Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002815g0090 Nicotiana tabacum HOM05D004451 ORTHO05D005177 3.7e-155 551.6 295 100.0
Nitab4.5_0005392g0030 Nicotiana tabacum HOM05D004451 ORTHO05D005177 1.4e-146 523.1 290 96.9
PGSC0003DMG400025865 Solanum tuberosum HOM05D004451 ORTHO05D005177 1.8e-117 426.4 284 82.0
Solyc01g107640.3 Solanum lycopersicum HOM05D004451 ORTHO05D005177 7.5e-116 421.0 284 79.9
Sopen01g049830 Solanum pennellii HOM05D004451 ORTHO05D005177 1.3e-115 420.2 284 80.3
Peaxi162Scf00016g02324 Petunia axillaris HOM05D004451 ORTHO05D005177 1.9e-106 389.8 286 76.9
CSS0044080 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 1.2e-100 370.5 294 74.1
CSS0017890 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 3.7e-99 365.5 298 71.8
Cc02_g19230 Coffea canephora HOM05D004451 ORTHO05D005177 8.3e-99 364.4 293 73.0
ECA234G3549 Erigeron canadensis HOM05D004451 ORTHO05D005177 3.5e-97 359.0 289 69.6
Ciclev10029016m.g Citrus clementina HOM05D004451 ORTHO05D005177 3.0e-96 355.9 289 71.6
vmacro19448 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 3.0e-96 355.9 297 68.7
CANSAT25G2876 Cannabis sativa HOM05D004451 ORTHO05D005177 8.6e-96 354.4 298 71.5
Prupe.8G134600 Prunus persica HOM05D004451 ORTHO05D005177 1.1e-95 354.0 294 68.4
CANSAT25G0591 Cannabis sativa HOM05D004451 ORTHO05D005177 2.5e-95 352.8 298 71.1
Nn1g04705 Nelumbo nucifera HOM05D004451 ORTHO05D005177 2.5e-95 352.8 292 69.2
Actinidia17478 Actinidia chinensis HOM05D004451 ORTHO05D005177 3.3e-95 352.4 304 68.8
MD05G1088600 Malus domestica HOM05D004451 ORTHO05D005177 3.3e-95 352.4 293 68.6
Thecc.02G107400 Theobroma cacao HOM05D004451 ORTHO05D005177 3.3e-95 352.4 293 70.6
Cpa.g.sc106.89 Carica papaya HOM05D004451 ORTHO05D005177 4.3e-95 352.1 294 70.7
Atru.chr5.2587 Acer truncatum HOM05D004451 ORTHO05D005177 5.6e-95 351.7 289 71.6
Duzib248G1610 Durio zibethinus HOM05D004451 ORTHO05D005177 5.6e-95 351.7 292 69.9
Actinidia00412 Actinidia chinensis HOM05D004451 ORTHO05D005177 7.3e-95 351.3 302 68.9
arahy.Tifrunner.gnm1.ann1.S5NBXN Arachis hypogaea HOM05D004451 ORTHO05D005177 2.1e-94 349.7 296 70.3
Oeu010397.1 Olea europaea HOM05D004451 ORTHO05D005177 2.1e-94 349.7 291 71.1
TAR381G0562 Trochodendron aralioides HOM05D004451 ORTHO05D005177 2.1e-94 349.7 297 69.7
Potri.009G096300 Populus trichocarpa HOM05D004451 ORTHO05D005177 2.8e-94 349.4 298 69.1
arahy.Tifrunner.gnm1.ann1.BMM90D Arachis hypogaea HOM05D004451 ORTHO05D005177 6.2e-94 348.2 295 69.2
Oeu018597.1 Olea europaea HOM05D004451 ORTHO05D005177 6.2e-94 348.2 288 70.1
SGA_v2.0_scaffold32G13039 Striga asiatica HOM05D004451 ORTHO05D005177 6.2e-94 348.2 299 66.6
GSVIVG01003161001 Vitis vinifera HOM05D004451 ORTHO05D005177 1.1e-93 347.4 296 68.9
MSTRG.20184 Avicennia marina HOM05D004451 ORTHO05D005177 1.4e-93 347.1 290 69.3
