Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002768g0050 Nicotiana tabacum HOM05D005258 ORTHO05D006525 4.9e-260 900.6 445 100.0
Nitab4.5_0015019g0010 Nicotiana tabacum HOM05D005258 ORTHO05D006525 9.5e-248 859.8 453 94.7
Sopen06g033760 Solanum pennellii HOM05D005258 ORTHO05D006525 6.0e-234 813.9 453 89.2
PGSC0003DMG400030379 Solanum tuberosum HOM05D005258 ORTHO05D006525 1.7e-233 812.4 453 89.2
Solyc06g082370.4 Solanum lycopersicum HOM05D005258 ORTHO05D006525 4.3e-232 807.7 453 88.3
Peaxi162Scf00390g00538 Petunia axillaris HOM05D005258 ORTHO05D006525 5.8e-213 744.2 448 84.4
Nitab4.5_0002494g0040 Nicotiana tabacum HOM05D005258 ORTHO05D006525 1.9e-211 739.2 436 85.8
Lj2C1095G3 Lonicera japonica HOM05D005258 ORTHO05D006525 2.5e-179 632.5 460 69.1
Dinv12244 Davidia involucrata HOM05D005258 ORTHO05D006525 7.4e-176 620.9 395 75.4
Dinv09684 Davidia involucrata HOM05D005258 ORTHO05D006525 1.3e-175 620.2 395 75.4
CSS0008764 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 2.0e-173 612.8 471 65.0
CSS0033097 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 3.5e-173 612.1 470 65.1
Actinidia01232 Actinidia chinensis HOM05D005258 ORTHO05D006525 4.5e-173 611.7 471 65.8
Manes.18G136600 Manihot esculenta HOM05D005258 ORTHO05D006525 2.1e-170 602.8 470 64.5
Rhsim11G0040500 Rhododendron simsii HOM05D005258 ORTHO05D006525 4.0e-169 598.6 464 65.7
PGR102G1249 Punica granatum HOM05D005258 ORTHO05D006525 2.0e-168 596.3 460 65.4
Duzib168G0041 Durio zibethinus HOM05D005258 ORTHO05D006525 1.3e-167 593.6 466 66.5
Gohir.D08G220900 Gossypium hirsutum HOM05D005258 ORTHO05D006525 1.4e-166 590.1 467 65.7
Eucgr.B04012 Eucalyptus grandis HOM05D005258 ORTHO05D006525 1.8e-166 589.7 379 73.6
Gohir.A08G203600 Gossypium hirsutum HOM05D005258 ORTHO05D006525 2.4e-166 589.3 471 65.6
MD03G1058000 Malus domestica HOM05D005258 ORTHO05D006525 2.4e-166 589.3 454 64.5
Prupe.6G046100 Prunus persica HOM05D005258 ORTHO05D006525 1.2e-165 587.0 454 65.0
Psat5g152360 Pisum sativum HOM05D005258 ORTHO05D006525 1.6e-165 586.6 454 65.4
GSVIVG01024619001 Vitis vinifera HOM05D005258 ORTHO05D006525 2.7e-165 585.9 405 70.6
MD11G1060300 Malus domestica HOM05D005258 ORTHO05D006525 4.5e-165 585.1 456 64.0
Sabra13G0123700 Salix brachista HOM05D005258 ORTHO05D006525 5.9e-165 584.7 462 63.2
FAN11G2675 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.7e-164 583.2 452 65.3
MELO3C020493.2 Cucumis melo HOM05D005258 ORTHO05D006525 2.2e-164 582.8 459 65.4
Ca_15017_v3 Cicer arietinum L. HOM05D005258 ORTHO05D006525 3.8e-164 582.0 454 65.2
vmacro00112 Vaccinium macrocarpon HOM05D005258 ORTHO05D006525 5.0e-164 581.6 402 70.4
THA.LOC104812325 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 8.5e-164 580.9 380 72.6
Glyma.11G163000 Glycine max HOM05D005258 ORTHO05D006525 1.5e-163 580.1 454 64.5
Lsat_1_v5_gn_9_14481 Lactuca sativa HOM05D005258 ORTHO05D006525 2.5e-163 579.3 429 66.7
Gorai.004G234600 Gossypium raimondii HOM05D005258 ORTHO05D006525 4.2e-163 578.6 470 64.7
Potri.013G153900 Populus trichocarpa HOM05D005258 ORTHO05D006525 7.2e-163 577.8 463 63.1
