Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002780g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 5.2e-105 384.4 197 100.0
Nitab4.5_0007100g0040 Nicotiana tabacum HOM05D003086 ORTHO05D003347 6.7e-28 128.3 76 94.7
Sopen03g022700 Solanum pennellii HOM05D003086 ORTHO05D003347 2.8e-26 122.9 77 85.7
PGSC0003DMG400018543 Solanum tuberosum HOM05D003086 ORTHO05D003347 2.8e-26 122.9 77 85.7
CAN.G481.40 Capsicum annuum HOM05D003086 ORTHO05D003347 3.1e-25 119.4 78 84.6
Sopen06g018110 Solanum pennellii HOM05D003086 ORTHO05D003347 1.4e-20 104.0 77 64.9
PGSC0003DMG400019607 Solanum tuberosum HOM05D003086 ORTHO05D003347 1.4e-20 104.0 77 64.9
Solyc06g052060.3 Solanum lycopersicum HOM05D003086 ORTHO05D003347 2.3e-20 103.2 77 64.9
Peaxi162Scf00618g00332 Petunia axillaris HOM05D003086 ORTHO05D003347 6.3e-18 95.1 94 55.3
Nitab4.5_0000015g0220 Nicotiana tabacum HOM05D003086 ORTHO05D003347 5.3e-17 92.0 75 60.0
CAN.G874.33 Capsicum annuum HOM05D003086 ORTHO05D003347 2.0e-16 90.1 68 61.8
Hma1.2p1_0591F.1_g185160 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 2.6e-16 89.7 76 61.8
Peaxi162Scf00740g00215 Petunia axillaris HOM05D003086 ORTHO05D003347 3.5e-16 89.4 56 94.6
Cc02_g01250 Coffea canephora HOM05D003086 ORTHO05D003347 1.0e-15 87.8 83 71.1
SalBow4G0310 Salvia bowleyana HOM05D003086 ORTHO05D003347 3.2e-14 82.8 86 53.5
DCAR_008957 Daucus carota HOM05D003086 ORTHO05D003347 5.5e-14 82.0 75 60.0
Oeu010701.1 Olea europaea HOM05D003086 ORTHO05D003347 5.5e-14 82.0 80 57.5
CSS0010966 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 2.1e-13 80.1 74 59.5
Prupe.2G314400 Prunus persica HOM05D003086 ORTHO05D003347 8.0e-13 78.2 85 50.6
Rhsim09G0207000 Rhododendron simsii HOM05D003086 ORTHO05D003347 1.0e-12 77.8 74 55.4
CsaV3_5G000270 Cucumis sativus L. HOM05D003086 ORTHO05D003347 1.4e-12 77.4 82 56.1
ClCG01G000300 Citrullus lanatus HOM05D003086 ORTHO05D003347 1.8e-12 77.0 83 55.4
MELO3C005905.2 Cucumis melo HOM05D003086 ORTHO05D003347 1.8e-12 77.0 83 55.4
Migut.F00191 Erythranthe guttata HOM05D003086 ORTHO05D003347 2.3e-12 76.6 86 51.2
CSS0006972 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 3.9e-12 75.9 59 62.7
PGR142G1468 Punica granatum HOM05D003086 ORTHO05D003347 5.2e-12 75.5 77 49.4
Cpa.g.sc96.51 Carica papaya HOM05D003086 ORTHO05D003347 2.0e-11 73.6 66 57.6
Actinidia20253 Actinidia chinensis HOM05D003086 ORTHO05D003347 5.7e-11 72.0 68 58.8
MD07G1294800 Malus domestica HOM05D003086 ORTHO05D003347 5.7e-11 72.0 53 62.3
Hma1.2p1_0415F.1_g147960 Hydrangea macrophylla HOM05D003086 ORTHO05D003347 7.4e-11 71.6 75 61.3
Actinidia07974 Actinidia chinensis HOM05D003086 ORTHO05D003347 9.7e-11 71.2 77 51.9
Rhsim07G0002900 Rhododendron simsii HOM05D003086 ORTHO05D003347 9.7e-11 71.2 78 51.3
Nn3g18930 Nelumbo nucifera HOM05D003086 ORTHO05D003347 1.3e-10 70.9 54 63.0