Potri.001G300500 Populus trichocarpa HOM05D004451 ORTHO05D005177 1.4e-93 347.1 300 68.3
SalBow6G6827 Salvia bowleyana HOM05D004451 ORTHO05D005177 1.8e-93 346.7 293 70.3
Lj5g0008999 Lotus japonicus HOM05D004451 ORTHO05D005177 3.1e-93 345.9 293 68.6
Phvul.007G040300 Phaseolus vulgaris HOM05D004451 ORTHO05D005177 6.8e-93 344.7 292 68.2
Hma1.2p1_0796F.1_g219180 Hydrangea macrophylla HOM05D004451 ORTHO05D005177 8.9e-93 344.4 232 81.9
CSS0019678 Camellia sinensis var. sinensis HOM05D004451 ORTHO05D005177 1.2e-92 344.0 305 68.9
Manes.07G069100 Manihot esculenta HOM05D004451 ORTHO05D005177 1.2e-92 344.0 284 69.7
Haze_10166 Corylus avellana HOM05D004451 ORTHO05D005177 2.6e-92 342.8 294 68.7
MSTRG.16716 Avicennia marina HOM05D004451 ORTHO05D005177 3.4e-92 342.4 291 67.4
COL.COLO4_32599 Corchorus olitorius HOM05D004451 ORTHO05D005177 5.8e-92 341.7 293 67.9
Migut.B00385 Erythranthe guttata HOM05D004451 ORTHO05D005177 5.8e-92 341.7 294 67.7
Actinidia05493 Actinidia chinensis HOM05D004451 ORTHO05D005177 7.5e-92 341.3 282 68.1
QL11p033916 Quercus lobata HOM05D004451 ORTHO05D005177 7.5e-92 341.3 292 68.2
Gohir.A13G043700 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.3e-91 340.5 290 67.9
TWI79G0876 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 1.3e-91 340.5 295 66.1
Gohir.D13G042200 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.7e-91 340.1 290 67.9
PGR142G3187 Punica granatum HOM05D004451 ORTHO05D005177 1.7e-91 340.1 294 68.7
Glyma.20G129100 Glycine max HOM05D004451 ORTHO05D005177 2.2e-91 339.7 291 68.7
Gorai.013G047100 Gossypium raimondii HOM05D004451 ORTHO05D005177 2.2e-91 339.7 290 67.9
Manes.10G076300 Manihot esculenta HOM05D004451 ORTHO05D005177 2.2e-91 339.7 302 65.9
Rhsim05G0088400 Rhododendron simsii HOM05D004451 ORTHO05D005177 2.2e-91 339.7 297 67.7
TAR628G0195 Trochodendron aralioides HOM05D004451 ORTHO05D005177 2.2e-91 339.7 292 67.1
Glyma.10G261800 Glycine max HOM05D004451 ORTHO05D005177 4.9e-91 338.6 297 66.7
Cfa004574 Carpinus fangiana HOM05D004451 ORTHO05D005177 6.4e-91 338.2 297 68.4
RcHm_v2.0_Chr6g0255371 Rosa chinensis HOM05D004451 ORTHO05D005177 6.4e-91 338.2 287 68.3
TWI31G0226 Tripterygium wilfordii HOM05D004451 ORTHO05D005177 6.4e-91 338.2 301 66.1
VMungo0720G2723 Vigna mungo HOM05D004451 ORTHO05D005177 2.4e-90 336.3 284 69.4
Gorai.005G235200 Gossypium raimondii HOM05D004451 ORTHO05D005177 3.2e-90 335.9 296 66.9
MD10G1096700 Malus domestica HOM05D004451 ORTHO05D005177 3.2e-90 335.9 292 66.4
Psat6g219200 Pisum sativum HOM05D004451 ORTHO05D005177 3.2e-90 335.9 288 67.4
Lj9C321G12 Lonicera japonica HOM05D004451 ORTHO05D005177 7.1e-90 334.7 207 85.5
Duzib132G0413 Durio zibethinus HOM05D004451 ORTHO05D005177 9.2e-90 334.3 297 66.7
CsaV3_7G008120 Cucumis sativus L. HOM05D004451 ORTHO05D005177 3.5e-89 332.4 297 66.0