CsaV3_1G036740 Cucumis sativus L. HOM05D005258 ORTHO05D006525 1.6e-162 576.6 457 64.1
CDE06G2080 Ceratophyllum demersum HOM05D005258 ORTHO05D006525 2.1e-162 576.2 449 65.5
CsaV3_6G022490 Cucumis sativus L. HOM05D005258 ORTHO05D006525 2.1e-162 576.2 460 64.8
Cpa.g.sc53.44 Carica papaya HOM05D005258 ORTHO05D006525 2.7e-162 575.9 418 68.4
FvH4_3g39930 Fragaria vesca HOM05D005258 ORTHO05D006525 2.7e-162 575.9 460 64.1
HanXRQChr08g0228541 Helianthus annuus HOM05D005258 ORTHO05D006525 2.7e-162 575.9 472 62.5
Sed0015134 Sechium edule HOM05D005258 ORTHO05D006525 2.7e-162 575.9 464 64.7
Sc21g0004960 Simmondsia chinensis HOM05D005258 ORTHO05D006525 3.6e-162 575.5 475 60.8
TWI75G0534 Tripterygium wilfordii HOM05D005258 ORTHO05D006525 1.4e-161 573.5 474 63.7
Lj2g0020421 Lotus japonicus HOM05D005258 ORTHO05D006525 2.3e-161 572.8 456 64.7
Glyma.18G056300 Glycine max HOM05D005258 ORTHO05D006525 4.0e-161 572.0 454 63.4
CANSAT54G1230 Cannabis sativa HOM05D005258 ORTHO05D006525 6.8e-161 571.2 461 63.3
QL04p095946 Quercus lobata HOM05D005258 ORTHO05D006525 6.8e-161 571.2 469 63.5
THA.LOC104813633 Tarenaya hassleriana HOM05D005258 ORTHO05D006525 8.8e-161 570.9 378 71.2
Phvul.006G074900 Phaseolus vulgaris HOM05D005258 ORTHO05D006525 1.2e-160 570.5 454 63.4
Ciclev10001075m.g Citrus clementina HOM05D005258 ORTHO05D006525 2.0e-160 569.7 379 71.2
Lj6g0021320 Lotus japonicus HOM05D005258 ORTHO05D006525 2.0e-160 569.7 456 64.3
Lalb_Chr18g0051461 Lupinus albus HOM05D005258 ORTHO05D006525 2.0e-160 569.7 454 64.5
Medtr3g031280 Medicago truncatula HOM05D005258 ORTHO05D006525 9.8e-160 567.4 454 63.7
Aqoxy2G00760 Aquilegia oxysepala HOM05D005258 ORTHO05D006525 1.3e-159 567.0 473 61.1
MSTRG.21245 Avicennia marina HOM05D005258 ORTHO05D006525 3.7e-159 565.5 453 62.3
ECA247G3025 Erigeron canadensis HOM05D005258 ORTHO05D006525 6.3e-159 564.7 476 61.6
arahy.Tifrunner.gnm1.ann1.0U7N6T Arachis hypogaea HOM05D005258 ORTHO05D006525 4.1e-158 562.0 474 61.0
MBI18_g09779_MAGBIO Magnolia biondii HOM05D005258 ORTHO05D006525 2.7e-157 559.3 369 71.8
arahy.Tifrunner.gnm1.ann1.R5QLIS Arachis hypogaea HOM05D005258 ORTHO05D006525 3.5e-157 558.9 450 63.3
CARHR017340 Cardamine hirsuta HOM05D005258 ORTHO05D006525 3.5e-157 558.9 430 64.9
Migut.D00841 Erythranthe guttata HOM05D005258 ORTHO05D006525 1.3e-156 557.0 466 61.2
Atru.chr1.2577 Acer truncatum HOM05D005258 ORTHO05D006525 1.7e-156 556.6 395 68.6
Cc01_g14990 Coffea canephora HOM05D005258 ORTHO05D006525 2.3e-156 556.2 469 60.8
TAR624G0064 Trochodendron aralioides HOM05D005258 ORTHO05D006525 3.8e-156 555.4 470 63.2
BcaB02g06669 Brassica carinata HOM05D005258 ORTHO05D006525 1.9e-155 553.1 381 69.6
A06p12780 Brassica napus HOM05D005258 ORTHO05D006525 5.5e-155 551.6 382 69.9
AT1G16870 Arabidopsis thaliana HOM05D005258 ORTHO05D006525 7.2e-155 551.2 381 70.1
BcaC05g25543 Brassica carinata HOM05D005258 ORTHO05D006525 7.2e-155 551.2 380 69.5
Carub.0001s1661 Capsella rubella HOM05D005258 ORTHO05D006525 2.1e-154 549.7 478 60.7
Sp1g15010 Schrenkiella parvula HOM05D005258 ORTHO05D006525 2.1e-154 549.7 398 66.8
AL1G29040 Arabidopsis lyrata HOM05D005258 ORTHO05D006525 2.8e-154 549.3 381 69.8
