Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 5.3e-72 274.6 160 100.0
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 7.1e-69 264.2 160 88.8
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 4.0e-56 221.9 161 76.4
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 6.9e-56 221.1 161 75.8
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 1.7e-54 216.5 161 73.9
Peaxi162Scf00930g00051 Petunia axillaris HOM05D003853 ORTHO05D004171 1.5e-39 166.8 128 84.4
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 2.0e-34 149.8 138 68.1
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 6.1e-28 128.3 132 56.8
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 5.2e-27 125.2 152 51.3
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.3e-25 120.6 152 51.3
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 1.7e-25 120.2 147 55.8
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 4.8e-25 118.6 136 58.1
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 1.1e-24 117.5 145 50.3
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 3.1e-24 115.9 152 53.9
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 1.2e-23 114.0 139 55.4
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 3.5e-23 112.5 128 63.3
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 3.5e-23 112.5 140 56.4
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 3.5e-23 112.5 154 57.1
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 5.9e-23 111.7 132 62.9
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 7.7e-23 111.3 158 55.7
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 1.3e-22 110.5 142 60.6
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 2.5e-21 106.3 124 54.0
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 4.2e-21 105.5 118 51.7
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 4.2e-21 105.5 151 55.0
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 9.4e-21 104.4 139 52.5
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 2.1e-20 103.2 164 51.8
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 3.6e-20 102.4 131 46.6
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 4.7e-20 102.1 127 48.0
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 1.8e-19 100.1 127 48.0
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 2.3e-19 99.8 123 55.3
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 4.0e-19 99.0 147 47.6
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 5.2e-19 98.6 127 47.2
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 8.8e-19 97.8 148 39.9
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 8.8e-19 97.8 156 42.3
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 5.7e-18 95.1 133 45.1
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 7.5e-18 94.7 134 57.5
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 7.5e-18 94.7 140 47.1
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 7.5e-18 94.7 124 46.8
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 1.7e-17 93.6 138 55.8
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 1.7e-17 93.6 144 47.9
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 2.8e-17 92.8 162 43.2
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 2.8e-17 92.8 152 46.7
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 2.8e-17 92.8 126 46.0
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 3.7e-17 92.4 138 42.0
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 4.8e-17 92.0 138 44.9
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 4.8e-17 92.0 138 44.9
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 4.8e-17 92.0 137 46.7
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 6.3e-17 91.7 138 44.2
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 6.3e-17 91.7 136 48.5
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 6.3e-17 91.7 138 44.2
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 6.3e-17 91.7 138 44.2
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 6.3e-17 91.7 129 45.0
Ah.03g139150 Amaranthus hybridus HOM05D003853 ORTHO05D004171 8.3e-17 91.3 135 44.4
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 8.3e-17 91.3 132 56.1
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 8.3e-17 91.3 132 56.1
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 1.1e-16 90.9 135 47.4
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.1e-16 90.9 79 62.0
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 1.1e-16 90.9 165 40.6
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.1e-16 90.9 158 46.2
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 1.4e-16 90.5 127 46.5
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 1.4e-16 90.5 148 41.2
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 1.8e-16 90.1 92 54.3
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 2.4e-16 89.7 147 45.6
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 2.4e-16 89.7 147 45.6
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 2.4e-16 89.7 127 45.7
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 3.1e-16 89.4 139 51.8
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 4.1e-16 89.0 147 47.6
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 4.1e-16 89.0 154 50.6
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 5.4e-16 88.6 164 48.8
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 5.4e-16 88.6 160 47.5
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 1.6e-15 87.0 136 44.9
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 1.6e-15 87.0 148 41.2
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 1.6e-15 87.0 166 43.4
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 1.6e-15 87.0 124 58.1
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 2.0e-15 86.7 89 55.1
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 3.5e-15 85.9 153 43.1
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 4.5e-15 85.5 167 43.1
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 5.9e-15 85.1 94 51.1
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 5.9e-15 85.1 136 50.0
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 7.7e-15 84.7 67 64.2
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 7.7e-15 84.7 92 54.3
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 1.3e-14 84.0 131 44.3
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 1.3e-14 84.0 131 44.3
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 1.7e-14 83.6 149 42.3
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 1.7e-14 83.6 133 48.9
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 2.9e-14 82.8 159 39.0
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 5.0e-14 82.0 136 44.9
