154 547.7 438 63.9
TPR.G29533 Trifolium pratense HOM05D004042 ORTHO05D004552 8.5e-154 547.7 443 64.3
MELO3C004632.2 Cucumis melo HOM05D004042 ORTHO05D004552 1.4e-153 547.0 435 64.6
Manes.16G100000 Manihot esculenta HOM05D004042 ORTHO05D004552 1.4e-153 547.0 391 70.8
Nn6g35535 Nelumbo nucifera HOM05D004042 ORTHO05D004552 2.5e-153 546.2 427 64.9
TWI32G1194 Tripterygium wilfordii HOM05D004042 ORTHO05D004552 2.5e-153 546.2 421 66.7
ATR0789G051 Amborella trichopoda HOM05D004042 ORTHO05D004552 5.5e-153 545.0 432 63.4
Glyma.09G065300 Glycine max HOM05D004042 ORTHO05D004552 7.2e-153 544.7 390 69.5
Medtr2g039940 Medicago truncatula HOM05D004042 ORTHO05D004552 7.2e-153 544.7 414 67.4
Sed0015499 Sechium edule HOM05D004042 ORTHO05D004552 2.1e-152 543.1 426 65.5
Gorai.001G013100 Gossypium raimondii HOM05D004042 ORTHO05D004552 2.7e-152 542.7 421 66.3
ClCG11G001680 Citrullus lanatus HOM05D004042 ORTHO05D004552 3.6e-152 542.3 407 66.6
HanXRQChr03g0060291 Helianthus annuus HOM05D004042 ORTHO05D004552 3.6e-152 542.3 431 64.3
Phvul.009G230700 Phaseolus vulgaris HOM05D004042 ORTHO05D004552 3.6e-152 542.3 440 62.5
DCAR_028272 Daucus carota HOM05D004042 ORTHO05D004552 4.7e-152 542.0 420 65.2
Gohir.D07G012400 Gossypium hirsutum HOM05D004042 ORTHO05D004552 6.1e-152 541.6 421 66.0
AT2G19450 Arabidopsis thaliana HOM05D004042 ORTHO05D004552 3.0e-151 539.3 385 70.9
Rhsim05G0016600 Rhododendron simsii HOM05D004042 ORTHO05D004552 3.9e-151 538.9 458 64.6
CANSAT56G0725 Cannabis sativa HOM05D004042 ORTHO05D004552 5.1e-151 538.5 395 68.9
Gohir.A07G012600 Gossypium hirsutum HOM05D004042 ORTHO05D004552 6.7e-151 538.1 421 65.8
Lalb_Chr13g0299591 Lupinus albus HOM05D004042 ORTHO05D004552 6.7e-151 538.1 415 65.8
BcaC06g36576 Brassica carinata HOM05D004042 ORTHO05D004552 3.3e-150 535.8 386 69.4
AL3G48800 Arabidopsis lyrata HOM05D004042 ORTHO05D004552 4.4e-150 535.4 419 66.8
Thhalv10022645m.g Eutrema salsugineum HOM05D004042 ORTHO05D004552 7.4e-150 534.6 386 69.9
PSO210G6497 Papaver somniferum HOM05D004042 ORTHO05D004552 1.3e-149 533.9 420 66.0
CDE05G1317 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 2.8e-149 532.7 417 63.8
C07p02710 Brassica napus HOM05D004042 ORTHO05D004552 3.7e-149 532.3 418 65.6
BolC7t40671H Brassica oleracea HOM05D004042 ORTHO05D004552 3.7e-149 532.3 418 65.6
Sp3g32820 Schrenkiella parvula HOM05D004042 ORTHO05D004552 3.7e-149 532.3 386 69.4
A07p01320 Brassica napus HOM05D004042 ORTHO05D004552 4.8e-149 531.9 418 65.8
BraA07t27923Z Brassica rapa HOM05D004042 ORTHO05D004552 4.8e-149 531.9 418 65.8
