Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002811g0010 Nicotiana tabacum HOM05D003837 ORTHO05D004751 2.8e-154 548.5 269 100.0
Nitab4.5_0000386g0040 Nicotiana tabacum HOM05D003837 ORTHO05D004751 1.0e-148 530.0 269 96.7
PGSC0003DMG400006508 Solanum tuberosum HOM05D003837 ORTHO05D004751 2.4e-145 518.8 269 94.1
Sopen10g006240 Solanum pennellii HOM05D003837 ORTHO05D004751 4.1e-145 518.1 269 94.1
Solyc10g012410.3 Solanum lycopersicum HOM05D003837 ORTHO05D004751 1.6e-144 516.2 269 93.7
CAN.G116.14 Capsicum annuum HOM05D003837 ORTHO05D004751 3.5e-144 515.0 269 93.7
Thecc.01G357600 Theobroma cacao HOM05D003837 ORTHO05D004751 7.5e-139 497.3 269 88.5
Duzib138G0194 Durio zibethinus HOM05D003837 ORTHO05D004751 9.8e-139 496.9 269 88.5
MSTRG.17276 Avicennia marina HOM05D003837 ORTHO05D004751 2.9e-138 495.4 269 88.1
Gorai.004G042000 Gossypium raimondii HOM05D003837 ORTHO05D004751 1.4e-137 493.0 269 87.7
Gohir.D08G043400 Gossypium hirsutum HOM05D003837 ORTHO05D004751 4.1e-137 491.5 269 87.4
Cc02_g38180 Coffea canephora HOM05D003837 ORTHO05D004751 9.2e-137 490.3 269 87.7
Gohir.A08G032500 Gossypium hirsutum HOM05D003837 ORTHO05D004751 9.2e-137 490.3 269 87.7
Oeu010619.1 Olea europaea HOM05D003837 ORTHO05D004751 1.3e-135 486.5 269 86.6
CiPaw.01G063000 Carya illinoinensis HOM05D003837 ORTHO05D004751 2.3e-135 485.7 269 85.5
SalBow3G2595 Salvia bowleyana HOM05D003837 ORTHO05D004751 5.0e-135 484.6 270 87.0
QL04p053649 Quercus lobata HOM05D003837 ORTHO05D004751 6.6e-135 484.2 268 85.8
Atru.chr5.511 Acer truncatum HOM05D003837 ORTHO05D004751 8.6e-135 483.8 269 84.4
Dinv43830 Davidia involucrata HOM05D003837 ORTHO05D004751 8.6e-135 483.8 269 85.9
Migut.B01769 Erythranthe guttata HOM05D003837 ORTHO05D004751 8.6e-135 483.8 269 86.2
arahy.Tifrunner.gnm1.ann1.8FQY9T Arachis hypogaea HOM05D003837 ORTHO05D004751 1.9e-134 482.6 269 85.1
arahy.Tifrunner.gnm1.ann1.LGM3J9 Arachis hypogaea HOM05D003837 ORTHO05D004751 3.3e-134 481.9 269 84.8
Potri.014G086100 Populus trichocarpa HOM05D003837 ORTHO05D004751 5.6e-134 481.1 269 85.9
Hma1.2p1_0780F.1_g216730 Hydrangea macrophylla HOM05D003837 ORTHO05D004751 9.5e-134 480.3 267 85.4
arahy.Tifrunner.gnm1.ann1.50MGD9 Arachis hypogaea HOM05D003837 ORTHO05D004751 1.2e-133 479.9 269 84.8
CANSAT56G1308 Cannabis sativa HOM05D003837 ORTHO05D004751 6.2e-133 477.6 269 84.4
TAR629G3438 Trochodendron aralioides HOM05D003837 ORTHO05D004751 1.0e-132 476.9 269 83.6
Manes.01G255600 Manihot esculenta HOM05D003837 ORTHO05D004751 1.8e-132 476.1 263 86.3
Sabra14G0062400 Salix brachista HOM05D003837 ORTHO05D004751 1.8e-132 476.1 269 84.8
