Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002808g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 1.5e-153 546.2 287 100.0
Nitab4.5_0004555g0010 Nicotiana tabacum HOM05D006023 ORTHO05D007377 2.4e-106 389.4 223 92.4
Peaxi162Scf00184g00013 Petunia axillaris HOM05D006023 ORTHO05D007377 4.6e-86 322.0 223 77.6
Sopen08g025290 Solanum pennellii HOM05D006023 ORTHO05D007377 2.9e-80 302.8 213 77.0
PGSC0003DMG400027709 Solanum tuberosum HOM05D006023 ORTHO05D007377 2.9e-80 302.8 200 79.5
Sopen10g027320 Solanum pennellii HOM05D006023 ORTHO05D007377 6.0e-78 295.0 220 74.1
Cc08_g03000 Coffea canephora HOM05D006023 ORTHO05D007377 1.5e-68 263.8 207 68.6
SGA_v2.0_scaffold6G03147 Striga asiatica HOM05D006023 ORTHO05D007377 1.4e-66 257.3 205 64.4
CSS0050040 Camellia sinensis var. sinensis HOM05D006023 ORTHO05D007377 4.1e-66 255.8 190 70.0
Migut.F00744 Erythranthe guttata HOM05D006023 ORTHO05D007377 5.3e-66 255.4 204 65.7
Hma1.2p1_1379F.1_g279210 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 5.3e-66 255.4 206 63.6
CsaV3_6G000520 Cucumis sativus L. HOM05D006023 ORTHO05D007377 1.5e-65 253.8 191 69.1
MELO3C021213.2 Cucumis melo HOM05D006023 ORTHO05D007377 2.0e-65 253.4 219 62.6
Oeu006244.1 Olea europaea HOM05D006023 ORTHO05D007377 2.0e-65 253.4 206 66.0
Dinv28972 Davidia involucrata HOM05D006023 ORTHO05D007377 1.0e-64 251.1 196 66.3
ECA240G0359 Erigeron canadensis HOM05D006023 ORTHO05D007377 1.3e-64 250.8 194 69.6
Cfa012466 Carpinus fangiana HOM05D006023 ORTHO05D007377 2.2e-64 250.0 196 66.3
Ca_10583_v3 Cicer arietinum L. HOM05D006023 ORTHO05D007377 2.9e-64 249.6 205 65.4
Nn5g27684 Nelumbo nucifera HOM05D006023 ORTHO05D007377 8.5e-64 248.1 198 65.7
Actinidia14795 Actinidia chinensis HOM05D006023 ORTHO05D007377 5.5e-63 245.4 190 65.8
Lj2A236G57 Lonicera japonica HOM05D006023 ORTHO05D007377 7.2e-63 245.0 190 67.4
TWI81G0073 Tripterygium wilfordii HOM05D006023 ORTHO05D007377 9.4e-63 244.6 191 67.0
Lsat_1_v5_gn_6_80341 Lactuca sativa HOM05D006023 ORTHO05D007377 1.2e-62 244.2 212 62.7
BcaB05g21996 Brassica carinata HOM05D006023 ORTHO05D007377 1.6e-62 243.8 191 67.5
Eucgr.D02210 Eucalyptus grandis HOM05D006023 ORTHO05D007377 1.6e-62 243.8 190 66.3
TPR.G1759 Trifolium pratense HOM05D006023 ORTHO05D007377 2.1e-62 243.4 210 61.9
GSVIVG01013134001 Vitis vinifera HOM05D006023 ORTHO05D007377 2.1e-62 243.4 199 64.3
CiPaw.12G065700 Carya illinoinensis HOM05D006023 ORTHO05D007377 4.6e-62 242.3 196 65.3
Medtr1g095620 Medicago truncatula HOM05D006023 ORTHO05D007377 6.1e-62 241.9 202 63.9
C09p42690 Brassica napus HOM05D006023 ORTHO05D007377 7.9e-62 241.5 189 67.7
BolC9t57145H Brassica oleracea HOM05D006023 ORTHO05D007377 7.9e-62 241.5 189 67.7
Potri.003G093800 Populus trichocarpa HOM05D006023 ORTHO05D007377 7.9e-62 241.5 192 69.3
Sp6g15140 Schrenkiella parvula HOM05D006023 ORTHO05D007377 7.9e-62 241.5 198 65.7
