Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002775g0020 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1970.3 1009 100.0
Nitab4.5_0000955g0070 Nicotiana tabacum HOM05D005223 ORTHO05D006449 0.0e+00 1889.4 1011 95.7
PGSC0003DMG400025026 Solanum tuberosum HOM05D005223 ORTHO05D006449 0.0e+00 1669.4 1024 83.9
Sopen10g002700 Solanum pennellii HOM05D005223 ORTHO05D006449 0.0e+00 1649.0 1024 83.0
Solyc10g006780.4 Solanum lycopersicum HOM05D005223 ORTHO05D006449 0.0e+00 1635.9 1024 82.2
CAN.G1110.40 Capsicum annuum HOM05D005223 ORTHO05D006449 0.0e+00 1604.7 1021 81.8
Peaxi162Scf00536g00422 Petunia axillaris HOM05D005223 ORTHO05D006449 0.0e+00 1507.3 1007 78.6
Dinv38469 Davidia involucrata HOM05D005223 ORTHO05D006449 0.0e+00 1234.6 990 65.6
Cc04_g10370 Coffea canephora HOM05D005223 ORTHO05D006449 0.0e+00 1225.3 1001 63.5
CSS0037650 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 0.0e+00 1215.7 1016 63.6
Hma1.2p1_0123F.1_g058130 Hydrangea macrophylla HOM05D005223 ORTHO05D006449 0.0e+00 1202.2 1026 62.0
Cfa018892 Carpinus fangiana HOM05D005223 ORTHO05D006449 0.0e+00 1199.1 1016 62.3
QL10p005060 Quercus lobata HOM05D005223 ORTHO05D006449 0.0e+00 1198.3 1014 61.0
Rhsim08G0185000 Rhododendron simsii HOM05D005223 ORTHO05D006449 0.0e+00 1187.2 1022 61.1
Haze_07276 Corylus avellana HOM05D005223 ORTHO05D006449 0.0e+00 1184.9 1016 62.1
GSVIVG01007540001 Vitis vinifera HOM05D005223 ORTHO05D006449 0.0e+00 1184.9 1048 59.3
Lj9C475T6 Lonicera japonica HOM05D005223 ORTHO05D006449 0.0e+00 1181.4 1038 60.6
MSTRG.11293 Avicennia marina HOM05D005223 ORTHO05D006449 0.0e+00 1177.5 1016 60.2
vmacro19239 Vaccinium macrocarpon HOM05D005223 ORTHO05D006449 0.0e+00 1176.8 1069 59.5
MD14G1163600 Malus domestica HOM05D005223 ORTHO05D006449 0.0e+00 1167.1 1021 60.2
Atru.chr9.1012 Acer truncatum HOM05D005223 ORTHO05D006449 0.0e+00 1165.6 1009 60.4
Prupe.5G157000 Prunus persica HOM05D005223 ORTHO05D006449 0.0e+00 1159.1 1010 60.3
RcHm_v2.0_Chr7g0191161 Rosa chinensis HOM05D005223 ORTHO05D006449 0.0e+00 1156.0 1019 60.1
SGA_v2.0_scaffold457G51932 Striga asiatica HOM05D005223 ORTHO05D006449 0.0e+00 1151.0 1018 59.2
Migut.I00475 Erythranthe guttata HOM05D005223 ORTHO05D006449 0.0e+00 1149.8 1014 58.4
FAN18G3380 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1147.9 1020 60.3
FvH4_5g07490 Fragaria vesca HOM05D005223 ORTHO05D006449 0.0e+00 1142.1 1020 60.1
Thecc.03G122800 Theobroma cacao HOM05D005223 ORTHO05D006449 0.0e+00 1140.6 1015 59.3
CANSAT80G2773 Cannabis sativa HOM05D005223 ORTHO05D006449 0.0e+00 1137.1 1023 58.7
Gohir.A07G053500 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1135.2 1021 59.5
Ciclev10018616m.g Citrus clementina HOM05D005223 ORTHO05D006449 0.0e+00 1134.8 1018 58.8
Gorai.001G061400 Gossypium raimondii HOM05D005223 ORTHO05D006449 0.0e+00 1133.6 1021 59.2
FAN04G2946 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1133.2 1018 59.9
Gohir.D07G057900 Gossypium hirsutum HOM05D005223 ORTHO05D006449 0.0e+00 1132.9 1021 59.1