Rhsim01G0163300 Rhododendron simsii HOM05D003837 ORTHO05D004751 4.0e-132 474.9 269 84.0
GSVIVG01026949001 Vitis vinifera HOM05D003837 ORTHO05D004751 4.0e-132 474.9 269 84.0
PGR042G3540 Punica granatum HOM05D003837 ORTHO05D004751 5.2e-132 474.6 270 84.8
Ah.05g180500 Amaranthus hybridus HOM05D003837 ORTHO05D004751 6.8e-132 474.2 271 83.0
Lj9A584G62 Lonicera japonica HOM05D003837 ORTHO05D004751 6.8e-132 474.2 267 84.6
vmacro21886 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 6.8e-132 474.2 269 83.6
vmacro23130 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 6.8e-132 474.2 269 83.6
arahy.Tifrunner.gnm1.ann1.MHF7VE Arachis hypogaea HOM05D003837 ORTHO05D004751 8.9e-132 473.8 269 83.6
AL4G45220 Arabidopsis lyrata HOM05D003837 ORTHO05D004751 1.5e-131 473.0 269 83.3
Migut.B01768 Erythranthe guttata HOM05D003837 ORTHO05D004751 1.5e-131 473.0 271 85.6
Glyma.18G234200 Glycine max HOM05D003837 ORTHO05D004751 2.6e-131 472.2 269 83.3
unitig_61.g26385 Utricularia gibba HOM05D003837 ORTHO05D004751 2.6e-131 472.2 267 84.3
AUR62004375 Chenopodium quinoa HOM05D003837 ORTHO05D004751 4.4e-131 471.5 271 83.0
MELO3C021202.2 Cucumis melo HOM05D003837 ORTHO05D004751 5.8e-131 471.1 270 84.4
MD01G1065200 Malus domestica HOM05D003837 ORTHO05D004751 5.8e-131 471.1 269 81.8
ECA236G1077 Erigeron canadensis HOM05D003837 ORTHO05D004751 9.8e-131 470.3 269 83.3
Rhsim01G0190400 Rhododendron simsii HOM05D003837 ORTHO05D004751 9.8e-131 470.3 269 83.3
EL10Ac1g00400 Beta vulgaris HOM05D003837 ORTHO05D004751 1.3e-130 469.9 274 82.8
Sp4g28060 Schrenkiella parvula HOM05D003837 ORTHO05D004751 1.3e-130 469.9 269 82.5
Lsat_1_v5_gn_7_4380 Lactuca sativa HOM05D003837 ORTHO05D004751 1.7e-130 469.5 266 82.7
AUR62022582 Chenopodium quinoa HOM05D003837 ORTHO05D004751 2.9e-130 468.8 271 82.3
MBI18_g02839_MAGBIO Magnolia biondii HOM05D003837 ORTHO05D004751 2.9e-130 468.8 269 81.4
Eucgr.E01551 Eucalyptus grandis HOM05D003837 ORTHO05D004751 3.7e-130 468.4 269 81.8
Thhalv10001586m.g Eutrema salsugineum HOM05D003837 ORTHO05D004751 3.7e-130 468.4 269 81.4
Psat3g107800 Pisum sativum HOM05D003837 ORTHO05D004751 3.7e-130 468.4 269 82.5
Sed0000473 Sechium edule HOM05D003837 ORTHO05D004751 3.7e-130 468.4 269 82.9
Medtr7g077870 Medicago truncatula HOM05D003837 ORTHO05D004751 4.9e-130 468.0 269 82.5
AT2G45990 Arabidopsis thaliana HOM05D003837 ORTHO05D004751 6.4e-130 467.6 269 82.2
Phvul.008G061600 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 6.4e-130 467.6 269 83.3
FAN10G2900 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.4e-129 466.5 269 81.4
FvH4_7g14620 Fragaria vesca HOM05D003837 ORTHO05D004751 3.2e-129 465.3 269 81.4