Lalb_Chr08g0232371 Lupinus albus HOM05D004042 ORTHO05D004552 4.8e-149 531.9 430 63.7
PSO210G1704 Papaver somniferum HOM05D004042 ORTHO05D004552 4.8e-149 531.9 420 65.7
BcaB07g31608 Brassica carinata HOM05D004042 ORTHO05D004552 1.4e-148 530.4 386 69.7
RcHm_v2.0_Chr2g0093781 Rosa chinensis HOM05D004042 ORTHO05D004552 1.4e-148 530.4 451 62.7
BcaC04g22852 Brassica carinata HOM05D004042 ORTHO05D004552 2.4e-148 529.6 446 63.0
BolC9t54364H Brassica oleracea HOM05D004042 ORTHO05D004552 2.4e-148 529.6 446 63.0
CARHR109890 Cardamine hirsuta HOM05D004042 ORTHO05D004552 2.4e-148 529.6 411 66.9
Carub.0003s3373 Capsella rubella HOM05D004042 ORTHO05D004552 3.1e-148 529.3 420 66.0
A09p12360 Brassica napus HOM05D004042 ORTHO05D004552 4.1e-148 528.9 440 63.2
C09p14580 Brassica napus HOM05D004042 ORTHO05D004552 4.1e-148 528.9 442 62.9
BraA09t36880Z Brassica rapa HOM05D004042 ORTHO05D004552 4.1e-148 528.9 442 62.9
BcaB03g16730 Brassica carinata HOM05D004042 ORTHO05D004552 7.0e-148 528.1 418 65.1
vmacro17139 Vaccinium macrocarpon HOM05D004042 ORTHO05D004552 1.5e-147 526.9 539 55.7
FvH4_1g07910 Fragaria vesca HOM05D004042 ORTHO05D004552 3.4e-147 525.8 429 64.8
Os06g0563900 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 7.7e-147 524.6 387 67.2
Nitab4.5_0001519g0080 Nicotiana tabacum HOM05D004042 ORTHO05D004552 5.0e-146 521.9 445 65.8
HPP92_005224 Vanilla planifolia HOM05D004042 ORTHO05D004552 1.1e-145 520.8 396 66.4
Aa31LG8G16450 Aethionema arabicum HOM05D004042 ORTHO05D004552 3.2e-145 519.2 376 69.9
Dinv36786 Davidia involucrata HOM05D004042 ORTHO05D004552 1.2e-144 517.3 389 68.9
Zm00001eb277490 Zea mays HOM05D004042 ORTHO05D004552 1.6e-144 516.9 385 67.5
FAN23G0463 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.3e-143 513.1 420 64.8
FAN26G3195 Fragaria x ananassa HOM05D004042 ORTHO05D004552 6.7e-143 511.5 383 68.4
FAN26G0253 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.0e-142 510.0 383 68.1
FAN28G1686 Fragaria x ananassa HOM05D004042 ORTHO05D004552 3.3e-142 509.2 395 65.8
Duzib168G0739 Durio zibethinus HOM05D004042 ORTHO05D004552 1.3e-141 507.3 422 62.8
FAN19G1831 Fragaria x ananassa HOM05D004042 ORTHO05D004552 1.3e-141 507.3 433 62.8
Eucgr.C03419 Eucalyptus grandis HOM05D004042 ORTHO05D004552 1.7e-141 506.9 356 72.5
HPP92_003981 Vanilla planifolia HOM05D004042 ORTHO05D004552 3.7e-141 505.8 428 62.4
Lsat_1_v5_gn_5_143061 Lactuca sativa HOM05D004042 ORTHO05D004552 1.1e-140 504.2 419 63.0
SGA_v2.0_scaffold91G28060 Striga asiatica HOM05D004042 ORTHO05D004552 1.8e-140 503.4 388 67.5
