Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002765g0060 Nicotiana tabacum HOM05D004652 ORTHO05D005634 1.2e-200 703.0 349 100.0
Nitab4.5_0001221g0030 Nicotiana tabacum HOM05D004652 ORTHO05D005634 2.7e-189 665.2 349 95.7
PGSC0003DMG400004028 Solanum tuberosum HOM05D004652 ORTHO05D005634 2.3e-180 635.6 349 89.7
Solyc02g093170.4 Solanum lycopersicum HOM05D004652 ORTHO05D005634 5.6e-179 630.9 349 88.8
Sopen02g037740 Solanum pennellii HOM05D004652 ORTHO05D005634 7.4e-179 630.6 348 88.8
Peaxi162Scf00549g00023 Petunia axillaris HOM05D004652 ORTHO05D005634 2.1e-178 629.0 349 89.1
Actinidia36476 Actinidia chinensis HOM05D004652 ORTHO05D005634 7.7e-152 540.8 349 75.6
Dinv30009 Davidia involucrata HOM05D004652 ORTHO05D005634 6.5e-151 537.7 349 76.5
MSTRG.23735 Avicennia marina HOM05D004652 ORTHO05D005634 1.1e-150 537.0 349 74.5
Migut.H00415 Erythranthe guttata HOM05D004652 ORTHO05D005634 1.0e-148 530.4 347 71.8
CSS0025726 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 1.4e-148 530.0 350 73.7
Hma1.2p1_0670F.1_g200440 Hydrangea macrophylla HOM05D004652 ORTHO05D005634 2.8e-146 522.3 351 74.1
Cc07_g06170 Coffea canephora HOM05D004652 ORTHO05D005634 2.4e-145 519.2 349 71.1
Nn5g30355 Nelumbo nucifera HOM05D004652 ORTHO05D005634 4.1e-145 518.5 347 73.8
CiPaw.01G015500 Carya illinoinensis HOM05D004652 ORTHO05D005634 9.1e-145 517.3 349 71.9
GSVIVG01022087001 Vitis vinifera HOM05D004652 ORTHO05D005634 5.9e-144 514.6 349 72.5
CANSAT25G2702 Cannabis sativa HOM05D004652 ORTHO05D005634 1.0e-143 513.8 349 70.8
QL06p040720 Quercus lobata HOM05D004652 ORTHO05D005634 1.0e-143 513.8 348 71.3
RcHm_v2.0_Chr2g0106191 Rosa chinensis HOM05D004652 ORTHO05D005634 1.0e-143 513.8 349 72.2
Actinidia12037 Actinidia chinensis HOM05D004652 ORTHO05D005634 1.7e-143 513.1 378 68.8
CiPaw.01G015800 Carya illinoinensis HOM05D004652 ORTHO05D005634 3.8e-143 511.9 349 71.6
CSS0033708 Camellia sinensis var. sinensis HOM05D004652 ORTHO05D005634 7.2e-142 507.7 335 74.0
MD02G1175800 Malus domestica HOM05D004652 ORTHO05D005634 7.2e-142 507.7 351 72.6
Lj2g0023089 Lotus japonicus HOM05D004652 ORTHO05D005634 2.1e-141 506.1 351 71.8
arahy.Tifrunner.gnm1.ann1.8Y90C0 Arachis hypogaea HOM05D004652 ORTHO05D005634 3.6e-141 505.4 356 70.8
arahy.Tifrunner.gnm1.ann1.EFTP1R Arachis hypogaea HOM05D004652 ORTHO05D005634 1.8e-140 503.1 356 70.8
FvH4_1g16330 Fragaria vesca HOM05D004652 ORTHO05D005634 2.3e-140 502.7 349 70.8
FAN19G0057 Fragaria x ananassa HOM05D004652 ORTHO05D005634 4.0e-140 501.9 349 70.8
Haze_15373 Corylus avellana HOM05D004652 ORTHO05D005634 1.2e-139 500.4 379 66.0
Lj7A73G20 Lonicera japonica HOM05D004652 ORTHO05D005634 1.5e-139 500.0 308 77.3
MELO3C020851.2 Cucumis melo HOM05D004652 ORTHO05D005634 2.6e-139 499.2 349 69.3
CsaV3_2G016420 Cucumis sativus L. HOM05D004652 ORTHO05D005634 2.6e-139 499.2 349 69.3