TWI14G1297 Tripterygium wilfordii HOM05D005223 ORTHO05D006449 0.0e+00 1132.9 1015 59.2
FAN13G2650 Fragaria x ananassa HOM05D005223 ORTHO05D006449 0.0e+00 1132.1 1025 59.9
TAR629G2346 Trochodendron aralioides HOM05D005223 ORTHO05D006449 0.0e+00 1129.8 1008 59.4
SalBow5G2547 Salvia bowleyana HOM05D005223 ORTHO05D006449 0.0e+00 1129.4 1038 57.2
HanXRQChr05g0154741 Helianthus annuus HOM05D005223 ORTHO05D006449 0.0e+00 1116.7 1001 58.7
ECA246G2102 Erigeron canadensis HOM05D005223 ORTHO05D006449 0.0e+00 1110.1 1003 58.8
Manes.06G115300 Manihot esculenta HOM05D005223 ORTHO05D006449 0.0e+00 1104.0 1020 57.4
Potri.015G090700 Populus trichocarpa HOM05D005223 ORTHO05D006449 0.0e+00 1102.8 1024 57.2
Ca_16089_v3 Cicer arietinum L. HOM05D005223 ORTHO05D006449 0.0e+00 1099.3 1013 57.7
Glyma.04G193000 Glycine max HOM05D005223 ORTHO05D006449 0.0e+00 1098.2 1016 57.6
DCAR_021603 Daucus carota HOM05D005223 ORTHO05D006449 0.0e+00 1097.0 1019 58.2
Phvul.009G168800 Phaseolus vulgaris HOM05D005223 ORTHO05D006449 0.0e+00 1096.3 1015 57.5
Lj1g0000662 Lotus japonicus HOM05D005223 ORTHO05D006449 0.0e+00 1095.5 1019 57.4
Medtr3g075100 Medicago truncatula HOM05D005223 ORTHO05D006449 0.0e+00 1093.2 1015 56.9
Lsat_1_v5_gn_5_13240 Lactuca sativa HOM05D005223 ORTHO05D006449 0.0e+00 1088.2 985 57.9
VMungo1309G0017 Vigna mungo HOM05D005223 ORTHO05D006449 0.0e+00 1087.0 1021 57.6
Eucgr.L01337 Eucalyptus grandis HOM05D005223 ORTHO05D006449 0.0e+00 1085.1 1021 56.5
MELO3C002332.2 Cucumis melo HOM05D005223 ORTHO05D006449 0.0e+00 1081.2 1015 56.1
Lalb_Chr08g0236961 Lupinus albus HOM05D005223 ORTHO05D006449 0.0e+00 1078.9 1014 57.3
CsaV3_1G009290 Cucumis sativus L. HOM05D005223 ORTHO05D006449 0.0e+00 1078.5 1014 55.7
Nn4g22461 Nelumbo nucifera HOM05D005223 ORTHO05D006449 0.0e+00 1077.4 1022 58.2
ClCG03G003490 Citrullus lanatus HOM05D005223 ORTHO05D006449 2.6e-309 1065.4 1014 55.3
TPR.G13978 Trifolium pratense HOM05D005223 ORTHO05D006449 4.4e-309 1064.7 1014 56.6
Sed0011232 Sechium edule HOM05D005223 ORTHO05D006449 1.7e-308 1062.8 1018 55.7
Aqoxy5G03583 Aquilegia oxysepala HOM05D005223 ORTHO05D006449 1.1e-307 1060.1 1014 55.6
Sabra15G0112800 Salix brachista HOM05D005223 ORTHO05D000001 2.1e-306 1055.8 1000 56.7
Duzib084G0239 Durio zibethinus HOM05D005223 ORTHO05D006449 5.6e-304 1047.7 1016 55.9
CiPaw.12G035700 Carya illinoinensis HOM05D005223 ORTHO05D006449 2.2e-300 1035.8 904 60.7
arahy.Tifrunner.gnm1.ann1.D4E4RT Arachis hypogaea HOM05D005223 ORTHO05D006449 4.9e-300 1034.6 1051 54.5
PSO063G1058 Papaver somniferum HOM05D005223 ORTHO05D006449 3.0e-297 1025.4 1022 53.9
PGR083G1937 Punica granatum HOM05D005223 ORTHO05D006449 5.2e-294 1014.6 1038 53.2
THA.LOC104818196 Tarenaya hassleriana HOM05D005223 ORTHO05D006449 1.2e-293 1013.4 1030 53.9
Sc10g0010350 Simmondsia chinensis HOM05D005223 ORTHO05D006449 1.6e-290 1003.0 958 56.2
SGA_v2.0_scaffold50G18602 Striga asiatica HOM05D005223 ORTHO05D006449 1.5e-285 986.5 1019 54.2
Carub.0005s1465 Capsella rubella HOM05D005223 ORTHO05D006449 8.4e-284 980.7 1020 52.5