TAR636G2477 Trochodendron aralioides HOM05D004042 ORTHO05D004552 3.1e-140 502.7 385 66.8
Oeu032802.1 Olea europaea HOM05D004042 ORTHO05D004552 4.1e-140 502.3 407 66.8
arahy.Tifrunner.gnm1.ann1.MYU01D Arachis hypogaea HOM05D004042 ORTHO05D004552 9.1e-140 501.1 471 57.5
SalBow6G0873 Salvia bowleyana HOM05D004042 ORTHO05D004552 9.1e-140 501.1 345 74.5
Peaxi162Scf00494g00077 Petunia axillaris HOM05D004042 ORTHO05D004552 7.7e-139 498.0 399 69.2
Hund25994 Selenicereus undatus HOM05D004042 ORTHO05D004552 1.2e-134 484.2 314 75.2
Sabra06G0116600 Salix brachista HOM05D004042 ORTHO05D004552 2.6e-134 483.0 332 71.7
Os05g0196800 Oryza sativa ssp. japonica HOM05D004042 ORTHO05D004552 5.7e-134 481.9 389 62.5
Sabra18G0058600 Salix brachista HOM05D004042 ORTHO05D004552 9.7e-134 481.1 354 70.6
Ca_21290_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 3.5e-131 472.6 336 71.4
arahy.Tifrunner.gnm1.ann1.MZM9C8 Arachis hypogaea HOM05D004042 ORTHO05D004552 3.8e-130 469.2 483 54.5
AUR62029034 Chenopodium quinoa HOM05D004042 ORTHO05D004552 1.1e-129 467.6 350 69.1
arahy.Tifrunner.gnm1.ann1.W5L64F Arachis hypogaea HOM05D004042 ORTHO05D004552 2.7e-128 463.0 394 61.4
arahy.Tifrunner.gnm1.ann1.5W0QMQ Arachis hypogaea HOM05D004042 ORTHO05D004552 6.1e-128 461.8 415 59.3
unitig_8.g4318 Utricularia gibba HOM05D004042 ORTHO05D004552 2.3e-127 459.9 412 60.0
Ca_13125_v3 Cicer arietinum L. HOM05D004042 ORTHO05D004552 1.5e-126 457.2 369 66.1
Manes.03G036000 Manihot esculenta HOM05D004042 ORTHO05D004552 2.8e-125 453.0 344 66.3
Pp3c15_23830 Physcomitrium patens HOM05D004042 ORTHO05D004552 4.1e-124 449.1 428 55.1
AagrBONN_evm.TU.Sc2ySwM_117.1233 Anthoceros agrestis HOM05D004042 ORTHO05D004552 4.5e-123 445.7 390 58.2
Mapoly0012s0121 Marchantia polymorpha HOM05D004042 ORTHO05D004552 7.7e-123 444.9 421 53.4
Lalb_Chr11g0074521 Lupinus albus HOM05D004042 ORTHO05D004552 3.8e-122 442.6 366 63.9
SMO356G0470 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 4.7e-120 435.6 386 58.8
AagrBONN_evm.TU.Sc2ySwM_344.3248 Anthoceros agrestis HOM05D004042 ORTHO05D004552 8.0e-120 434.9 393 56.2
Pp3c9_24440 Physcomitrium patens HOM05D004042 ORTHO05D004552 1.8e-119 433.7 399 57.4
Zm00001eb284200 Zea mays HOM05D004042 ORTHO05D004552 6.8e-119 431.8 354 63.6
EL10Ac8g19178 Beta vulgaris HOM05D004042 ORTHO05D004552 1.5e-118 430.6 423 55.8
Hund06663 Selenicereus undatus HOM05D004042 ORTHO05D004552 1.8e-116 423.7 422 55.9
CDE05G1467 Ceratophyllum demersum HOM05D004042 ORTHO05D004552 5.2e-111 405.6 309 66.0