FAN06G1674 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.2e-129 465.3 269 81.4
Carub.0004s2869 Capsella rubella HOM05D003837 ORTHO05D004751 4.1e-129 464.9 269 81.8
RcHm_v2.0_Chr1g0356141 Rosa chinensis HOM05D003837 ORTHO05D004751 1.2e-128 463.4 269 81.4
Aa31LG1G27400 Aethionema arabicum HOM05D003837 ORTHO05D004751 2.7e-128 462.2 269 81.0
Haze_15524 Corylus avellana HOM05D003837 ORTHO05D004751 3.5e-128 461.8 306 75.8
FAN03G2321 Fragaria x ananassa HOM05D003837 ORTHO05D004751 7.8e-128 460.7 275 80.0
FAN10G2259 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.0e-127 460.3 275 79.6
FAN01G2145 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.7e-127 459.5 269 79.9
FAN06G4414 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.0e-127 458.8 275 79.6
FAN01G0904 Fragaria x ananassa HOM05D003837 ORTHO05D004751 5.0e-127 458.0 269 80.3
BcaC02g12159 Brassica carinata HOM05D003837 ORTHO05D004751 8.6e-127 457.2 270 81.1
BraA05t19561Z Brassica rapa HOM05D003837 ORTHO05D004751 2.5e-126 455.7 270 80.7
Ca_07930_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 3.3e-126 455.3 281 77.2
arahy.Tifrunner.gnm1.ann1.AX1MHW Arachis hypogaea HOM05D003837 ORTHO05D004751 4.3e-126 454.9 269 81.0
Lj1g0003798 Lotus japonicus HOM05D003837 ORTHO05D004751 5.6e-126 454.5 269 79.2
Prupe.2G172200 Prunus persica HOM05D003837 ORTHO05D004751 7.3e-126 454.1 269 81.4
CARHR141260 Cardamine hirsuta HOM05D003837 ORTHO05D004751 9.5e-126 453.8 269 79.9
Ciclev10021690m.g Citrus clementina HOM05D003837 ORTHO05D004751 9.5e-126 453.8 269 81.4
TWI14G0320 Tripterygium wilfordii HOM05D003837 ORTHO05D004751 1.2e-125 453.4 269 81.4
A05p05980 Brassica napus HOM05D003837 ORTHO05D004751 1.6e-125 453.0 270 80.4
CANSAT56G2444 Cannabis sativa HOM05D003837 ORTHO05D004751 3.6e-125 451.8 269 80.7
Ciclev10021689m.g Citrus clementina HOM05D003837 ORTHO05D004751 6.2e-125 451.1 269 79.2
arahy.Tifrunner.gnm1.ann1.1HB2SZ Arachis hypogaea HOM05D003837 ORTHO05D004751 8.1e-125 450.7 269 78.8
Medtr7g077880 Medicago truncatula HOM05D003837 ORTHO05D004751 8.1e-125 450.7 269 79.6
Lalb_Chr04g0253801 Lupinus albus HOM05D003837 ORTHO05D004751 1.8e-124 449.5 267 79.4
arahy.Tifrunner.gnm1.ann1.SJDP6S Arachis hypogaea HOM05D003837 ORTHO05D004751 3.1e-124 448.7 269 78.8
C04p06910 Brassica napus HOM05D003837 ORTHO05D004751 4.0e-124 448.4 270 79.6
DCAR_025196 Daucus carota HOM05D003837 ORTHO05D004751 4.0e-124 448.4 269 80.7
Peaxi162Scf00008g02421 Petunia axillaris HOM05D003837 ORTHO05D004751 4.0e-124 448.4 269 84.0
Psat3g107760 Pisum sativum HOM05D003837 ORTHO05D004751 5.2e-124 448.0 269 78.8