AT3G48470 Arabidopsis thaliana HOM05D005223 ORTHO05D006449 5.4e-283 978.0 1020 52.3
AL5G27880 Arabidopsis lyrata HOM05D005223 ORTHO05D006449 6.6e-281 971.1 1018 52.0
ATR0824G104 Amborella trichopoda HOM05D005223 ORTHO05D006449 4.9e-276 954.9 982 52.7
C03p66340 Brassica napus HOM05D005223 ORTHO05D006449 1.4e-275 953.4 1025 51.6
Sp5g13560 Schrenkiella parvula HOM05D005223 ORTHO05D006449 4.2e-275 951.8 1025 50.7
CARHR157230 Cardamine hirsuta HOM05D005223 ORTHO05D006449 7.1e-275 951.0 1021 51.0
BcaB02g10650 Brassica carinata HOM05D005223 ORTHO05D006449 2.1e-274 949.5 1031 51.6
BcaC01g02344 Brassica carinata HOM05D005223 ORTHO05D006449 3.5e-274 948.7 1025 51.5
EL10Ac7g18074 Beta vulgaris HOM05D005223 ORTHO05D006449 3.9e-273 945.3 1014 53.0
AUR62025728 Chenopodium quinoa HOM05D005223 ORTHO05D006449 3.9e-273 945.3 1034 52.4
AUR62001278 Chenopodium quinoa HOM05D005223 ORTHO05D006449 1.1e-272 943.7 1032 52.7
BraA06t25704Z Brassica rapa HOM05D005223 ORTHO05D006449 9.6e-272 940.6 1032 51.3
Psat5g141880 Pisum sativum HOM05D005223 ORTHO05D006449 4.8e-271 938.3 920 55.4
A06p27680 Brassica napus HOM05D005223 ORTHO05D006449 2.4e-270 936.0 1028 51.4
CDE02G2587 Ceratophyllum demersum HOM05D005223 ORTHO05D006449 1.5e-269 933.3 1002 51.4
BolC3t18905H Brassica oleracea HOM05D005223 ORTHO05D006449 8.4e-268 927.5 1045 50.3
Zm00001eb246300 Zea mays HOM05D005223 ORTHO05D006449 1.3e-265 920.2 985 49.8
COL.COLO4_09267 Corchorus olitorius HOM05D005223 ORTHO05D006449 3.4e-261 905.6 842 58.1
Os02g0598800 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 1.3e-260 903.7 997 49.5
Hund18539 Selenicereus undatus HOM05D005223 ORTHO05D006449 1.3e-260 903.7 961 52.4
Thhalv10010098m.g Eutrema salsugineum HOM05D005223 ORTHO05D006449 5.9e-253 878.2 1022 48.6
Glyma.06G172900 Glycine max HOM05D005223 ORTHO05D006449 2.5e-243 846.3 770 59.0
arahy.Tifrunner.gnm1.ann1.9N92ER Arachis hypogaea HOM05D005223 ORTHO05D006449 2.6e-237 826.2 776 58.2
Eucgr.B00148 Eucalyptus grandis HOM05D005223 ORTHO05D006449 2.3e-233 813.1 1027 46.9
Os02g0599100 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 3.2e-190 669.8 644 56.2
Os02g0598400 Oryza sativa ssp. japonica HOM05D005223 ORTHO05D006449 4.6e-189 666.0 643 56.1
CSS0005553 Camellia sinensis var. sinensis HOM05D005223 ORTHO05D006449 3.9e-188 662.9 678 55.5
Actinidia19387 Actinidia chinensis HOM05D005223 ORTHO05D006449 2.2e-175 620.5 593 55.3
Aa31LG4G17060 Aethionema arabicum HOM05D005223 ORTHO05D006449 2.1e-162 577.4 630 52.4
Cpa.g.sc52.35 Carica papaya HOM05D005223 ORTHO05D006449 1.6e-157 561.2 549 56.8
Pp3c24_17160 Physcomitrium patens HOM05D005223 ORTHO05D006449 8.2e-154 548.9 1064 35.7
Mapoly0075s0016 Marchantia polymorpha HOM05D005223 ORTHO05D006449 5.3e-145 519.6 1082 34.2
Oeu007006.1 Olea europaea HOM05D005223 ORTHO05D006449 3.6e-141 506.9 348 71.8
SHI10647 Sapria himalayana HOM05D005223 ORTHO05D006449 6.3e-138 496.1 529 54.4
SMO367G0489 Selaginella moellendorffii HOM05D005223 ORTHO05D006449 7.2e-126 456.1 905 35.4