AT5G52980 Arabidopsis thaliana HOM05D006023 ORTHO05D007377 1.4e-61 240.7 195 67.2
BraA02t06203Z Brassica rapa HOM05D006023 ORTHO05D007377 1.4e-61 240.7 193 66.3
Prupe.5G032500 Prunus persica HOM05D006023 ORTHO05D007377 1.4e-61 240.7 189 65.1
Actinidia09185 Actinidia chinensis HOM05D006023 ORTHO05D007377 1.8e-61 240.4 196 66.3
A02p11390 Brassica napus HOM05D006023 ORTHO05D007377 2.3e-61 240.0 193 66.3
arahy.Tifrunner.gnm1.ann1.7BP5M1 Arachis hypogaea HOM05D006023 ORTHO05D007377 3.0e-61 239.6 189 65.1
Lalb_Chr17g0341511 Lupinus albus HOM05D006023 ORTHO05D007377 3.0e-61 239.6 189 65.1
AL8G27520 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 3.9e-61 239.2 189 67.7
Thhalv10014686m.g Eutrema salsugineum HOM05D006023 ORTHO05D007377 3.9e-61 239.2 195 65.6
A10p10460 Brassica napus HOM05D006023 ORTHO05D007377 5.1e-61 238.8 191 66.5
C02p18900 Brassica napus HOM05D006023 ORTHO05D007377 5.1e-61 238.8 193 66.3
BolC2t08031H Brassica oleracea HOM05D006023 ORTHO05D007377 5.1e-61 238.8 193 66.3
Manes.02G087300 Manihot esculenta HOM05D006023 ORTHO05D007377 5.1e-61 238.8 196 64.8
Glyma.20G178200 Glycine max HOM05D006023 ORTHO05D007377 6.7e-61 238.4 195 63.6
arahy.Tifrunner.gnm1.ann1.NMD1RU Arachis hypogaea HOM05D006023 ORTHO05D007377 8.8e-61 238.0 189 65.1
arahy.Tifrunner.gnm1.ann1.T01SKW Arachis hypogaea HOM05D006023 ORTHO05D007377 8.8e-61 238.0 189 65.1
Glyma.10G212800 Glycine max HOM05D006023 ORTHO05D007377 8.8e-61 238.0 208 61.1
Gohir.D08G176200 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.5e-60 237.3 197 65.0
Gorai.004G184000 Gossypium raimondii HOM05D006023 ORTHO05D007377 1.5e-60 237.3 197 65.0
Ah.07g200580 Amaranthus hybridus HOM05D006023 ORTHO05D007377 2.0e-60 236.9 199 61.8
Lj5g0000896 Lotus japonicus HOM05D006023 ORTHO05D007377 2.0e-60 236.9 204 62.3
Hund11133 Selenicereus undatus HOM05D006023 ORTHO05D007377 2.0e-60 236.9 222 59.9
CANSAT21G1027 Cannabis sativa HOM05D006023 ORTHO05D007377 2.5e-60 236.5 188 64.9
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 3.3e-60 236.1 222 59.5
Gohir.A08G155600 Gossypium hirsutum HOM05D006023 ORTHO05D007377 4.3e-60 235.7 190 64.7
Carub.0008s1318 Capsella rubella HOM05D006023 ORTHO05D007377 5.7e-60 235.3 195 65.1
unitig_21.g20896 Utricularia gibba HOM05D006023 ORTHO05D007377 7.4e-60 235.0 187 64.7
Gohir.A06G181300 Gossypium hirsutum HOM05D006023 ORTHO05D007377 1.3e-59 234.2 197 64.5
Phvul.007G092700 Phaseolus vulgaris HOM05D006023 ORTHO05D007377 1.3e-59 234.2 213 61.0
BcaC03g14468 Brassica carinata HOM05D006023 ORTHO05D007377 2.2e-59 233.4 193 65.8
FAN18G1789 Fragaria x ananassa HOM05D006023 ORTHO05D007377 2.2e-59 233.4 191 64.4
Gorai.010G220500 Gossypium raimondii HOM05D006023 ORTHO05D007377 2.2e-59 233.4 196 61.7
Sed0006289 Sechium edule HOM05D006023 ORTHO05D007377 2.2e-59 233.4 196 63.3
