Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002811g0020 Nicotiana tabacum HOM05D005028 ORTHO05D006028 1.4e-111 406.4 209 100.0
Nitab4.5_0000386g0020 Nicotiana tabacum HOM05D005028 ORTHO05D006028 6.3e-101 370.9 209 92.3
CAN.G116.15 Capsicum annuum HOM05D005028 ORTHO05D006028 1.3e-90 336.7 209 82.8
Solyc10g012400.3 Solanum lycopersicum HOM05D005028 ORTHO05D006028 1.1e-89 333.6 209 81.8
Sopen10g006230 Solanum pennellii HOM05D005028 ORTHO05D006028 1.5e-89 333.2 209 81.8
PGSC0003DMG400006503 Solanum tuberosum HOM05D005028 ORTHO05D006028 3.2e-89 332.0 209 81.8
Peaxi162Scf00008g02424 Petunia axillaris HOM05D005028 ORTHO05D006028 8.8e-87 323.9 210 81.4
Oeu052955.1 Olea europaea HOM05D005028 ORTHO05D006028 3.4e-70 268.9 198 71.7
Nitab4.5_0000583g0210 Nicotiana tabacum HOM05D005028 ORTHO05D006028 2.9e-69 265.8 197 68.0
Cc02_g38190 Coffea canephora HOM05D005028 ORTHO05D006028 1.1e-68 263.8 196 67.3
Dinv32494 Davidia involucrata HOM05D005028 ORTHO05D006028 4.1e-68 261.9 206 63.6
MSTRG.20842 Avicennia marina HOM05D005028 ORTHO05D006028 1.3e-66 256.9 205 65.9
TWI23G0157 Tripterygium wilfordii HOM05D005028 ORTHO05D006028 5.6e-65 251.5 194 63.9
Actinidia10042 Actinidia chinensis HOM05D005028 ORTHO05D006028 1.6e-64 250.0 195 64.6
ClCG05G001460 Citrullus lanatus HOM05D005028 ORTHO05D006028 2.8e-64 249.2 194 63.9
Nitab4.5_0006018g0040 Nicotiana tabacum HOM05D005028 ORTHO05D006028 2.8e-64 249.2 198 67.2
SGA_v2.0_scaffold95G28829 Striga asiatica HOM05D005028 ORTHO05D006028 2.8e-64 249.2 195 65.1
GSVIVG01026950001 Vitis vinifera HOM05D005028 ORTHO05D006028 4.0e-63 245.4 200 61.5
Manes.05G033100 Manihot esculenta HOM05D005028 ORTHO05D006028 5.2e-63 245.0 193 63.2
Hma1.2p1_0780F.1_g216740 Hydrangea macrophylla HOM05D005028 ORTHO05D006028 6.8e-63 244.6 196 63.3
MD01G1065300 Malus domestica HOM05D005028 ORTHO05D006028 2.0e-62 243.0 196 60.7
TAR374G1129 Trochodendron aralioides HOM05D005028 ORTHO05D006028 2.0e-62 243.0 188 62.2
Migut.B01770 Erythranthe guttata HOM05D005028 ORTHO05D006028 2.6e-62 242.7 183 67.8
Actinidia20894 Actinidia chinensis HOM05D005028 ORTHO05D006028 4.4e-62 241.9 196 62.8
Prupe.2G172500 Prunus persica HOM05D005028 ORTHO05D006028 1.3e-61 240.4 192 61.5
Atru.chr5.513 Acer truncatum HOM05D005028 ORTHO05D006028 2.9e-61 239.2 198 58.1
MELO3C006103.2 Cucumis melo HOM05D005028 ORTHO05D006028 3.7e-61 238.8 193 60.1
Lsat_1_v5_gn_4_35880 Lactuca sativa HOM05D005028 ORTHO05D006028 8.3e-61 237.7 208 59.1
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 1.1e-60 237.3 190 59.5