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 5.0e-14 82.0 139 42.4
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 5.0e-14 82.0 139 42.4
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 5.0e-14 82.0 141 52.5
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 1.1e-13 80.9 144 42.4
Manes.01G030000 Manihot esculenta HOM05D003853 ORTHO05D004171 1.5e-13 80.5 94 52.1
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 1.5e-13 80.5 94 50.0
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 3.2e-13 79.3 167 44.3
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 4.2e-13 79.0 148 43.2
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 4.2e-13 79.0 81 51.9
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 5.5e-13 78.6 99 48.5
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 5.5e-13 78.6 92 52.2
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 5.5e-13 78.6 131 41.2
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 7.2e-13 78.2 99 53.5
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 7.2e-13 78.2 160 37.5
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 7.2e-13 78.2 140 50.7
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 7.2e-13 78.2 88 50.0
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 7.2e-13 78.2 95 49.5
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 9.4e-13 77.8 153 43.8
Zm00001eb007060 Zea mays HOM05D003853 ORTHO05D004171 9.4e-13 77.8 126 43.7
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 1.2e-12 77.4 136 39.0
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 1.6e-12 77.0 146 39.0
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 1.6e-12 77.0 150 39.3
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 2.1e-12 76.6 148 37.8
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 2.1e-12 76.6 75 54.7
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 2.1e-12 76.6 125 47.2
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 2.7e-12 76.3 72 59.7
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 2.7e-12 76.3 118 48.3
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 2.7e-12 76.3 136 52.9
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 4.7e-12 75.5 95 48.4
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 4.7e-12 75.5 119 47.9
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 6.1e-12 75.1 136 39.7
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 8.0e-12 74.7 148 47.3
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.0e-11 74.3 82 51.2
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 1.0e-11 74.3 89 48.3
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 1.0e-11 74.3 148 44.6
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 1.0e-11 74.3 82 48.8
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 2.3e-11 73.2 158 35.4
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 2.3e-11 73.2 139 39.6
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 3.0e-11 72.8 91 47.3
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 3.0e-11 72.8 131 38.9
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 4.0e-11 72.4 148 36.5
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 4.0e-11 72.4 146 35.6
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 4.0e-11 72.4 74 50.0
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 4.0e-11 72.4 185 32.4
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 5.2e-11 72.0 101 44.6
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 5.2e-11 72.0 145 35.9
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 5.2e-11 72.0 83 48.2
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 6.8e-11 71.6 153 37.9
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 8.8e-11 71.2 99 45.5
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 8.8e-11 71.2 101 44.6
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 8.8e-11 71.2 76 55.3
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 1.2e-10 70.9 70 58.6
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 2.0e-10 70.1 96 51.0
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 2.6e-10 69.7 98 49.0
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 3.4e-10 69.3 105 44.8
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 3.4e-10 69.3 75 50.7
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 4.4e-10 68.9 130 46.2
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 4.4e-10 68.9 81 51.9
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 4.4e-10 68.9 148 43.9
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 4.4e-10 68.9 71 49.3
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 4.4e-10 68.9 79 51.9
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 5.7e-10 68.6 135 43.7
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 7.5e-10 68.2 129 34.1
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 1.3e-09 67.4 130 39.2
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 1.7e-09 67.0 72 50.0
THA.LOC104805946 Tarenaya hassleriana HOM05D003853 ORTHO05D004171 2.2e-09 66.6 87 42.5
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.8e-09 66.2 130 37.7
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 2.8e-09 66.2 146 39.7
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 2.8e-09 66.2 141 34.8
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 4.9e-09 65.5 127 35.4
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 6.3e-09 65.1 81 49.4
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 6.3e-09 65.1 128 38.3
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 8.3e-09 64.7 73 45.2
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 1.8e-08 63.5 98 42.9
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 1.8e-08 63.5 98 42.9
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 1.8e-08 63.5 98 42.9
vmacro22463 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 5.4e-08 62.0 64 57.8
MD13G1065600 Malus domestica HOM05D003853 ORTHO05D004171 7.0e-08 61.6 72 52.8
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 7.0e-08 61.6 128 38.3
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 9.1e-08 61.2 148 38.5
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.2e-07 60.8 142 33.1
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 1.6e-07 60.5 86 45.3
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 2.0e-07 60.1 72 43.1
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 1.0e-06 57.8 94 40.4
Rhsim12G0134200 Rhododendron simsii HOM05D003853 ORTHO05D004171 1.3e-06 57.4 49 57.1
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 1.3e-06 57.4 66 50.0
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 2.9e-06 56.2 97 36.1


User provided reference genes

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