Sc01g0007360 Simmondsia chinensis HOM05D006023 ORTHO05D007377 2.2e-59 233.4 204 62.3
FvH4_5g22440 Fragaria vesca HOM05D006023 ORTHO05D007377 3.7e-59 232.6 191 64.4
FAN04G1629 Fragaria x ananassa HOM05D006023 ORTHO05D007377 3.7e-59 232.6 191 63.9
Gohir.D06G188100 Gossypium hirsutum HOM05D006023 ORTHO05D007377 3.7e-59 232.6 197 62.9
BraA10t43129Z Brassica rapa HOM05D006023 ORTHO05D007377 4.8e-59 232.3 183 66.7
PGR031G2123 Punica granatum HOM05D006023 ORTHO05D007377 4.8e-59 232.3 189 65.6
Atru.chr6.1650 Acer truncatum HOM05D006023 ORTHO05D007377 6.3e-59 231.9 190 66.8
AL8G27580 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 6.3e-59 231.9 189 66.1
FAN08G2226 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.4e-58 230.7 191 63.4
FAN13G0319 Fragaria x ananassa HOM05D006023 ORTHO05D007377 1.8e-58 230.3 191 63.4
RcHm_v2.0_Chr7g0210231 Rosa chinensis HOM05D006023 ORTHO05D007377 1.8e-58 230.3 195 63.1
TAR375G0242 Trochodendron aralioides HOM05D006023 ORTHO05D007377 2.4e-58 229.9 206 59.2
EL10Ac5g12082 Beta vulgaris HOM05D006023 ORTHO05D007377 3.1e-58 229.6 218 58.7
COL.COLO4_16998 Corchorus olitorius HOM05D006023 ORTHO05D007377 3.1e-58 229.6 191 64.9
SGA_v2.0_scaffold196G40921 Striga asiatica HOM05D006023 ORTHO05D007377 3.1e-58 229.6 195 61.5
Aa31LG3G9490 Aethionema arabicum HOM05D006023 ORTHO05D007377 5.3e-58 228.8 196 62.8
PSO782G2387 Papaver somniferum HOM05D006023 ORTHO05D007377 5.3e-58 228.8 189 62.4
RcHm_v2.0_Chr7g0210201 Rosa chinensis HOM05D006023 ORTHO05D007377 6.9e-58 228.4 190 63.7
CARHR265970 Cardamine hirsuta HOM05D006023 ORTHO05D007377 1.5e-57 227.3 195 62.6
Hma1.2p1_0303F.1_g118960 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 1.5e-57 227.3 190 61.6
THA.LOC104806716 Tarenaya hassleriana HOM05D006023 ORTHO05D007377 2.0e-57 226.9 200 60.0
Thecc.08G177100 Theobroma cacao HOM05D006023 ORTHO05D007377 5.9e-57 225.3 189 62.4
Aqoxy4G02643 Aquilegia oxysepala HOM05D006023 ORTHO05D007377 1.7e-56 223.8 188 59.6
CAN.G298.27 Capsicum annuum HOM05D006023 ORTHO05D007377 2.9e-56 223.0 138 85.5
Cpa.g.c32853 Carica papaya HOM05D006023 ORTHO05D007377 2.9e-56 223.0 201 60.7
PGSC0003DMG400017522 Solanum tuberosum HOM05D006023 ORTHO05D007377 6.5e-56 221.9 157 76.4
DCAR_004289 Daucus carota HOM05D006023 ORTHO05D007377 8.5e-56 221.5 186 64.0
Rhsim07G0128700 Rhododendron simsii HOM05D006023 ORTHO05D007377 2.5e-55 219.9 229 55.9
Solyc08g076770.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 3.2e-55 219.5 149 79.2
Hma1.2p1_0574F.1_g181560 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 1.0e-53 214.5 164 65.2
Hma1.2p1_1379F.1_g279205 Hydrangea macrophylla HOM05D006023 ORTHO05D007377 1.0e-53 214.5 164 65.2
PSO675G2981 Papaver somniferum HOM05D006023 ORTHO05D007377 1.4e-53 214.2 182 59.9
Psat6g182880 Pisum sativum HOM05D006023 ORTHO05D007377 2.3e-53 213.4 153 73.2
