Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002812g0030 Nicotiana tabacum HOM05D005519 ORTHO05D006423 2.7e-78 295.4 167 100.0
Nitab4.5_0000099g0170 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.4e-63 246.5 171 88.9
Sopen04g027910 Solanum pennellii HOM05D005519 ORTHO05D006423 1.1e-58 230.3 176 83.0
PGSC0003DMG400025068 Solanum tuberosum HOM05D005519 ORTHO05D006423 1.4e-58 229.9 176 83.0
Peaxi162Scf00360g00028 Petunia axillaris HOM05D005519 ORTHO05D006423 2.4e-58 229.2 167 84.4
CAN.G495.8 Capsicum annuum HOM05D005519 ORTHO05D006423 3.1e-58 228.8 169 84.6
Solyc04g071930.4 Solanum lycopersicum HOM05D005519 ORTHO05D006423 2.6e-57 225.7 176 82.4
Peaxi162Scf00160g01746 Petunia axillaris HOM05D005519 ORTHO05D006423 3.0e-53 212.2 171 77.8
Nitab4.5_0001103g0040 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.1e-52 210.3 172 74.4
PGSC0003DMG400018793 Solanum tuberosum HOM05D005519 ORTHO05D006423 4.3e-52 208.4 168 72.0
Cc10_g15180 Coffea canephora HOM05D005519 ORTHO05D006423 1.3e-51 206.8 189 70.4
Nitab4.5_0000872g0010 Nicotiana tabacum HOM05D005519 ORTHO05D006423 1.3e-51 206.8 174 77.0
MSTRG.25301 Avicennia marina HOM05D005519 ORTHO05D006423 3.7e-51 205.3 179 76.0
Solyc12g056620.2 Solanum lycopersicum HOM05D005519 ORTHO05D006423 4.0e-50 201.8 167 68.9
Sopen12g029280 Solanum pennellii HOM05D005519 ORTHO05D006423 1.2e-49 200.3 167 68.3
Glyma.10G222100 Glycine max HOM05D005519 ORTHO05D006423 1.7e-48 196.4 183 64.5
CAN.G26.8 Capsicum annuum HOM05D005519 ORTHO05D006423 2.2e-48 196.1 172 73.3
Hma1.2p1_0358F.1_g134710 Hydrangea macrophylla HOM05D005519 ORTHO05D006423 8.4e-48 194.1 183 66.1
Glyma.20G169500 Glycine max HOM05D005519 ORTHO05D006423 1.1e-47 193.7 183 63.9
Migut.C00964 Erythranthe guttata HOM05D005519 ORTHO05D006423 1.4e-47 193.4 171 72.5
Migut.N03201 Erythranthe guttata HOM05D005519 ORTHO05D006423 4.2e-47 191.8 168 75.0
Duzib116G0927 Durio zibethinus HOM05D005519 ORTHO05D006423 7.1e-47 191.0 175 64.0
Lj7A382T71 Lonicera japonica HOM05D005519 ORTHO05D006423 7.1e-47 191.0 170 71.8
Gohir.A05G246000 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.6e-46 189.9 188 66.0
Gohir.D05G247500 Gossypium hirsutum HOM05D005519 ORTHO05D006423 2.1e-46 189.5 188 68.1
DCAR_001160 Daucus carota HOM05D005519 ORTHO05D006423 3.5e-46 188.7 170 65.3
CiPaw.15G012900 Carya illinoinensis HOM05D005519 ORTHO05D006423 4.6e-46 188.3 175 66.3
Gorai.009G258300 Gossypium raimondii HOM05D005519 ORTHO05D006423 6.0e-46 188.0 188 67.6
Dinv25895 Davidia involucrata HOM05D005519 ORTHO05D006423 7.9e-46 187.6 186 70.4
Sabra02G0051900 Salix brachista HOM05D005519 ORTHO05D006423 7.9e-46 187.6 191 67.0
Cfa018287 Carpinus fangiana HOM05D005519 ORTHO05D006423 1.0e-45 187.2 143 77.6
Glyma.02G079400 Glycine max HOM05D005519 ORTHO05D006423 1.8e-45 186.4 184 62.0
Lsat_1_v5_gn_6_101660 Lactuca sativa HOM05D005519 ORTHO05D006423 1.8e-45 186.4 177 69.5
Manes.18G094400 Manihot esculenta HOM05D005519 ORTHO05D006423 2.3e-45 186.0 191 64.9
Phvul.004G091300 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 2.3e-45 186.0 184 59.2