Sed0023695 Sechium edule HOM05D003086 ORTHO05D003347 1.3e-10 70.9 81 51.9
unitig_85.g27205 Utricularia gibba HOM05D003086 ORTHO05D003347 1.3e-10 70.9 70 64.3
HPP92_025720 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.3e-10 70.9 72 56.9
Actinidia18664 Actinidia chinensis HOM05D003086 ORTHO05D003347 1.7e-10 70.5 74 54.1
Manes.05G021200 Manihot esculenta HOM05D003086 ORTHO05D003347 1.7e-10 70.5 59 64.4
ECA233G0233 Erigeron canadensis HOM05D003086 ORTHO05D003347 2.2e-10 70.1 78 51.3
Lsat_1_v5_gn_4_30961 Lactuca sativa HOM05D003086 ORTHO05D003347 2.2e-10 70.1 68 51.5
Migut.B01892 Erythranthe guttata HOM05D003086 ORTHO05D003347 2.8e-10 69.7 70 52.9
HanXRQChr08g0225161 Helianthus annuus HOM05D003086 ORTHO05D003347 2.8e-10 69.7 79 62.0
MD01G1224000 Malus domestica HOM05D003086 ORTHO05D003347 2.8e-10 69.7 53 60.4
Oeu027320.1 Olea europaea HOM05D003086 ORTHO05D003347 2.8e-10 69.7 51 64.7
Medtr8g027380 Medicago truncatula HOM05D003086 ORTHO05D003347 6.3e-10 68.6 75 52.0
Sabra02G0139700 Salix brachista HOM05D003086 ORTHO05D003347 8.2e-10 68.2 67 56.7
Psat4g162600 Pisum sativum HOM05D003086 ORTHO05D003347 1.1e-09 67.8 75 52.0
TAR375G0287 Trochodendron aralioides HOM05D003086 ORTHO05D003347 1.1e-09 67.8 54 63.0
Atru.chr5.701 Acer truncatum HOM05D003086 ORTHO05D003347 1.4e-09 67.4 81 50.6
Potri.002G173700 Populus trichocarpa HOM05D003086 ORTHO05D003347 1.4e-09 67.4 68 57.4
HPP92_013003 Vanilla planifolia HOM05D003086 ORTHO05D003347 1.4e-09 67.4 70 51.4
TAR636G1396 Trochodendron aralioides HOM05D003086 ORTHO05D003347 2.4e-09 66.6 77 50.6
TAR629G1883 Trochodendron aralioides HOM05D003086 ORTHO05D003347 3.1e-09 66.2 76 51.3
TPR.G20234 Trifolium pratense HOM05D003086 ORTHO05D003347 5.3e-09 65.5 75 49.3
Ca_23518_v3 Cicer arietinum L. HOM05D003086 ORTHO05D003347 9.1e-09 64.7 74 48.6
COL.COLO4_06232 Corchorus olitorius HOM05D003086 ORTHO05D003347 9.1e-09 64.7 61 55.7
COL.COLO4_16806 Corchorus olitorius HOM05D003086 ORTHO05D003347 9.1e-09 64.7 75 52.0
Sabra14G0073900 Salix brachista HOM05D003086 ORTHO05D003347 9.1e-09 64.7 67 52.2
SHI13099 Sapria himalayana HOM05D003086 ORTHO05D003347 9.1e-09 64.7 77 51.9
CSS0003230 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.2e-08 64.3 74 50.0
CSS0024306 Camellia sinensis var. sinensis HOM05D003086 ORTHO05D003347 1.2e-08 64.3 74 50.0
Ciclev10022804m.g Citrus clementina HOM05D003086 ORTHO05D003347 1.6e-08 63.9 53 60.4
Gohir.A11G098500 Gossypium hirsutum HOM05D003086 ORTHO05D003347 1.6e-08 63.9 69 52.2
Gohir.D11G103100 Gossypium hirsutum HOM05D003086 ORTHO05D003347 2.0e-08 63.5 69 52.2
Gorai.007G110300 Gossypium raimondii HOM05D003086 ORTHO05D003347 2.0e-08 63.5 69 52.2
QL09p037005 Quercus lobata HOM05D003086 ORTHO05D003347 2.0e-08 63.5 70 48.6
Thecc.03G202500 Theobroma cacao HOM05D003086 ORTHO05D003347 3.5e-08 62.8 75 50.7