MBI04_g41609_MAGBIO Magnolia biondii HOM05D006023 ORTHO05D007377 3.0e-53 213.0 210 57.6
MD06G1036800 Malus domestica HOM05D006023 ORTHO05D007377 1.3e-51 207.6 198 58.6
ATR0665G562 Amborella trichopoda HOM05D006023 ORTHO05D007377 4.8e-51 205.7 185 58.9
AL4G21070 Arabidopsis lyrata HOM05D006023 ORTHO05D007377 6.3e-51 205.3 201 58.2
PSO541G2859 Papaver somniferum HOM05D006023 ORTHO05D007377 2.0e-49 200.3 166 62.0
HPP92_020908 Vanilla planifolia HOM05D006023 ORTHO05D007377 7.7e-49 198.4 192 53.6
HanXRQChr13g0414191 Helianthus annuus HOM05D006023 ORTHO05D007377 1.3e-48 197.6 157 63.1
Ciclev10022247m.g Citrus clementina HOM05D006023 ORTHO05D007377 4.7e-46 189.1 159 62.3
vmacro14181 Vaccinium macrocarpon HOM05D006023 ORTHO05D007377 5.9e-41 172.2 354 36.2
Zm00001eb024850 Zea mays HOM05D006023 ORTHO05D007377 1.6e-38 164.1 156 54.5
CDE06G2650 Ceratophyllum demersum HOM05D006023 ORTHO05D007377 2.1e-38 163.7 188 52.1
MSTRG.15799 Avicennia marina HOM05D006023 ORTHO05D007377 1.5e-36 157.5 106 73.6
AUR62018698 Chenopodium quinoa HOM05D006023 ORTHO05D007377 2.2e-35 153.7 109 75.2
Pp3c18_16040 Physcomitrium patens HOM05D006023 ORTHO05D007377 3.7e-35 152.9 190 45.3
Mapoly0102s0011 Marchantia polymorpha HOM05D006023 ORTHO05D007377 5.9e-33 145.6 196 43.4
PSO063G6826 Papaver somniferum HOM05D006023 ORTHO05D007377 2.3e-29 133.7 103 67.0
Duzib068G1405 Durio zibethinus HOM05D006023 ORTHO05D007377 3.0e-29 133.3 135 56.3
CBR_g88177 Chara braunii HOM05D006023 ORTHO05D007377 1.3e-27 127.9 120 55.8
FAN18G1032 Fragaria x ananassa HOM05D006023 ORTHO05D007377 2.4e-26 123.6 127 53.5
ClCG06G003760 Citrullus lanatus HOM05D006023 ORTHO05D007377 2.0e-25 120.6 103 61.2
AagrBONN_evm.TU.Sc2ySwM_228.1949 Anthoceros agrestis HOM05D006023 ORTHO05D007377 1.2e-22 111.3 183 41.5
SMO143G0066 Selaginella moellendorffii HOM05D006023 ORTHO05D007377 6.8e-21 105.5 207 33.8
Dinv25231 Davidia involucrata HOM05D006023 ORTHO05D007377 4.4e-20 102.8 74 67.6
Solyc08g076740.4 Solanum lycopersicum HOM05D006023 ORTHO05D007377 3.7e-19 99.8 70 72.9
SEGI_27853 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 1.1e-18 98.2 128 49.2
FAN18G2414 Fragaria x ananassa HOM05D006023 ORTHO05D007377 4.5e-17 92.8 66 72.7
BcaNung06895 Brassica carinata HOM05D006023 ORTHO05D007377 1.0e-16 91.7 79 58.2
AUR62007305 Chenopodium quinoa HOM05D006023 ORTHO05D007377 7.3e-15 85.5 61 72.1
Cre10.g438750 Chlamydomonas reinhardtii HOM05D006023 ORTHO05D007377 2.8e-14 83.6 195 32.8
SEGI_36898 Sequoiadendron giganteum HOM05D006023 ORTHO05D007377 4.4e-12 76.3 50 72.0
Solyc10g074822.1 Solanum lycopersicum HOM05D006023 ORTHO05D007377 4.4e-12 76.3 47 83.0
MD16G1272600 Malus domestica HOM05D006023 ORTHO05D007377 1.4e-10 71.2 48 75.0


User provided reference genes

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