Potri.002G065000 Populus trichocarpa HOM05D005519 ORTHO05D006423 3.0e-45 185.7 191 66.0
unitig_26.g9895 Utricularia gibba HOM05D005519 ORTHO05D006423 3.0e-45 185.7 167 70.7
Phvul.007G083000 Phaseolus vulgaris HOM05D005519 ORTHO05D006423 6.7e-45 184.5 178 60.7
VMungo0720G0436 Vigna mungo HOM05D005519 ORTHO05D006423 8.7e-45 184.1 178 63.5
Lsat_1_v5_gn_9_42101 Lactuca sativa HOM05D005519 ORTHO05D006423 2.5e-44 182.6 163 72.4
Manes.02G182800 Manihot esculenta HOM05D005519 ORTHO05D006423 2.5e-44 182.6 191 68.1
Potri.005G196100 Populus trichocarpa HOM05D005519 ORTHO05D006423 3.3e-44 182.2 191 66.0
PGR042G3808 Punica granatum HOM05D005519 ORTHO05D006423 3.3e-44 182.2 190 66.3
Ca_10667_v3 Cicer arietinum L. HOM05D005519 ORTHO05D006423 5.7e-44 181.4 180 60.0
Glyma.16G163800 Glycine max HOM05D005519 ORTHO05D006423 5.7e-44 181.4 185 57.8
Haze_17800 Corylus avellana HOM05D005519 ORTHO05D006423 7.4e-44 181.0 140 80.7
Thecc.08G158600 Theobroma cacao HOM05D005519 ORTHO05D006423 7.4e-44 181.0 186 65.1
FvH4_2g13070 Fragaria vesca HOM05D005519 ORTHO05D006423 9.7e-44 180.6 191 65.4
TAR381G0167 Trochodendron aralioides HOM05D005519 ORTHO05D006423 1.3e-43 180.3 177 63.8
VMungo0464G1678 Vigna mungo HOM05D005519 ORTHO05D006423 1.3e-43 180.3 183 67.8
Lalb_Chr03g0035541 Lupinus albus HOM05D005519 ORTHO05D006423 1.6e-43 179.9 182 59.3
Duzib093G1843 Durio zibethinus HOM05D005519 ORTHO05D006423 2.2e-43 179.5 182 64.3
vmacro01488 Vaccinium macrocarpon HOM05D005519 ORTHO05D006423 2.2e-43 179.5 178 68.0
MD05G1032800 Malus domestica HOM05D005519 ORTHO05D006423 3.7e-43 178.7 196 63.8
Lj2g0026694 Lotus japonicus HOM05D005519 ORTHO05D006423 4.8e-43 178.3 165 70.9
THA.LOC104825113 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 4.8e-43 178.3 180 65.6
Rhsim11G0087200 Rhododendron simsii HOM05D005519 ORTHO05D006423 6.3e-43 177.9 185 66.5
TWI32G0061 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 1.1e-42 177.2 181 60.8
Psat6g190880 Pisum sativum HOM05D005519 ORTHO05D006423 1.4e-42 176.8 178 61.2
SGA_v2.0_scaffold108G30869 Striga asiatica HOM05D005519 ORTHO05D006423 1.8e-42 176.4 173 69.4
arahy.Tifrunner.gnm1.ann1.8F5AL7 Arachis hypogaea HOM05D005519 ORTHO05D006423 2.4e-42 176.0 195 62.1
RcHm_v2.0_Chr6g0274331 Rosa chinensis HOM05D005519 ORTHO05D006423 2.4e-42 176.0 189 65.6
A08p08390 Brassica napus HOM05D005519 ORTHO05D006423 3.1e-42 175.6 172 70.9
BraA08t32855Z Brassica rapa HOM05D005519 ORTHO05D006423 3.1e-42 175.6 172 70.9
arahy.Tifrunner.gnm1.ann1.SKG6R6 Arachis hypogaea HOM05D005519 ORTHO05D006423 4.1e-42 175.3 195 61.5
CSS0002205 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 4.1e-42 175.3 134 81.3
Lalb_Chr19g0130091 Lupinus albus HOM05D005519 ORTHO05D006423 4.1e-42 175.3 178 59.6
Prupe.8G039900 Prunus persica HOM05D005519 ORTHO05D006423 5.3e-42 174.9 192 60.9
TWI34G0476 Tripterygium wilfordii HOM05D005519 ORTHO05D006423 9.0e-42 174.1 183 63.9
AL1G48440 Arabidopsis lyrata HOM05D005519 ORTHO05D006423 1.5e-41 173.3 179 67.0
BcaB04g17909 Brassica carinata HOM05D005519 ORTHO05D006423 2.0e-41 172.9 174 67.2
Cpa.g.sc49.79 Carica papaya HOM05D005519 ORTHO05D006423 2.0e-41 172.9 187 63.6