Lj7A510T39 Lonicera japonica HOM05D005028 ORTHO05D006028 1.9e-60 236.5 195 60.5
vmacro13267 Vaccinium macrocarpon HOM05D005028 ORTHO05D006028 2.4e-60 236.1 202 59.4
TAR375G0288 Trochodendron aralioides HOM05D005028 ORTHO05D006028 4.1e-60 235.3 208 56.7
PSO210G4593 Papaver somniferum HOM05D005028 ORTHO05D006028 9.2e-60 234.2 206 60.2
PSO832G0747 Papaver somniferum HOM05D005028 ORTHO05D006028 1.6e-59 233.4 205 60.5
Nn1g01568 Nelumbo nucifera HOM05D005028 ORTHO05D006028 2.1e-59 233.0 193 58.0
RcHm_v2.0_Chr1g0356151 Rosa chinensis HOM05D005028 ORTHO05D006028 3.5e-59 232.3 197 58.4
ECA234G2903 Erigeron canadensis HOM05D005028 ORTHO05D006028 4.6e-59 231.9 179 64.2
unitig_26.g9301 Utricularia gibba HOM05D000773 ORTHO05D006028 1.0e-58 230.7 189 62.4
MD07G1135200 Malus domestica HOM05D005028 ORTHO05D006028 1.7e-58 229.9 192 58.9
CiPaw.02G032200 Carya illinoinensis HOM05D005028 ORTHO05D006028 3.9e-58 228.8 198 58.6
QL04p053913 Quercus lobata HOM05D005028 ORTHO05D006028 5.1e-58 228.4 193 61.1
Cfa003905 Carpinus fangiana HOM05D005028 ORTHO05D006028 6.6e-58 228.0 203 56.2
Sed0007874 Sechium edule HOM05D005028 ORTHO05D006028 8.6e-58 227.6 176 61.4
CANSAT56G0390 Cannabis sativa HOM05D005028 ORTHO05D006028 1.9e-57 226.5 192 60.9
Haze_15525 Corylus avellana HOM05D005028 ORTHO05D006028 1.9e-57 226.5 198 57.1
DCAR_015106 Daucus carota HOM05D005028 ORTHO05D006028 2.5e-57 226.1 200 57.5
Peaxi162Scf00020g00731 Petunia axillaris HOM05D005028 ORTHO05D006028 2.5e-57 226.1 210 61.0
HanXRQChr16g0522391 Helianthus annuus HOM05D005028 ORTHO05D006028 2.8e-56 222.6 178 61.8
THA.LOC104802036 Tarenaya hassleriana HOM05D005028 ORTHO05D006028 8.1e-56 221.1 190 60.0
Potri.014G086200 Populus trichocarpa HOM05D005028 ORTHO05D006028 1.4e-55 220.3 192 56.8
Duzib138G1785 Durio zibethinus HOM05D005028 ORTHO05D006028 1.8e-55 219.9 197 56.9
Thecc.01G357500 Theobroma cacao HOM05D005028 ORTHO05D006028 1.8e-55 219.9 178 61.8
Solyc01g094780.4 Solanum lycopersicum HOM05D005028 ORTHO05D006028 3.1e-55 219.2 186 60.2
Ah.05g180490 Amaranthus hybridus HOM05D005028 ORTHO05D006028 4.0e-55 218.8 203 55.7
DCAR_007443 Daucus carota HOM05D005028 ORTHO05D006028 8.9e-55 217.6 191 56.5
arahy.Tifrunner.gnm1.ann1.C7F7IC Arachis hypogaea HOM05D005028 ORTHO05D006028 1.2e-54 217.2 199 55.3
Sabra14G0062500 Salix brachista HOM05D005028 ORTHO05D006028 2.0e-54 216.5 202 55.0
PGSC0003DMG400000176 Solanum tuberosum HOM05D005028 ORTHO05D006028 3.4e-54 215.7 186 61.8
arahy.Tifrunner.gnm1.ann1.US4SCG Arachis hypogaea HOM05D005028 ORTHO05D006028 7.5e-54 214.5 178 58.4