Sc18g0002260 Simmondsia chinensis HOM05D004042 ORTHO05D004552 1.2e-110 404.4 278 72.3
VMungo1309G0638 Vigna mungo HOM05D004042 ORTHO05D004552 3.4e-110 402.9 312 67.0
DCAR_011961 Daucus carota HOM05D004042 ORTHO05D004552 1.3e-109 401.0 334 60.8
AagrBONN_evm.TU.Sc2ySwM_344.1721 Anthoceros agrestis HOM05D004042 ORTHO05D004552 1.3e-101 374.4 318 59.4
CSS0045629 Camellia sinensis var. sinensis HOM05D004042 ORTHO05D004552 4.1e-100 369.4 437 51.7
Hma1.2p1_0672F.1_g201026 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 4.9e-85 319.3 189 78.8
PGSC0003DMG400032788 Solanum tuberosum HOM05D004042 ORTHO05D004552 6.0e-83 312.4 222 75.7
PRCOL_00002371 Prasinoderma coloniale HOM05D004042 ORTHO05D004552 4.2e-76 289.7 408 43.6
AUR62033935 Chenopodium quinoa HOM05D004042 ORTHO05D004552 5.8e-70 269.2 243 62.1
Hma1.2p1_0672F.1_g201023 Hydrangea macrophylla HOM05D004042 ORTHO05D004552 1.4e-63 248.1 155 76.8
Lj4C291G3 Lonicera japonica HOM05D004042 ORTHO05D004552 2.6e-62 243.8 286 52.4
COL.COLO4_18176 Corchorus olitorius HOM05D004042 ORTHO05D004552 3.2e-60 236.9 169 71.0
Cpa.g.sc737.3 Carica papaya HOM05D004042 ORTHO05D004552 1.2e-43 181.8 158 64.6
Haze_27058 Corylus avellana HOM05D004042 ORTHO05D004552 1.2e-38 165.2 371 30.2
Cre01.g045903 Chlamydomonas reinhardtii HOM05D004042 ORTHO05D004552 4.7e-35 153.3 136 54.4
Cpa.g.sc737.2 Carica papaya HOM05D004042 ORTHO05D004552 5.1e-34 149.8 114 62.3
Cfa021676 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.1e-33 148.7 458 29.3
SMO361G0462 Selaginella moellendorffii HOM05D004042 ORTHO05D004552 2.8e-32 144.1 162 47.5
FAN28G2747 Fragaria x ananassa HOM05D004042 ORTHO05D004552 2.0e-25 121.3 410 29.3
Peaxi162Scf00126g01028 Petunia axillaris HOM05D004042 ORTHO05D004552 1.6e-19 101.7 49 91.8
PGSC0003DMG400032789 Solanum tuberosum HOM05D004042 ORTHO05D004552 8.8e-18 95.9 52 86.5
PSO765G0232 Papaver somniferum HOM05D004042 ORTHO05D004552 4.1e-15 87.0 125 47.2
Cfa025900 Carpinus fangiana HOM05D004042 ORTHO05D123407 2.2e-13 81.3 197 29.9
Cfa024924 Carpinus fangiana HOM05D004042 ORTHO05D004552 1.8e-10 71.6 231 28.1
SEGI_28032 Sequoiadendron giganteum HOM05D004042 ORTHO05D004552 3.4e-09 67.4 63 49.2
Sabra18G0058500 Salix brachista HOM05D004042 ORTHO05D004552 1.7e-08 65.1 41 70.7
AUR62029035 Chenopodium quinoa HOM05D004042 ORTHO05D004552 2.8e-08 64.3 38 71.1
PSO339G6631 Papaver somniferum HOM05D002947 ORTHO05D037275 1.4e-07 62.0 51 62.7
PSO266G0038 Papaver somniferum HOM05D002947 ORTHO05D037275 7.0e-07 59.7 49 63.3


User provided reference genes

Program Settings