CiPaw.16G008800 Carya illinoinensis HOM05D005519 ORTHO05D006423 2.0e-41 172.9 182 60.4
Aa31LG6G8220 Aethionema arabicum HOM05D005519 ORTHO05D006423 2.6e-41 172.6 173 68.8
AT1G34000 Arabidopsis thaliana HOM05D005519 ORTHO05D006423 2.6e-41 172.6 177 68.9
Sabra05G0149500 Salix brachista HOM05D005519 ORTHO05D006423 2.6e-41 172.6 191 64.9
QL02p037831 Quercus lobata HOM05D005519 ORTHO05D006423 3.4e-41 172.2 188 58.5
THA.LOC104806763 Tarenaya hassleriana HOM05D005519 ORTHO05D006423 3.4e-41 172.2 187 62.6
TPR.G17016 Trifolium pratense HOM05D005519 ORTHO05D006423 3.4e-41 172.2 178 66.9
Lj4A703G50 Lonicera japonica HOM05D005519 ORTHO05D006423 4.5e-41 171.8 143 75.5
Nn5g28816 Nelumbo nucifera HOM05D005519 ORTHO05D006423 5.9e-41 171.4 191 65.4
BolC6t36346H Brassica oleracea HOM05D005519 ORTHO05D006423 1.0e-40 170.6 169 66.9
CANSAT25G1666 Cannabis sativa HOM05D005519 ORTHO05D006423 1.0e-40 170.6 201 54.7
FAN24G1125 Fragaria x ananassa HOM05D003947 ORTHO05D004614 1.0e-40 170.6 189 61.4
Gohir.D02G068600 Gossypium hirsutum HOM05D005519 ORTHO05D006423 1.0e-40 170.6 173 63.6
ClCG08G008840 Citrullus lanatus HOM05D005519 ORTHO05D006423 1.3e-40 170.2 145 77.9
BolC8t47881H Brassica oleracea HOM05D005519 ORTHO05D006423 1.7e-40 169.9 173 68.8
Lj5g0019555 Lotus japonicus HOM05D005519 ORTHO05D006423 1.7e-40 169.9 183 63.9
BcaC08g43825 Brassica carinata HOM05D005519 ORTHO05D006423 2.2e-40 169.5 169 66.3
C06p12090 Brassica napus HOM05D005519 ORTHO05D006423 2.2e-40 169.5 170 68.2
Medtr1g098280 Medicago truncatula HOM05D005519 ORTHO05D006423 2.2e-40 169.5 177 62.1
Sed0015682 Sechium edule HOM05D005519 ORTHO05D006423 2.2e-40 169.5 136 75.7
FAN15G1092 Fragaria x ananassa HOM05D003947 ORTHO05D004614 2.9e-40 169.1 151 71.5
MD10G1033800 Malus domestica HOM05D005519 ORTHO05D006423 2.9e-40 169.1 195 62.6
Carub.0001s3208 Capsella rubella HOM05D005519 ORTHO05D006423 3.8e-40 168.7 180 66.7
Thhalv10008704m.g Eutrema salsugineum HOM05D005519 ORTHO05D006423 8.5e-40 167.5 181 67.4
Gorai.005G077500 Gossypium raimondii HOM05D005519 ORTHO05D006423 1.1e-39 167.2 173 64.7
BraA09t38789Z Brassica rapa HOM05D005519 ORTHO05D006423 1.4e-39 166.8 173 68.8
QL02p038173 Quercus lobata HOM05D005519 ORTHO05D006423 1.9e-39 166.4 191 61.8
A09p32470 Brassica napus HOM05D005519 ORTHO05D006423 2.5e-39 166.0 173 69.4
CARHR033380 Cardamine hirsuta HOM05D005519 ORTHO05D006423 2.5e-39 166.0 181 67.4
Ah.05g168160 Amaranthus hybridus HOM05D005519 ORTHO05D006423 7.2e-39 164.5 180 61.7
ECA246G0665 Erigeron canadensis HOM05D003947 ORTHO05D006423 7.2e-39 164.5 122 73.0
BcaB07g33022 Brassica carinata HOM05D005519 ORTHO05D006423 1.2e-38 163.7 174 67.8
Atru.chr13.2018 Acer truncatum HOM05D005519 ORTHO05D006423 2.1e-38 162.9 185 64.3
MBI04_g08940_MAGBIO Magnolia biondii HOM05D005519 ORTHO05D006423 2.7e-38 162.5 143 72.7
Sc26g0002910 Simmondsia chinensis HOM05D005519 ORTHO05D006423 3.6e-38 162.2 179 62.0
GSVIVG01034578001 Vitis vinifera HOM05D005519 ORTHO05D006423 3.6e-38 162.2 89 91.0
MSTRG.1105 Avicennia marina HOM05D000084 ORTHO05D006423 6.1e-38 161.4 155 67.7