Cpa.g.sc11.21 Carica papaya HOM05D005028 ORTHO05D006028 7.5e-54 214.5 195 56.4
arahy.Tifrunner.gnm1.ann1.EZF1CG Arachis hypogaea HOM05D005028 ORTHO05D006028 9.9e-54 214.2 178 58.4
Gohir.D07G147300 Gossypium hirsutum HOM05D005028 ORTHO05D006028 2.2e-53 213.0 188 54.8
EL10Ac1g00399 Beta vulgaris HOM05D005028 ORTHO05D006028 2.9e-53 212.6 194 55.7
Glyma.18G234400 Glycine max HOM05D005028 ORTHO05D006028 2.9e-53 212.6 189 57.7
Haze_01381 Corylus avellana HOM05D005028 ORTHO05D006028 6.4e-53 211.5 172 60.5
VMungo1383G1301 Vigna mungo HOM05D005028 ORTHO05D006028 1.1e-52 210.7 195 53.8
Gohir.A07G141900 Gossypium hirsutum HOM05D005028 ORTHO05D006028 5.4e-52 208.4 188 54.3
Eucgr.E00119 Eucalyptus grandis HOM05D005028 ORTHO05D006028 7.1e-52 208.0 179 58.7
Lsat_1_v5_gn_7_4161 Lactuca sativa HOM05D005028 ORTHO05D006028 9.2e-52 207.6 190 55.3
Phvul.008G061400 Phaseolus vulgaris HOM05D005028 ORTHO05D006028 9.2e-52 207.6 195 53.8
FAN03G1762 Fragaria x ananassa HOM05D005028 ORTHO05D006028 1.2e-51 207.2 195 52.3
Glyma.09G258300 Glycine max HOM05D005028 ORTHO05D006028 1.6e-51 206.8 189 56.6
MBI18_g02833_MAGBIO Magnolia biondii HOM05D005028 ORTHO05D006028 1.6e-51 206.8 207 52.2
Ciclev10022241m.g Citrus clementina HOM05D005028 ORTHO05D006028 2.1e-51 206.5 199 51.8
FvH4_7g14630 Fragaria vesca HOM05D005028 ORTHO05D006028 2.1e-51 206.5 195 51.8
FAN06G2873 Fragaria x ananassa HOM05D005028 ORTHO05D006028 2.1e-51 206.5 195 51.8
Lsat_1_v5_gn_7_18681 Lactuca sativa HOM05D005028 ORTHO05D006028 2.7e-51 206.1 182 56.6
FAN06G0569 Fragaria x ananassa HOM05D005028 ORTHO05D006028 4.6e-51 205.3 195 51.3
PGR042G1182 Punica granatum HOM05D005028 ORTHO05D006028 4.6e-51 205.3 190 57.4
Sc23g0002800 Simmondsia chinensis HOM05D005028 ORTHO05D006028 4.6e-51 205.3 191 51.8
FAN10G3452 Fragaria x ananassa HOM05D005028 ORTHO05D006028 7.8e-51 204.5 195 51.8
FAN10G4091 Fragaria x ananassa HOM05D005028 ORTHO05D006028 1.0e-50 204.1 195 51.8
AUR62004377 Chenopodium quinoa HOM05D005028 ORTHO05D006028 1.3e-50 203.8 193 54.9
AUR62022583 Chenopodium quinoa HOM05D005028 ORTHO05D006028 1.3e-50 203.8 157 61.1
Rhsim07G0013700 Rhododendron simsii HOM05D005028 ORTHO05D006028 1.3e-50 203.8 181 58.6
THA.LOC104817298 Tarenaya hassleriana HOM05D005028 ORTHO05D006028 1.7e-50 203.4 206 52.4
SalBow3G2695 Salvia bowleyana HOM05D005028 ORTHO05D006028 3.0e-50 202.6 183 58.5
Lalb_Chr04g0253811 Lupinus albus HOM05D005028 ORTHO05D006028 3.9e-50 202.2 201 50.7
Lj1g0018179 Lotus japonicus HOM05D005028 ORTHO05D006028 8.6e-50 201.1 197 49.7