VMungo1383G2611 Vigna mungo HOM05D003837 ORTHO05D004751 5.2e-124 448.0 268 79.1
PSO017G1131 Papaver somniferum HOM05D003837 ORTHO05D004751 1.5e-123 446.4 269 76.6
Glyma.18G234300 Glycine max HOM05D003837 ORTHO05D004751 2.6e-123 445.7 269 78.1
TPR.G37852 Trifolium pratense HOM05D003837 ORTHO05D004751 2.6e-123 445.7 269 78.1
Lalb_Chr10g0095951 Lupinus albus HOM05D003837 ORTHO05D004751 1.3e-122 443.4 267 77.9
FvH4_7g14540 Fragaria vesca HOM05D003837 ORTHO05D004751 6.4e-122 441.0 269 78.8
Actinidia02836 Actinidia chinensis HOM05D003837 ORTHO05D004751 5.4e-121 438.0 275 78.9
BolC4t22312H Brassica oleracea HOM05D003837 ORTHO05D004751 5.4e-121 438.0 286 75.2
CsaV3_6G000640 Cucumis sativus L. HOM05D003837 ORTHO05D004751 5.4e-121 438.0 269 79.6
TPR.G37767 Trifolium pratense HOM05D003837 ORTHO05D004751 2.1e-120 436.0 269 77.7
PSO063G2236 Papaver somniferum HOM05D003837 ORTHO05D004751 2.7e-120 435.6 261 77.0
ClCG06G003610 Citrullus lanatus HOM05D003837 ORTHO05D004751 4.6e-120 434.9 269 79.2
Os07g0418000 Oryza sativa ssp. japonica HOM05D003837 ORTHO05D004751 2.3e-119 432.6 267 75.3
HPP92_025965 Vanilla planifolia HOM05D003837 ORTHO05D004751 2.3e-119 432.6 267 75.7
THA.LOC104802037 Tarenaya hassleriana HOM05D003837 ORTHO05D004751 6.6e-119 431.0 269 77.7
arahy.Tifrunner.gnm1.ann1.I86G4G Arachis hypogaea HOM05D003837 ORTHO05D004751 8.6e-119 430.6 244 84.0
Cfa003906 Carpinus fangiana HOM05D003837 ORTHO05D004751 1.5e-118 429.9 252 82.5
Phvul.008G061500 Phaseolus vulgaris HOM05D003837 ORTHO05D004751 1.5e-118 429.9 267 76.8
Ca_07931_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 5.6e-118 427.9 269 74.7
Zm00001eb094870 Zea mays HOM05D003837 ORTHO05D004751 7.3e-118 427.6 267 74.2
CDE05G2325 Ceratophyllum demersum HOM05D003837 ORTHO05D004751 6.2e-117 424.5 266 75.6
COL.COLO4_12726 Corchorus olitorius HOM05D003837 ORTHO05D004751 6.2e-117 424.5 269 78.8
HanXRQChr04g0121181 Helianthus annuus HOM05D003837 ORTHO05D004751 6.2e-117 424.5 269 75.5
FAN06G3658 Fragaria x ananassa HOM05D003837 ORTHO05D004751 8.1e-117 424.1 269 76.2
RcHm_v2.0_Chr1g0356101 Rosa chinensis HOM05D003837 ORTHO05D004751 8.1e-117 424.1 269 75.1
Cpa.g.sc11.20 Carica papaya HOM05D003837 ORTHO05D004751 5.2e-116 421.4 269 75.8
VMungo1383G0868 Vigna mungo HOM05D003837 ORTHO05D004751 6.8e-116 421.0 269 76.6
FAN06G0309 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.9e-114 415.6 269 74.7
Hund27264 Selenicereus undatus HOM05D003837 ORTHO05D004751 1.9e-113 412.9 269 74.0
SEGI_21942 Sequoiadendron giganteum HOM05D003837 ORTHO05D004751 1.6e-112 409.8 269 70.6
FAN06G3536 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.7e-112 409.1 276 70.7
