Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.7e-255 885.6 463 100.0
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 6.7e-228 793.9 460 91.5
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 3.8e-215 751.5 463 86.0
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 3.1e-209 731.9 463 84.4
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 1.0e-207 726.9 463 84.0
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 9.1e-185 650.6 438 80.6
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.6e-141 506.9 274 94.5
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 1.6e-141 506.9 300 88.0
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 9.9e-139 497.7 464 58.0
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 4.2e-137 492.3 463 58.1
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 7.1e-137 491.5 467 58.0
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 2.3e-135 486.5 464 57.1
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 3.9e-135 485.7 465 57.2
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 7.3e-134 481.5 462 59.5
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 9.6e-134 481.1 463 57.0
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 1.6e-133 480.3 463 56.6
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 3.6e-133 479.2 466 56.7
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 1.4e-132 477.2 463 56.8
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 4.0e-132 475.7 461 57.5
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 3.4e-131 472.6 476 56.1
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 5.8e-131 471.9 463 56.4
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 1.3e-130 470.7 465 56.1
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 3.8e-130 469.2 418 59.6
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 1.4e-129 467.2 463 55.7
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 9.3e-129 464.5 465 56.3
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 1.2e-128 464.2 468 53.4
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 1.6e-128 463.8 463 53.6
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 6.0e-128 461.8 464 54.5
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 6.0e-128 461.8 461 55.5
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 7.9e-128 461.5 446 57.4
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 1.5e-126 457.2 461 54.9
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 5.6e-126 455.3 465 54.0
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 3.6e-125 452.6 465 54.0
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 1.4e-124 450.7 420 57.1
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 1.8e-124 450.3 460 53.7
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 3.1e-124 449.5 466 54.5
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 2.0e-123 446.8 466 53.2
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 2.6e-123 446.4 463 52.9
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 3.4e-123 446.0 463 53.8
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 5.8e-123 445.3 464 54.5
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 8.4e-122 441.4 433 55.7
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 2.4e-121 439.9 433 55.4
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 3.2e-121 439.5 465 54.8
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 4.2e-121 439.1 464 52.8
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 1.5e-118 430.6 418 54.8
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.3e-118 429.5 418 54.5
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 6.2e-117 425.2 461 51.6
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 3.1e-116 422.9 385 57.7
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 3.1e-116 422.9 463 49.7
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 5.3e-116 422.2 431 53.4
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 7.6e-115 418.3 444 53.8
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.0e-114 417.9 464 49.1
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 1.7e-114 417.2 463 49.9
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 2.2e-114 416.8 439 53.3
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 2.9e-114 416.4 421 52.0
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 3.8e-114 416.0 463 48.8
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 6.5e-114 415.2 361 62.0
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 1.1e-113 414.5 464 48.3
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 1.4e-113 414.1 466 51.3
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 4.2e-113 412.5 439 53.1
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 5.5e-113 412.1 331 63.7
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 1.2e-112 411.0 463 50.3
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 7.9e-112 408.3 469 48.4
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 1.3e-111 407.5 407 52.1
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 1.8e-111 407.1 462 48.1
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 3.0e-111 406.4 463 47.5
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 5.1e-111 405.6 463 47.5
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 6.7e-111 405.2 411 53.3
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 6.7e-111 405.2 402 51.5
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 1.1e-110 404.4 464 49.6
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 3.3e-110 402.9 411 53.5
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 7.4e-110 401.7 463 46.7
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 2.8e-109 399.8 463 47.3
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 8.2e-109 398.3 355 58.3
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 8.2e-109 398.3 464 48.3
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 2.4e-108 396.7 463 46.9
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 2.4e-108 396.7 463 46.9
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 4.5e-107 392.5 462 50.0
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 5.9e-107 392.1 687 38.6
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 1.9e-105 387.1 466 51.3
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 8.7e-103 378.3 383 54.0
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 8.7e-103 378.3 437 51.7
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 1.1e-102 377.9 506 46.0
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 1.5e-102 377.5 421 48.7
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 5.7e-102 375.6 464 48.9
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 1.1e-100 371.3 463 47.5
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 3.8e-98 362.8 560 42.1
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 4.2e-97 359.4 470 46.0
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 9.4e-97 358.2 463 46.2
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 9.4e-97 358.2 432 49.1
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 4.6e-96 355.9 425 49.6
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 1.8e-95 354.0 364 53.6
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 3.3e-94 349.7 300 60.7
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 1.3e-90 337.8 380 50.3
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 1.3e-90 337.8 443 44.9
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 5.2e-87 325.9 263 64.6
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 8.8e-87 325.1 361 49.0
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 1.3e-85 321.2 420 46.4
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 4.8e-85 319.3 294 57.8
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 2.0e-83 313.9 372 48.4
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 3.5e-83 313.2 395 48.9
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 5.5e-81 305.8 299 56.2
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 1.2e-80 304.7 343 49.3
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 4.7e-80 302.8 501 42.5
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.5e-78 297.7 161 95.7
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 1.8e-76 290.8 457 39.8
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 5.3e-76 289.3 465 41.5
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 1.2e-75 288.1 241 61.4
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 6.8e-71 272.3 168 85.1
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 3.4e-70 270.0 372 44.9
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 1.0e-66 258.5 235 57.9
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.2e-66 257.3 247 55.1
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.4e-63 248.1 253 56.1
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 8.3e-61 238.8 304 47.0
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 9.2e-60 235.3 459 37.7
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 2.0e-59 234.2 169 65.7
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 4.7e-56 223.0 162 75.3
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 8.9e-47 192.2 235 46.0
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 1.9e-44 184.5 317 42.9
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 9.8e-38 162.2 413 34.1
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 1.7e-34 151.4 423 31.7
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 2.5e-33 147.5 103 66.0
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 4.4e-30 136.7 384 31.5
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 7.8e-27 125.9 197 42.6
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 7.3e-25 119.4 167 43.7
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 9.9e-22 109.0 162 41.4
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 2.2e-21 107.8 68 77.9
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 5.4e-20 103.2 119 47.9
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 2.7e-19 100.9 125 43.2
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 1.5e-17 95.1 136 44.1
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 7.6e-14 82.8 93 53.8
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 6.4e-13 79.7 81 50.6
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.1e-12 79.0 75 54.7
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.1e-12 79.0 75 54.7
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.4e-12 77.8 75 53.3
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 7.1e-12 76.3 115 43.5
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.6e-11 75.1 75 53.3
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 6.0e-11 73.2 62 56.5
THA.LOC104827753 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 1.8e-07 61.6 73 47.9
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 5.8e-06 56.6 45 62.2
COL.COLO4_04261 Corchorus olitorius HOM05D040554 ORTHO05D010957 9.9e-06 55.8 32 75.0


User provided reference genes

Program Settings