FAN01G1655 Fragaria x ananassa HOM05D005028 ORTHO05D006028 3.3e-49 199.1 195 50.3
HanXRQChr06g0170181 Helianthus annuus HOM05D005028 ORTHO05D006028 3.3e-49 199.1 188 51.6
TPR.G37810 Trifolium pratense HOM05D005028 ORTHO05D006028 3.3e-49 199.1 197 51.3
Gorai.001G168500 Gossypium raimondii HOM05D005028 ORTHO05D006028 1.6e-48 196.8 219 47.0
AL4G45230 Arabidopsis lyrata HOM05D005028 ORTHO05D006028 6.2e-48 194.9 190 55.3
QL04p053899 Quercus lobata HOM05D005028 ORTHO05D006028 6.2e-48 194.9 199 50.8
Ca_07933_v3 Cicer arietinum L. HOM05D005028 ORTHO05D006028 1.4e-47 193.7 199 49.7
A03p25430 Brassica napus HOM05D005028 ORTHO05D006028 1.8e-47 193.4 198 52.5
Thhalv10001635m.g Eutrema salsugineum HOM05D005028 ORTHO05D006028 2.4e-47 193.0 194 53.6
ATR0680G399 Amborella trichopoda HOM05D005028 ORTHO05D006028 3.1e-47 192.6 170 56.5
Medtr7g077890 Medicago truncatula HOM05D005028 ORTHO05D006028 3.1e-47 192.6 197 50.3
Psat3g107720 Pisum sativum HOM05D005028 ORTHO05D006028 4.0e-47 192.2 203 48.8
HPP92_025966 Vanilla planifolia HOM05D005028 ORTHO05D006028 5.2e-47 191.8 179 53.6
CDE09G1157 Ceratophyllum demersum HOM05D005028 ORTHO05D006028 7.6e-46 188.0 193 50.8
AT2G46000 Arabidopsis thaliana HOM05D005028 ORTHO05D006028 9.9e-46 187.6 199 52.8
Carub.0004s2870 Capsella rubella HOM05D005028 ORTHO05D006028 2.9e-45 186.0 194 52.1
CARHR141270 Cardamine hirsuta HOM05D005028 ORTHO05D006028 2.9e-45 186.0 193 53.4
BolC3t15383H Brassica oleracea HOM05D005028 ORTHO05D006028 8.4e-45 184.5 206 49.5
Aa31LG1G27410 Aethionema arabicum HOM05D005028 ORTHO05D006028 5.4e-44 181.8 194 51.0
SMO203G0053 Selaginella moellendorffii HOM05D005028 ORTHO05D006028 7.1e-44 181.4 160 54.4
C03p30330 Brassica napus HOM05D005028 ORTHO05D006028 1.6e-43 180.3 206 49.0
Sp4g28070 Schrenkiella parvula HOM05D005028 ORTHO05D006028 1.6e-43 180.3 191 51.8
C04p72030 Brassica napus HOM05D005028 ORTHO05D006028 2.1e-43 179.9 196 50.0
BolC4t28699H Brassica oleracea HOM05D005028 ORTHO05D006028 2.1e-43 179.9 196 50.0
A04p34210 Brassica napus HOM05D005028 ORTHO05D006028 1.7e-42 176.8 192 49.0
BraA04t18882Z Brassica rapa HOM05D005028 ORTHO05D006028 1.7e-42 176.8 192 49.0
Os03g0148300 Oryza sativa ssp. japonica HOM05D005028 ORTHO05D006028 1.7e-42 176.8 179 50.3
Aqoxy7G00275 Aquilegia oxysepala HOM05D005028 ORTHO05D006028 6.6e-42 174.9 191 47.1
C04p06920 Brassica napus HOM05D005028 ORTHO05D006028 1.9e-41 173.3 197 48.7
BolC4t22313H Brassica oleracea HOM05D005028 ORTHO05D006028 1.9e-41 173.3 197 48.7
AagrBONN_evm.TU.Sc2ySwM_228.1428 Anthoceros agrestis HOM05D005028 ORTHO05D006028 3.3e-41 172.6 159 54.1