Cfa003782 Carpinus fangiana HOM05D003086 ORTHO05D003347 4.5e-08 62.4 59 55.9
Haze_15678 Corylus avellana HOM05D003086 ORTHO05D003347 4.5e-08 62.4 59 55.9
Migut.N01532 Erythranthe guttata HOM05D003086 ORTHO05D003347 4.5e-08 62.4 62 58.1
Gohir.A08G124800 Gossypium hirsutum HOM05D003086 ORTHO05D003347 4.5e-08 62.4 81 48.1
Os10g0502100 Oryza sativa ssp. japonica HOM05D003086 ORTHO05D003347 4.5e-08 62.4 56 55.4
Thecc.01G339800 Theobroma cacao HOM05D003086 ORTHO05D003347 4.5e-08 62.4 72 48.6
Lsat_1_v5_gn_7_740 Lactuca sativa HOM05D003086 ORTHO05D003347 7.7e-08 61.6 57 54.4
Lalb_Chr04g0254361 Lupinus albus HOM05D003086 ORTHO05D003347 1.0e-07 61.2 68 58.8
SalBow5G4530 Salvia bowleyana HOM05D003086 ORTHO05D003347 1.0e-07 61.2 51 58.8
HanXRQChr04g0120471 Helianthus annuus HOM05D003086 ORTHO05D003347 1.3e-07 60.8 59 52.5
BcaB05g23875 Brassica carinata HOM05D003086 ORTHO05D003347 1.7e-07 60.5 56 67.9
MBI17_g21048_MAGBIO Magnolia biondii HOM05D003086 ORTHO05D003347 1.7e-07 60.5 54 59.3
SEGI_15730 Sequoiadendron giganteum HOM05D003086 ORTHO05D003347 2.2e-07 60.1 55 65.5
Phvul.010G115200 Phaseolus vulgaris HOM05D003086 ORTHO05D003347 2.9e-07 59.7 75 44.0
A02p26470 Brassica napus HOM05D003086 ORTHO05D003347 3.8e-07 59.3 56 66.1
BraA02t07650Z Brassica rapa HOM05D003086 ORTHO05D003347 3.8e-07 59.3 56 66.1
Zm00001eb259280 Zea mays HOM05D003086 ORTHO05D003347 3.8e-07 59.3 55 69.1
Aqoxy5G04301 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 5.0e-07 58.9 52 57.7
Cpa.g.sc1802.1 Carica papaya HOM05D003086 ORTHO05D003347 5.0e-07 58.9 57 54.4
HanXRQChr16g0524361 Helianthus annuus HOM05D003086 ORTHO05D003347 6.5e-07 58.5 55 54.5
BcaB01g02737 Brassica carinata HOM05D003086 ORTHO05D003347 8.5e-07 58.2 58 69.0
BcaC01g04661 Brassica carinata HOM05D003086 ORTHO05D003347 8.5e-07 58.2 58 69.0
C03p35200 Brassica napus HOM05D003086 ORTHO05D003347 8.5e-07 58.2 58 69.0
BolC3t15831H Brassica oleracea HOM05D003086 ORTHO05D003347 8.5e-07 58.2 58 69.0
Cfa015968 Carpinus fangiana HOM05D003086 ORTHO05D003347 8.5e-07 58.2 54 51.9
Gohir.A12G248300 Gossypium hirsutum HOM05D003086 ORTHO05D003347 8.5e-07 58.2 78 50.0
MD06G1113400 Malus domestica HOM05D003086 ORTHO05D003347 8.5e-07 58.2 77 45.5
Aqoxy7G00049 Aquilegia oxysepala HOM05D003086 ORTHO05D003347 1.1e-06 57.8 57 49.1
Gorai.004G151100 Gossypium raimondii HOM05D003086 ORTHO05D003347 1.1e-06 57.8 52 57.7
THA.LOC104813050 Tarenaya hassleriana HOM05D003086 ORTHO05D003347 1.1e-06 57.8 56 60.7
Aa31LG2G1580 Aethionema arabicum HOM05D000001 ORTHO05D000003 1.5e-06 57.4 59 67.8
AT4G10810 Arabidopsis thaliana HOM05D003086 ORTHO05D003347 1.5e-06 57.4 56 55.4
A03p29280 Brassica napus HOM05D003086 ORTHO05D003347 1.5e-06 57.4 59 67.8
BraA03t12124Z Brassica rapa HOM05D003086 ORTHO05D003347 1.5e-06 57.4 59 67.8
Carub.0006s2958 Capsella rubella HOM05D003086 ORTHO05D003347 1.5e-06 57.4 56 55.4