ClCG02G006310 Citrullus lanatus HOM05D004451 ORTHO05D005177 4.6e-89 332.0 310 63.9
Medtr1g107450 Medicago truncatula HOM05D004451 ORTHO05D005177 4.6e-89 332.0 291 68.0
Gohir.A03G186500 Gossypium hirsutum HOM05D004451 ORTHO05D005177 7.8e-89 331.3 293 65.5
Gohir.D02G207300 Gossypium hirsutum HOM05D004451 ORTHO05D005177 1.0e-88 330.9 297 67.0
HanXRQChr16g0514851 Helianthus annuus HOM05D004451 ORTHO05D005177 1.3e-88 330.5 285 67.7
Lalb_Chr02g0145321 Lupinus albus HOM05D004451 ORTHO05D005177 1.7e-88 330.1 293 66.2
PSO210G2671 Papaver somniferum HOM05D004451 ORTHO05D005177 2.3e-88 329.7 294 66.0
Hund06320 Selenicereus undatus HOM05D004451 ORTHO05D005177 3.9e-88 328.9 295 64.7
Aqoxy5G01146 Aquilegia oxysepala HOM05D004451 ORTHO05D005177 5.1e-88 328.6 290 67.2
MELO3C018494.2 Cucumis melo HOM05D004451 ORTHO05D005177 6.6e-88 328.2 215 80.9
Ca_11078_v3 Cicer arietinum L. HOM05D004451 ORTHO05D005177 1.1e-87 327.4 291 66.0
CiPaw.05G011200 Carya illinoinensis HOM05D004451 ORTHO05D005177 1.9e-87 326.6 288 67.4
CiPaw.06G169600 Carya illinoinensis HOM05D004451 ORTHO05D005177 1.9e-87 326.6 291 67.7
FAN27G3473 Fragaria x ananassa HOM05D004451 ORTHO05D005177 1.9e-87 326.6 286 66.8
PSO170G0588 Papaver somniferum HOM05D004451 ORTHO05D005177 2.5e-87 326.2 292 66.4
AUR62039084 Chenopodium quinoa HOM05D004451 ORTHO05D005177 3.3e-87 325.9 290 66.6
FvH4_2g05240 Fragaria vesca HOM05D004451 ORTHO05D005177 7.3e-87 324.7 286 66.1
FAN20G1574 Fragaria x ananassa HOM05D004451 ORTHO05D005177 9.5e-87 324.3 289 67.8
Nn5g30419 Nelumbo nucifera HOM05D004451 ORTHO05D005177 1.2e-86 323.9 293 65.2
Lalb_Chr06g0165471 Lupinus albus HOM05D004451 ORTHO05D005177 2.1e-86 323.2 217 78.8
Sed0013348 Sechium edule HOM05D004451 ORTHO05D005177 2.1e-86 323.2 292 64.4
Sed0001090 Sechium edule HOM05D004451 ORTHO05D005177 2.8e-86 322.8 251 73.7
AUR62010302 Chenopodium quinoa HOM05D004451 ORTHO05D005177 6.2e-86 321.6 298 64.1
Lsat_1_v5_gn_5_114881 Lactuca sativa HOM05D004451 ORTHO05D005177 2.4e-85 319.7 278 69.1
FAN15G2242 Fragaria x ananassa HOM05D004451 ORTHO05D005177 4.0e-85 318.9 298 63.4
Sabra09G0074000 Salix brachista HOM05D004451 ORTHO05D005177 1.5e-84 317.0 352 58.0
FAN24G2858 Fragaria x ananassa HOM05D004451 ORTHO05D005177 2.0e-84 316.6 286 64.7
SGA_v2.0_scaffold225G43078 Striga asiatica HOM05D004451 ORTHO05D005177 2.0e-84 316.6 288 64.9
EL10Ac9g22281 Beta vulgaris HOM05D004451 ORTHO05D005177 2.6e-84 316.2 287 63.8
Hund00148 Selenicereus undatus HOM05D004451 ORTHO05D005177 4.9e-83 312.0 293 62.8
Ah.01g018220 Amaranthus hybridus HOM05D004451 ORTHO05D005177 1.4e-82 310.5 304 61.8
Aa31LG8G13140 Aethionema arabicum HOM05D004451 ORTHO05D005177 3.2e-82 309.3 250 70.8
C07p08470 Brassica napus HOM05D004451 ORTHO05D005177 9.2e-82 307.8 293 62.8