FAN10G0266 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.5e-112 408.7 270 72.6
FAN10G3579 Fragaria x ananassa HOM05D003837 ORTHO05D004751 3.5e-112 408.7 270 72.6
FAN01G2925 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.0e-111 407.1 276 71.4
FAN16G2327 Fragaria x ananassa HOM05D003837 ORTHO05D004751 6.6e-111 404.4 271 70.8
Nn1g01565 Nelumbo nucifera HOM05D003837 ORTHO05D004751 8.6e-111 404.1 269 72.1
FvH4_3g44250 Fragaria vesca HOM05D003837 ORTHO05D004751 3.3e-110 402.1 271 70.5
FAN06G3952 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.3e-110 401.7 276 69.9
HanXRQChr04g0121171 Helianthus annuus HOM05D003837 ORTHO05D004751 4.3e-110 401.7 269 71.0
FAN11G2601 Fragaria x ananassa HOM05D003837 ORTHO05D004751 1.2e-109 400.2 271 70.1
ATR0680G377 Amborella trichopoda HOM05D003837 ORTHO05D004751 1.4e-108 396.7 235 78.3
AagrBONN_evm.TU.Sc2ySwM_228.2910 Anthoceros agrestis HOM05D003837 ORTHO05D004751 3.1e-108 395.6 270 68.9
Ca_07932_v3 Cicer arietinum L. HOM05D003837 ORTHO05D004751 3.1e-108 395.6 269 71.0
arahy.Tifrunner.gnm1.ann1.438NR4 Arachis hypogaea HOM05D003837 ORTHO05D004751 4.0e-108 395.2 272 73.2
AagrBONN_evm.TU.Sc2ySwM_228.5133 Anthoceros agrestis HOM05D003837 ORTHO05D004751 1.2e-107 393.7 269 68.8
SMO118G0280 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 1.7e-106 389.8 267 67.8
Pp3c11_2170 Physcomitrium patens HOM05D003837 ORTHO05D004751 2.2e-106 389.4 270 67.8
RcHm_v2.0_Chr1g0356011 Rosa chinensis HOM05D003837 ORTHO05D004751 2.9e-106 389.0 270 69.3
Atru.chr5.512 Acer truncatum HOM05D003837 ORTHO05D004751 1.1e-105 387.1 212 84.9
Mapoly0002s0196 Marchantia polymorpha HOM05D003837 ORTHO05D004751 4.2e-105 385.2 270 67.8
Lj1g0022323 Lotus japonicus HOM05D003837 ORTHO05D004751 2.7e-104 382.5 236 77.5
Pp3c23_10590 Physcomitrium patens HOM05D003837 ORTHO05D004751 6.0e-104 381.3 271 66.8
RcHm_v2.0_Chr1g0356041 Rosa chinensis HOM05D003837 ORTHO05D004751 6.0e-104 381.3 270 68.1
RcHm_v2.0_Chr1g0356051 Rosa chinensis HOM05D003837 ORTHO05D004751 2.5e-102 375.9 271 68.3
RcHm_v2.0_Chr1g0355961 Rosa chinensis HOM05D003837 ORTHO05D004751 2.1e-101 372.9 271 67.2
Pp3c24_7060 Physcomitrium patens HOM05D003837 ORTHO05D004751 3.9e-95 352.1 249 66.3
Actinidia02835 Actinidia chinensis HOM05D003837 ORTHO05D004751 6.7e-95 351.3 197 85.3
AUR62004376 Chenopodium quinoa HOM05D003837 ORTHO05D004751 2.5e-94 349.4 211 79.1
Glyma.09G258500 Glycine max HOM05D003837 ORTHO05D004751 2.6e-91 339.3 217 76.5
CBR_g30756 Chara braunii HOM05D003837 ORTHO05D004751 2.2e-90 336.3 295 58.3
Sc26g0000870 Simmondsia chinensis HOM05D003837 ORTHO05D004751 8.4e-90 334.3 187 84.0