COL.COLO4_12727 Corchorus olitorius HOM05D005028 ORTHO05D006028 3.3e-41 172.6 158 52.5
Zm00001eb003870 Zea mays HOM05D005028 ORTHO05D006028 4.3e-41 172.2 159 52.8
BcaC02g12158 Brassica carinata HOM05D005028 ORTHO05D006028 8.1e-40 167.9 197 46.7
A05p05990 Brassica napus HOM05D005028 ORTHO05D006028 8.1e-40 167.9 205 46.3
BraA05t19562Z Brassica rapa HOM05D005028 ORTHO05D006028 8.1e-40 167.9 205 46.3
Zm00001eb402990 Zea mays HOM05D005028 ORTHO05D006028 1.5e-38 163.7 185 47.0
BraA03t11762Z Brassica rapa HOM05D005028 ORTHO05D006028 7.6e-38 161.4 138 58.7
BcaC01g05100 Brassica carinata HOM05D005028 ORTHO05D006028 9.9e-38 161.0 143 56.6
Pp3c14_2680 Physcomitrium patens HOM05D005028 ORTHO05D006028 4.6e-35 152.1 187 47.6
Mapoly0023s0066 Marchantia polymorpha HOM05D005028 ORTHO05D006028 1.0e-34 151.0 187 44.9
Manes.01G255500 Manihot esculenta HOM05D005028 ORTHO05D006028 8.7e-34 147.9 187 45.5
HanXRQChr04g0121191 Helianthus annuus HOM05D005028 ORTHO05D006028 1.9e-33 146.7 157 49.7
SEGI_06430 Sequoiadendron giganteum HOM05D005028 ORTHO05D006028 9.6e-33 144.4 147 52.4
Ciclev10006561m.g Citrus clementina HOM05D005028 ORTHO05D006028 6.4e-29 131.7 122 50.8
RcHm_v2.0_Chr1g0356451 Rosa chinensis HOM05D005028 ORTHO05D006028 7.9e-27 124.8 96 59.4
A04p17020 Brassica napus HOM05D005028 ORTHO05D006028 1.3e-26 124.0 172 41.9
CANSAT25G0788 Cannabis sativa HOM05D005028 ORTHO05D006028 4.8e-24 115.5 86 65.1
BcaC02g07785 Brassica carinata HOM05D005028 ORTHO05D006028 7.6e-22 108.2 138 44.2
BraA08t32322Z Brassica rapa HOM05D005028 ORTHO05D006028 2.9e-21 106.3 85 57.6
BcaB01g03242 Brassica carinata HOM05D005028 ORTHO05D006028 3.8e-21 105.9 125 48.8
C09p26600 Brassica napus HOM05D005028 ORTHO05D006028 7.6e-14 81.6 122 41.8
CBR_g3867 Chara braunii HOM05D005028 ORTHO05D006028 1.3e-13 80.9 134 38.1
ECA236G3403 Erigeron canadensis HOM05D005028 ORTHO05D006028 1.3e-13 80.9 100 44.0
Cfa010782 Carpinus fangiana HOM05D005028 ORTHO05D006028 3.2e-12 76.3 57 59.6
BcaC02g08371 Brassica carinata HOM05D005028 ORTHO05D006028 7.1e-12 75.1 63 55.6
arahy.Tifrunner.gnm1.ann1.PAI5YG Arachis hypogaea HOM05D005028 ORTHO05D006028 1.8e-10 70.5 55 61.8
MCO07G199 Micromonas commoda HOM05D005028 ORTHO05D006028 1.6e-08 63.9 194 27.8
CBR_g38724 Chara braunii HOM05D002446 ORTHO05D002941 2.4e-07 60.1 131 33.6
Atru.chr3.1868 Acer truncatum HOM05D005028 ORTHO05D006028 4.5e-06 55.8 43 55.8
Atru.chr3.1882 Acer truncatum HOM05D005028 ORTHO05D006028 7.7e-06 55.1 42 57.1


User provided reference genes

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