BolC7t41261H Brassica oleracea HOM05D004451 ORTHO05D005177 9.2e-82 307.8 293 62.8
Sabra16G0188700 Salix brachista HOM05D004451 ORTHO05D005177 9.2e-82 307.8 363 55.4
AL3G47010 Arabidopsis lyrata HOM05D004451 ORTHO05D005177 1.6e-81 307.0 301 61.1
Carub.0003s2912 Capsella rubella HOM05D004451 ORTHO05D005177 2.1e-81 306.6 295 62.4
HanXRQChr10g0292341 Helianthus annuus HOM05D004451 ORTHO05D005177 2.7e-81 306.2 287 64.5
BcaB03g16278 Brassica carinata HOM05D004451 ORTHO05D005177 3.5e-81 305.8 250 70.0
Sp3g28570 Schrenkiella parvula HOM05D004451 ORTHO05D005177 3.5e-81 305.8 285 64.2
BcaB07g31794 Brassica carinata HOM05D004451 ORTHO05D005177 6.0e-81 305.1 217 76.5
BcaC06g36051 Brassica carinata HOM05D004451 ORTHO05D005177 7.8e-81 304.7 299 61.9
A09p10690 Brassica napus HOM05D004451 ORTHO05D005177 7.8e-81 304.7 252 69.8
CARHR105660 Cardamine hirsuta HOM05D004451 ORTHO05D005177 1.0e-80 304.3 299 62.5
BcaB08g34587 Brassica carinata HOM05D004451 ORTHO05D005177 1.3e-80 303.9 296 61.8
A07p05320 Brassica napus HOM05D004451 ORTHO05D005177 1.3e-80 303.9 265 66.8
BraA07t28325Z Brassica rapa HOM05D004451 ORTHO05D005177 1.3e-80 303.9 265 66.8
Thhalv10022775m.g Eutrema salsugineum HOM05D004451 ORTHO05D005177 1.7e-80 303.5 306 62.4
THA.LOC104819557 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 1.7e-80 303.5 302 61.6
BolC9t54158H Brassica oleracea HOM05D004451 ORTHO05D005177 2.3e-80 303.1 217 76.5
Dinv15761 Davidia involucrata HOM05D004451 ORTHO05D005177 6.6e-80 301.6 272 66.2
AT2G15290 Arabidopsis thaliana HOM05D004451 ORTHO05D005177 8.7e-80 301.2 301 61.1
DCAR_001641 Daucus carota HOM05D004451 ORTHO05D005177 8.7e-80 301.2 195 80.5
Eucgr.E02954 Eucalyptus grandis HOM05D004451 ORTHO05D005177 1.1e-79 300.8 264 65.2
C09p12690 Brassica napus HOM05D004451 ORTHO05D005177 3.3e-79 299.3 217 76.0
CDE04G0259 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 5.6e-79 298.5 198 79.8
vmacro19524 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 1.2e-78 297.4 351 54.1
Rhsim11G0160300 Rhododendron simsii HOM05D004451 ORTHO05D005177 2.4e-77 293.1 269 66.5
THA.LOC104807244 Tarenaya hassleriana HOM05D004451 ORTHO05D005177 3.4e-76 289.3 283 62.5
HPP92_004770 Vanilla planifolia HOM05D004451 ORTHO05D005177 1.3e-75 287.3 291 56.4
Sc17g0003020 Simmondsia chinensis HOM05D004451 ORTHO05D005177 3.8e-75 285.8 260 68.1
BcaC06g31580 Brassica carinata HOM05D004451 ORTHO05D005177 1.4e-74 283.9 193 80.3
unitig_22.g5194 Utricularia gibba HOM05D004451 ORTHO05D005177 6.0e-73 278.5 285 58.2
Os02g0187600 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 3.0e-72 276.2 279 59.1
Os06g0638100 Oryza sativa ssp. japonica HOM05D004451 ORTHO05D005177 3.9e-72 275.8 199 73.4
Zm00001eb206410 Zea mays HOM05D004451 ORTHO05D005177 2.5e-71 273.1 181 78.5
ECA240G4367 Erigeron canadensis HOM05D004451 ORTHO05D005177 7.3e-71 271.6 272 61.8