CDE04G2354 Ceratophyllum demersum HOM05D005519 ORTHO05D006423 1.0e-37 160.6 180 58.9
CsaV3_6G005050 Cucumis sativus L. HOM05D005519 ORTHO05D006423 1.0e-37 160.6 188 63.3
Ciclev10002625m.g Citrus clementina HOM05D005519 ORTHO05D006423 1.4e-37 160.2 185 61.6
PSO541G5828 Papaver somniferum HOM05D005519 ORTHO05D006423 2.3e-37 159.5 189 51.3
FAN27G0467 Fragaria x ananassa HOM05D005519 ORTHO05D006423 1.5e-36 156.8 174 64.4
HanXRQChr11g0320251 Helianthus annuus HOM05D005519 ORTHO05D006423 2.5e-36 156.0 172 65.7
PSO675G0400 Papaver somniferum HOM05D005519 ORTHO05D006423 2.5e-36 156.0 190 55.8
ATR0580G316 Amborella trichopoda HOM05D005519 ORTHO05D006423 7.4e-36 154.5 175 60.0
HPP92_000679 Vanilla planifolia HOM05D005519 ORTHO05D006423 2.8e-35 152.5 188 50.0
Zm00001eb160790 Zea mays HOM05D005519 ORTHO05D006423 1.4e-34 150.2 187 51.9
AUR62026639 Chenopodium quinoa HOM05D003947 ORTHO05D004614 2.4e-34 149.4 87 83.9
Sp1g29260 Schrenkiella parvula HOM05D005519 ORTHO05D006423 5.3e-34 148.3 215 55.8
Zm00001eb357520 Zea mays HOM05D005519 ORTHO05D006423 1.2e-33 147.1 185 49.7
Nn1g06007 Nelumbo nucifera HOM05D005519 ORTHO05D006423 4.5e-33 145.2 170 61.8
Sed0018725 Sechium edule HOM05D005519 ORTHO05D006423 5.0e-32 141.7 155 55.5
AUR62034898 Chenopodium quinoa HOM05D005519 ORTHO05D006423 1.8e-29 133.3 75 86.7
Os01g0589800 Oryza sativa ssp. japonica HOM05D005519 ORTHO05D006423 2.3e-29 132.9 70 90.0
COL.COLO4_03361 Corchorus olitorius HOM05D005519 ORTHO05D006423 1.1e-28 130.6 69 85.5
Oeu051280.1 Olea europaea HOM05D005519 ORTHO05D006423 9.1e-26 120.9 146 64.4
AagrBONN_evm.TU.Sc2ySwM_117.629 Anthoceros agrestis HOM05D005519 ORTHO05D006423 5.0e-24 115.2 149 57.0
A05p24090 Brassica napus HOM05D011378 ORTHO05D006423 1.4e-23 113.6 67 82.1
BraA05t21288Z Brassica rapa HOM05D003947 ORTHO05D006423 2.5e-23 112.8 72 80.6
Dinv41044 Davidia involucrata HOM05D005519 ORTHO05D006423 1.2e-22 110.5 142 63.4
Mapoly0065s0010 Marchantia polymorpha HOM05D005519 ORTHO05D006423 1.6e-22 110.2 82 63.4
Actinidia17771 Actinidia chinensis HOM05D005519 ORTHO05D006423 3.0e-21 105.9 102 60.8
SMO139G0065 Selaginella moellendorffii HOM05D005519 ORTHO05D006423 7.4e-20 101.3 187 46.5
CBR_g32244 Chara braunii HOM05D005519 ORTHO05D006423 1.7e-19 100.1 80 60.0
Cre06.g251150 Chlamydomonas reinhardtii HOM05D005519 ORTHO05D006423 2.4e-18 96.3 82 57.3
MCO05G699 Micromonas commoda HOM05D005519 ORTHO05D006423 1.2e-17 94.0 80 53.8
MELO3C029825.2 Cucumis melo HOM05D005519 ORTHO05D006423 1.7e-16 90.1 107 67.3
Eucgr.L00901 Eucalyptus grandis HOM05D005519 ORTHO05D006423 2.2e-16 89.7 132 58.3
CSS0025090 Camellia sinensis var. sinensis HOM05D005519 ORTHO05D006423 2.9e-16 89.4 52 86.5
Hund30143 Selenicereus undatus HOM05D005519 ORTHO05D006423 8.0e-14 81.3 170 46.5
PRCOL_00003386 Prasinoderma coloniale HOM05D005519 ORTHO05D006423 4.1e-10 68.9 67 52.2
Pp3c1_8300 Physcomitrium patens HOM05D005519 ORTHO05D006423 2.5e-07 59.7 39 61.5
unitig_749.g13910 Utricularia gibba HOM05D005519 ORTHO05D006423 1.6e-06 57.0 112 40.2


User provided reference genes

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