FAN10G2608 Fragaria x ananassa HOM05D003837 ORTHO05D004751 2.4e-89 332.8 189 80.4
SMO118G0457 Selaginella moellendorffii HOM05D003837 ORTHO05D004751 2.1e-80 303.1 271 56.1
CSS0003015 Camellia sinensis var. sinensis HOM05D003837 ORTHO05D004751 2.7e-64 249.6 189 67.7
FvH4_7g14570 Fragaria vesca HOM05D003837 ORTHO05D004751 4.1e-60 235.7 143 79.0
FAN10G2382 Fragaria x ananassa HOM05D003837 ORTHO05D004751 4.1e-60 235.7 133 80.5
vmacro20932 Vaccinium macrocarpon HOM05D003837 ORTHO05D004751 1.2e-59 234.2 178 66.9
Cre06.g278117 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 3.0e-55 219.5 273 42.5
Glyma.09G258400 Glycine max HOM05D003837 ORTHO05D004751 3.3e-54 216.1 127 78.0
RcHm_v2.0_Chr1g0356441 Rosa chinensis HOM05D003837 ORTHO05D004751 3.5e-51 206.1 186 60.2
MCO05G263 Micromonas commoda HOM05D003837 ORTHO05D004751 1.3e-50 204.1 271 40.6
SGA_v2.0_scaffold95G28830 Striga asiatica HOM05D003837 ORTHO05D004751 6.7e-47 191.8 269 44.6
Cre13.g578900 Chlamydomonas reinhardtii HOM05D003837 ORTHO05D004751 2.1e-40 170.2 278 36.0
FvH4_7g14571 Fragaria vesca HOM05D003837 ORTHO05D004751 4.1e-36 156.0 88 83.0
MD09G1245400 Malus domestica HOM05D003837 ORTHO05D004751 5.9e-35 152.1 82 87.8
arahy.Tifrunner.gnm1.ann1.B43A3C Arachis hypogaea HOM05D003837 ORTHO05D004751 2.3e-34 150.2 129 63.6
Glyma.04G165300 Glycine max HOM05D003837 ORTHO05D004751 4.0e-31 139.4 109 66.1
MD09G1245300 Malus domestica HOM05D003837 ORTHO05D004751 2.2e-29 133.7 76 80.3
arahy.Tifrunner.gnm1.ann1.DBMD67 Arachis hypogaea HOM05D003837 ORTHO05D004751 2.9e-26 123.2 69 84.1
RcHm_v2.0_Chr1g0356021 Rosa chinensis HOM05D003837 ORTHO05D004751 2.3e-23 113.6 108 53.7
Actinidia37295 Actinidia chinensis HOM05D003837 ORTHO05D004751 8.9e-23 111.7 68 77.9
Ciclev10006592m.g Citrus clementina HOM05D003837 ORTHO05D033091 5.7e-22 109.0 67 68.7
Ciclev10013186m.g Citrus clementina HOM05D003837 ORTHO05D004751 4.7e-16 89.4 68 60.3
A06p08350 Brassica napus HOM05D003837 ORTHO05D099682 8.0e-16 88.6 65 64.6
AUR62043290 Chenopodium quinoa HOM05D008055 ORTHO05D009927 2.2e-13 80.5 60 60.0
A05p05950 Brassica napus HOM05D003837 ORTHO05D033091 3.7e-13 79.7 43 79.1
BraA05t19558Z Brassica rapa HOM05D003837 ORTHO05D033091 3.7e-13 79.7 43 79.1
BolC9t54120H Brassica oleracea HOM05D003837 ORTHO05D033622 6.4e-13 79.0 57 66.7
BolC7t40474H Brassica oleracea HOM05D003837 ORTHO05D033622 1.1e-12 78.2 57 64.9
C09p56440 Brassica napus HOM05D003837 ORTHO05D101394 2.5e-09 67.0 51 64.7
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 4.7e-08 62.8 40 67.5


User provided reference genes

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