PSO339G6698 Papaver somniferum HOM05D005258 ORTHO05D006525 6.1e-154 548.1 459 60.6
PSO384G2283 Papaver somniferum HOM05D005258 ORTHO05D006525 8.0e-154 547.7 459 60.1
Thhalv10007506m.g Eutrema salsugineum HOM05D005258 ORTHO05D006525 1.0e-153 547.4 381 69.6
C05p15090 Brassica napus HOM05D005258 ORTHO05D006525 4.0e-153 545.4 393 67.7
SGA_v2.0_scaffold80G25693 Striga asiatica HOM05D005258 ORTHO05D006525 8.3e-151 537.7 506 55.5
Nn6g33319 Nelumbo nucifera HOM05D005258 ORTHO05D006525 2.3e-148 529.6 334 75.1
SalBow6G5766 Salvia bowleyana HOM05D005258 ORTHO05D006525 2.3e-148 529.6 462 58.7
Hund19201 Selenicereus undatus HOM05D005258 ORTHO05D006525 2.9e-148 529.3 495 58.2
HPP92_026488 Vanilla planifolia HOM05D005258 ORTHO05D006525 1.1e-147 527.3 463 58.7
ClCG03G000160 Citrullus lanatus HOM05D005258 ORTHO05D006525 5.6e-147 525.0 482 60.0
Os07g0202900 Oryza sativa ssp. japonica HOM05D005258 ORTHO05D006525 5.2e-145 518.5 367 65.4
Lj2g0010469 Lotus japonicus HOM05D005258 ORTHO05D006525 1.5e-144 516.9 335 73.4
Haze_24429 Corylus avellana HOM05D005258 ORTHO05D006525 3.4e-144 515.8 493 56.4
TPR.G25689 Trifolium pratense HOM05D005258 ORTHO05D006525 9.8e-144 514.2 336 72.9
CiPaw.14G053300 Carya illinoinensis HOM05D005258 ORTHO05D006525 2.4e-142 509.6 420 62.6
Zm00001eb116240 Zea mays HOM05D005258 ORTHO05D006525 1.0e-140 504.2 445 56.6
DCAR_028395 Daucus carota HOM05D005258 ORTHO05D006525 1.1e-139 500.7 398 63.3
EL10Ac7g15872 Beta vulgaris HOM05D005258 ORTHO05D006525 7.5e-136 488.0 398 62.1
Cfa011791 Carpinus fangiana HOM05D005258 ORTHO05D006525 2.9e-135 486.1 454 58.4
Aa31LG7G1300 Aethionema arabicum HOM05D005258 ORTHO05D006525 5.4e-134 481.9 443 57.6
HPP92_014227 Vanilla planifolia HOM05D005258 ORTHO05D006525 9.2e-134 481.1 317 71.3
ATR0681G175 Amborella trichopoda HOM05D005258 ORTHO05D006525 1.0e-132 477.6 384 63.0
CiPaw.13G067700 Carya illinoinensis HOM05D005258 ORTHO05D006525 2.3e-129 466.5 373 62.5
SalBow6G5836 Salvia bowleyana HOM05D005258 ORTHO05D006525 5.2e-129 465.3 427 57.1
Dinv28705 Davidia involucrata HOM05D005258 ORTHO05D006525 1.6e-125 453.8 282 76.6
unitig_747.g21452 Utricularia gibba HOM05D005258 ORTHO05D006525 2.7e-125 453.0 381 59.6
AUR62036231 Chenopodium quinoa HOM05D005258 ORTHO05D006525 5.1e-124 448.7 452 56.0
AUR62009714 Chenopodium quinoa HOM05D005258 ORTHO05D006525 7.3e-123 444.9 452 55.3
Ah.08g215410 Amaranthus hybridus HOM05D005258 ORTHO05D006525 6.8e-121 438.3 450 54.7
SEGI_17098 Sequoiadendron giganteum HOM05D005258 ORTHO05D006525 1.5e-120 437.2 357 58.8
CAN.G1095.27 Capsicum annuum HOM05D005258 ORTHO05D006525 6.9e-113 411.8 209 92.8
COL.COLO4_11171 Corchorus olitorius HOM05D005258 ORTHO05D006525 7.8e-109 398.3 449 50.6
Rhsim06G0112000 Rhododendron simsii HOM05D005258 ORTHO05D006525 1.9e-107 393.7 418 51.7
Thecc.09G359400 Theobroma cacao HOM05D005258 ORTHO05D006525 6.0e-101 372.1 256 71.9
CAN.G1095.26 Capsicum annuum HOM05D005258 ORTHO05D000750 3.0e-100 369.8 236 80.5
TAR633G1809 Trochodendron aralioides HOM05D005258 ORTHO05D006525 3.8e-95 352.8 278 65.1
VMungo0540G0790 Vigna mungo HOM05D005258 ORTHO05D006525 7.1e-94 348.6 209 78.0