SEGI_03021 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 2.1e-70 270.0 227 66.1
Mapoly0049s0087 Marchantia polymorpha HOM05D004451 ORTHO05D005177 1.1e-69 267.7 283 56.9
BraA09t36712Z Brassica rapa HOM05D004451 ORTHO05D005177 1.8e-69 266.9 316 55.4
Pp3c10_9500 Physcomitrium patens HOM05D004451 ORTHO05D005177 6.9e-69 265.0 203 70.0
Pp3c27_4260 Physcomitrium patens HOM05D004451 ORTHO05D005177 1.2e-68 264.2 195 72.3
Zm00001eb387350 Zea mays HOM05D004451 ORTHO05D005177 4.5e-68 262.3 275 55.3
DCAR_021989 Daucus carota HOM05D004451 ORTHO05D005177 5.8e-68 261.9 254 63.0
Pp3c1_21740 Physcomitrium patens HOM05D004451 ORTHO05D005177 9.9e-68 261.2 305 53.4
ATR0691G207 Amborella trichopoda HOM05D004451 ORTHO05D005177 1.6e-65 253.8 211 66.4
AagrBONN_evm.TU.Sc2ySwM_344.1281 Anthoceros agrestis HOM05D004451 ORTHO05D005177 7.9e-65 251.5 310 50.3
BcaC04g23051 Brassica carinata HOM05D005496 ORTHO05D006677 7.9e-65 251.5 179 76.5
unitig_8.g3679 Utricularia gibba HOM05D004451 ORTHO05D005177 4.0e-61 239.2 191 67.5
CBR_g39267 Chara braunii HOM05D004451 ORTHO05D005177 3.1e-53 213.0 203 59.1
SMO118G0560 Selaginella moellendorffii HOM05D004451 ORTHO05D005177 5.3e-53 212.2 181 62.4
CDE06G1648 Ceratophyllum demersum HOM05D004451 ORTHO05D005177 2.6e-52 209.9 207 58.9
vmacro02006 Vaccinium macrocarpon HOM05D004451 ORTHO05D005177 1.0e-48 198.0 192 62.0
SHI05289 Sapria himalayana HOM05D004451 ORTHO05D005177 1.6e-46 190.7 193 57.0
TAR381G0937 Trochodendron aralioides HOM05D004451 ORTHO05D005177 2.2e-38 163.7 107 85.0
Zm00001eb234680 Zea mays HOM05D004451 ORTHO05D005177 1.8e-37 160.6 302 39.1
CAN.G1231.10 Capsicum annuum HOM05D004451 ORTHO05D005177 3.4e-36 156.4 89 85.4
SEGI_11302 Sequoiadendron giganteum HOM05D004451 ORTHO05D005177 2.0e-31 140.6 121 62.0
MCO10G127 Micromonas commoda HOM05D004451 ORTHO05D005177 7.4e-31 138.7 183 44.8
HPP92_008279 Vanilla planifolia HOM05D004451 ORTHO05D005177 1.2e-25 121.3 119 58.8
CAN.G3385.1 Capsicum annuum HOM05D004451 ORTHO05D005177 2.1e-25 120.6 77 85.7
Cre10.g454734 Chlamydomonas reinhardtii HOM05D000133 ORTHO05D005177 2.6e-23 113.6 205 38.0
PRCOL_00004645 Prasinoderma coloniale HOM05D004451 ORTHO05D005177 2.2e-22 110.5 197 41.6
CBR_g28861 Chara braunii HOM05D004451 ORTHO05D009492 4.1e-21 106.3 87 62.1
HanXRQChr01g0018911 Helianthus annuus HOM05D004451 ORTHO05D005177 1.6e-20 104.4 105 54.3
HanXRQChr17g0567381 Helianthus annuus HOM05D004451 ORTHO05D005177 4.5e-20 102.8 105 53.3
Cre11.g467759 Chlamydomonas reinhardtii HOM05D027551 ORTHO05D005177 9.7e-15 85.1 171 33.3
HanXRQChr05g0151971 Helianthus annuus HOM05D002664 ORTHO05D002974 1.0e-11 75.1 60 66.7
VMungo0251G3374 Vigna mungo HOM05D004451 ORTHO05D005177 9.8e-07 58.5 47 61.7


User provided reference genes

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