Lalb_Chr23g0271671 Lupinus albus HOM05D003086 ORTHO05D003347 1.5e-06 57.4 82 41.5
CDE02G0840 Ceratophyllum demersum HOM05D003086 ORTHO05D003347 1.9e-06 57.0 51 51.0
Haze_09122 Corylus avellana HOM05D003086 ORTHO05D003347 1.9e-06 57.0 80 48.8
Ciclev10023176m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.5e-06 56.6 55 61.8
Ciclev10033638m.g Citrus clementina HOM05D003086 ORTHO05D003347 2.5e-06 56.6 55 61.8
Thhalv10029101m.g Eutrema salsugineum HOM05D003086 ORTHO05D003347 2.5e-06 56.6 56 64.3
Glyma.07G054300 Glycine max HOM05D003086 ORTHO05D003347 2.5e-06 56.6 54 55.6
Manes.01G039600 Manihot esculenta HOM05D003086 ORTHO05D003347 2.5e-06 56.6 51 60.8
BcaB05g23876 Brassica carinata HOM05D003086 ORTHO05D003347 3.2e-06 56.2 56 64.3
BcaC05g27913 Brassica carinata HOM05D003086 ORTHO05D003347 3.2e-06 56.2 56 66.1
A09p28400 Brassica napus HOM05D003086 ORTHO05D003347 3.2e-06 56.2 34 73.5
C05p39210 Brassica napus HOM05D003086 ORTHO05D003347 3.2e-06 56.2 56 66.1
C09p35950 Brassica napus HOM05D003086 ORTHO05D003347 3.2e-06 56.2 56 66.1
BolC5t32654H Brassica oleracea HOM05D003086 ORTHO05D003347 3.2e-06 56.2 56 66.1
BolC9t56428H Brassica oleracea HOM05D003086 ORTHO05D003347 3.2e-06 56.2 56 66.1
BraA09t38405Z Brassica rapa HOM05D003086 ORTHO05D003347 3.2e-06 56.2 34 73.5
Gohir.D11G015350 Gossypium hirsutum HOM05D003086 ORTHO05D003347 3.2e-06 56.2 77 45.5
Lj3g0004362 Lotus japonicus HOM05D003086 ORTHO05D003347 3.2e-06 56.2 36 66.7
Thecc.03G304600 Theobroma cacao HOM05D003086 ORTHO05D003347 3.2e-06 56.2 59 50.8
PGR042G2701 Punica granatum HOM05D003086 ORTHO05D003347 4.2e-06 55.8 73 45.2
Zm00001eb029410 Zea mays HOM05D003086 ORTHO05D003347 4.2e-06 55.8 56 51.8
CANSAT21G0721 Cannabis sativa HOM05D003086 ORTHO05D003347 5.5e-06 55.5 77 48.1
COL.COLO4_10758 Corchorus olitorius HOM05D003086 ORTHO05D003347 5.5e-06 55.5 55 52.7
Sc23g0002030 Simmondsia chinensis HOM05D003086 ORTHO05D003347 5.5e-06 55.5 35 68.6
Aa31LG9G11270 Aethionema arabicum HOM05D003086 ORTHO05D003347 7.2e-06 55.1 56 64.3
AL6G44860 Arabidopsis lyrata HOM05D003086 ORTHO05D003347 7.2e-06 55.1 53 56.6
CARHR255790 Cardamine hirsuta HOM05D003086 ORTHO05D003347 7.2e-06 55.1 53 56.6
Gohir.A11G015250 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.2e-06 55.1 72 50.0
Gohir.D12G249000 Gossypium hirsutum HOM05D003086 ORTHO05D003347 7.2e-06 55.1 79 48.1
Gorai.007G015800 Gossypium raimondii HOM05D003086 ORTHO05D003347 7.2e-06 55.1 72 50.0
Thecc.03G304300 Theobroma cacao HOM05D003086 ORTHO05D003347 7.2e-06 55.1 59 50.8
Gorai.008G267200 Gossypium raimondii HOM05D003086 ORTHO05D003347 9.4e-06 54.7 79 46.8
QL08p045815 Quercus lobata HOM05D003086 ORTHO05D003347 9.4e-06 54.7 33 69.7
SalBow3G3175 Salvia bowleyana HOM05D003086 ORTHO05D003347 9.4e-06 54.7 58 46.6


User provided reference genes

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