Mapoly0019s0020 Marchantia polymorpha HOM05D005258 ORTHO05D006525 4.2e-86 322.8 358 45.8
Pp3c11_22290 Physcomitrium patens HOM05D005258 ORTHO05D006525 4.6e-85 319.3 404 45.3
BraA06t24438Z Brassica rapa HOM05D005258 ORTHO05D006525 1.8e-81 307.4 170 85.3
QL01p025810 Quercus lobata HOM05D005258 ORTHO05D006525 9.0e-81 305.1 283 58.3
FAN25G3091 Fragaria x ananassa HOM05D005258 ORTHO05D006525 2.2e-79 300.4 287 54.0
AagrBONN_evm.TU.Sc2ySwM_117.1403 Anthoceros agrestis HOM05D005258 ORTHO05D006525 8.5e-79 298.5 359 44.6
RcHm_v2.0_Chr5g0071921 Rosa chinensis HOM05D005258 ORTHO05D006525 1.4e-78 297.7 175 81.7
SMO353G0383 Selaginella moellendorffii HOM05D005258 ORTHO05D006525 1.1e-67 261.5 279 47.7
VMungo0540G2447 Vigna mungo HOM05D005258 ORTHO05D006525 1.7e-63 247.7 239 56.1
RcHm_v2.0_Chr5g0071911 Rosa chinensis HOM05D005258 ORTHO05D006525 3.8e-63 246.5 242 54.1
FAN16G1300 Fragaria x ananassa HOM05D005258 ORTHO05D006525 6.5e-63 245.7 243 53.9
FAN21G1740 Fragaria x ananassa HOM05D005258 ORTHO05D006525 1.0e-60 238.4 237 52.3
CBR_g40648 Chara braunii HOM05D005258 ORTHO05D006525 2.3e-52 210.7 292 43.5
BolC5t30224H Brassica oleracea HOM05D005258 ORTHO05D006525 9.8e-51 205.3 165 61.8
TAR628G0009 Trochodendron aralioides HOM05D005258 ORTHO05D006525 1.3e-50 204.9 246 51.6
BcaC07g38819 Brassica carinata HOM05D005258 ORTHO05D006525 1.4e-49 201.4 231 50.2
CAN.G403.12 Capsicum annuum HOM05D005258 ORTHO05D006525 3.5e-48 196.8 156 66.7
C08p17580 Brassica napus HOM05D005258 ORTHO05D006525 1.4e-41 174.9 95 83.2
QL01p025812 Quercus lobata HOM05D005258 ORTHO05D006525 1.5e-35 154.8 88 76.1
BolC8t49383H Brassica oleracea HOM05D005258 ORTHO05D006525 1.6e-29 134.8 75 81.3
MBI11_g20619_MAGBIO Magnolia biondii HOM05D000666 ORTHO05D001431 1.0e-28 132.1 141 51.1
TAR628G1613 Trochodendron aralioides HOM05D005258 ORTHO05D006525 2.0e-27 127.9 217 39.6
PRCOL_00003540 Prasinoderma coloniale HOM05D005258 ORTHO05D006525 7.0e-25 119.4 274 33.9
BraA08t35049Z Brassica rapa HOM05D005258 ORTHO05D006525 1.9e-22 111.3 67 79.1
CAN.G1538.6 Capsicum annuum HOM05D005258 ORTHO05D006525 3.6e-21 107.1 72 75.0
Lsat_1_v5_gn_3_46641 Lactuca sativa HOM05D005258 ORTHO05D006525 3.1e-20 104.0 130 46.2
CSS0045112 Camellia sinensis var. sinensis HOM05D005258 ORTHO05D006525 7.1e-17 92.8 69 62.3
MCO01G624 Micromonas commoda HOM05D005258 ORTHO05D006525 3.3e-14 84.0 270 27.8
Lsat_1_v5_gn_3_46621 Lactuca sativa HOM05D005258 ORTHO05D006525 2.1e-13 81.3 63 63.5
SalBow6G4442 Salvia bowleyana HOM05D005258 ORTHO05D010875 1.1e-09 68.9 39 74.4
CAN.G1236.5 Capsicum annuum HOM05D001621 ORTHO05D013110 3.2e-09 67.4 39 82.1
CAN.G140.11 Capsicum annuum HOM05D001621 ORTHO05D013110 3.2e-09 67.4 39 82.1
Lsat_1_v5_gn_7_20901 Lactuca sativa HOM05D005258 ORTHO05D006525 4.1e-09 67.0 38 71.1
A08p31260 Brassica napus HOM05D005258 ORTHO05D006525 1.3e-07 62.0 49 63.3
SalBow1G0607 Salvia bowleyana HOM05D005258 ORTHO05D362423 5.1e-07 60.1 77 40.3
Cre03.g176700 Chlamydomonas reinhardtii HOM05D005258 ORTHO05D006525 8.6e-07 59.3 78 41.0


User provided reference genes

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