Oeu057221.1 Olea europaea HOM05D005223 ORTHO05D006449 9.8e-107 392.5 385 52.7
CBR_g45764 Chara braunii HOM05D005223 ORTHO05D006449 2.3e-92 344.7 1115 28.0
CBR_g52378 Chara braunii HOM05D005223 ORTHO05D006449 1.7e-87 328.6 1130 27.9
Aa31LG4G17050 Aethionema arabicum HOM05D005223 ORTHO05D006449 2.3e-79 301.6 440 39.1
FvH4_5g07461 Fragaria vesca HOM05D005223 ORTHO05D006449 1.2e-75 289.3 327 51.7
Cpa.g.sc52.34 Carica papaya HOM05D005223 ORTHO05D006449 1.4e-68 265.8 374 40.4
FvH4_3g25520 Fragaria vesca HOM05D005223 ORTHO05D006449 1.6e-56 225.7 266 47.4
MBI11_g36316_MAGBIO Magnolia biondii HOM05D005223 ORTHO05D006449 1.2e-48 199.5 218 50.0
FvH4_5g07361 Fragaria vesca HOM05D005223 ORTHO05D006449 7.9e-48 196.8 553 32.5
Nn8g40428 Nelumbo nucifera HOM05D005223 ORTHO05D006449 3.2e-41 174.9 148 63.5
FvH4_5g07460 Fragaria vesca HOM05D005223 ORTHO05D006449 7.1e-41 173.7 229 45.4
MD06G1153900 Malus domestica HOM05D005223 ORTHO05D006449 1.6e-37 162.5 168 56.5
Lsat_1_v5_gn_0_22080 Lactuca sativa HOM05D005223 ORTHO05D006449 5.1e-31 141.0 149 45.0
SEGI_02888 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 9.0e-28 130.2 222 35.1
QL10p005098 Quercus lobata HOM05D005223 ORTHO05D006449 2.9e-26 125.2 172 42.4
Cre03.g186550 Chlamydomonas reinhardtii HOM05D005223 ORTHO05D006449 2.5e-25 122.1 432 26.9
Nn7g38107 Nelumbo nucifera HOM05D005223 ORTHO05D006449 2.8e-21 108.6 103 55.3
SEGI_05777 Sequoiadendron giganteum HOM05D005223 ORTHO05D006449 1.2e-19 103.2 146 40.4
SalBow5G3736 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.1e-17 96.7 79 60.8
Actinidia25613 Actinidia chinensis HOM05D005223 ORTHO05D006449 3.2e-17 95.1 127 40.9
ECA246G0437 Erigeron canadensis HOM05D005223 ORTHO05D006449 7.9e-16 90.5 216 36.1
AagrBONN_evm.TU.Sc2ySwM_228.970 Anthoceros agrestis HOM05D005223 ORTHO05D006449 1.4e-15 89.7 252 30.2
Lsat_1_v5_gn_1_114041 Lactuca sativa HOM05D005223 ORTHO05D006449 3.3e-14 85.1 77 53.2
DCAR_016747 Daucus carota HOM05D000329 ORTHO05D006449 1.3e-13 83.2 50 68.0
Nitab4.5_0004801g0040 Nicotiana tabacum HOM05D000112 ORTHO05D001327 6.3e-13 80.9 37 97.3
SalBow1G2179 Salvia bowleyana HOM05D005223 ORTHO05D006449 1.8e-12 79.3 67 59.7
SalBow1G1130 Salvia bowleyana HOM05D005223 ORTHO05D006449 5.3e-12 77.8 80 53.8
HPP92_024695 Vanilla planifolia HOM05D005223 ORTHO05D006449 3.5e-11 75.1 160 40.0
RcHm_v2.0_Chr1g0339741 Rosa chinensis HOM05D005223 ORTHO05D006449 1.0e-10 73.6 64 57.8
RcHm_v2.0_Chr0c39g0503251 Rosa chinensis HOM05D005223 ORTHO05D006449 2.5e-09 68.9 54 53.7
RcHm_v2.0_Chr1g0353191 Rosa chinensis HOM05D005223 ORTHO05D006449 2.5e-09 68.9 54 53.7
Nn3g20975 Nelumbo nucifera HOM05D005223 ORTHO05D006449 4.2e-09 68.2 100 49.0
RcHm_v2.0_Chr4g0412201 Rosa chinensis HOM05D005223 ORTHO05D006449 2.1e-08 65.9 64 54.7
MCO03G522 Micromonas commoda HOM05D005223 ORTHO05D006449 1.8e-07 62.8 426 25.1
Actinidia19388 Actinidia chinensis HOM05D005223 ORTHO05D006449 2.3e-07 62.4 33 87.9


User provided reference genes

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