Glyma.11G054000 Glycine max HOM05D004652 ORTHO05D005634 2.6e-139 499.2 350 71.4
FAN23G0595 Fragaria x ananassa HOM05D004652 ORTHO05D005634 3.3e-139 498.8 349 69.6
Ciclev10025986m.g Citrus clementina HOM05D004652 ORTHO05D005634 4.8e-138 495.0 351 70.4
HanXRQChr15g0490761 Helianthus annuus HOM05D004652 ORTHO05D005634 1.4e-137 493.4 349 68.5
Lsat_1_v5_gn_4_165120 Lactuca sativa HOM05D004652 ORTHO05D005634 4.1e-137 491.9 350 69.7
Duzib147G0331 Durio zibethinus HOM05D004652 ORTHO05D005634 9.1e-137 490.7 343 69.7
Phvul.002G017100 Phaseolus vulgaris HOM05D004652 ORTHO05D005634 1.2e-136 490.3 351 70.1
Glyma.01G188100 Glycine max HOM05D004652 ORTHO05D005634 2.0e-136 489.6 350 70.0
VMungo1215G2858 Vigna mungo HOM05D004652 ORTHO05D005634 2.0e-136 489.6 350 68.9
FAN28G0632 Fragaria x ananassa HOM05D004652 ORTHO05D005634 4.5e-136 488.4 353 68.3
unitig_736.g22389 Utricularia gibba HOM05D004652 ORTHO05D005634 4.5e-136 488.4 350 66.3
DCAR_010876 Daucus carota HOM05D004652 ORTHO05D005634 5.9e-136 488.0 355 69.6
Psat3g034240 Pisum sativum HOM05D004652 ORTHO05D005634 1.3e-135 486.9 350 70.6
Medtr7g104350 Medicago truncatula HOM05D004652 ORTHO05D005634 2.9e-135 485.7 350 69.7
PSO675G7477 Papaver somniferum HOM05D004652 ORTHO05D005634 2.9e-135 485.7 342 69.6
Gorai.007G215700 Gossypium raimondii HOM05D004652 ORTHO05D005634 5.0e-135 485.0 347 69.5
TPR.G19549 Trifolium pratense HOM05D004652 ORTHO05D005634 5.0e-135 485.0 347 69.5
Lalb_Chr05g0213341 Lupinus albus HOM05D004652 ORTHO05D005634 6.5e-135 484.6 351 69.2
PGR102G1991 Punica granatum HOM05D004652 ORTHO05D005634 7.2e-134 481.1 352 67.6
Cpa.g.sc55.119 Carica papaya HOM05D004652 ORTHO05D005634 2.1e-133 479.6 328 71.3
Potri.007G045900 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.0e-132 477.2 349 67.0
ECA232G0198 Erigeron canadensis HOM05D004652 ORTHO05D005634 1.8e-132 476.5 326 71.5
GSVIVG01031712001 Vitis vinifera HOM05D004652 ORTHO05D005634 2.3e-132 476.1 349 69.9
Thecc.01G060000 Theobroma cacao HOM05D004652 ORTHO05D005634 5.2e-132 474.9 306 73.9
Sed0013827 Sechium edule HOM05D004652 ORTHO05D005634 1.2e-131 473.8 352 66.8
Manes.13G121100 Manihot esculenta HOM05D004652 ORTHO05D005634 4.4e-131 471.9 352 66.5
vmacro05311 Vaccinium macrocarpon HOM05D004652 ORTHO05D005634 4.4e-131 471.9 350 67.4
TWI09G0879 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 2.2e-130 469.5 348 66.7
Oeu049898.1 Olea europaea HOM05D004652 ORTHO05D005634 6.3e-130 468.0 303 75.2
Gorai.013G045700 Gossypium raimondii HOM05D004652 ORTHO05D005634 1.4e-129 466.8 313 74.4
Gohir.A11G195100 Gossypium hirsutum HOM05D004652 ORTHO05D005634 2.4e-129 466.1 307 72.3
Atru.chr5.2643 Acer truncatum HOM05D004652 ORTHO05D005634 5.4e-129 464.9 315 72.4
Atru.chr5.2649 Acer truncatum HOM05D004652 ORTHO05D005634 5.4e-129 464.9 315 72.4
Gohir.A13G042200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 5.4e-129 464.9 313 73.5
Aqoxy6G01262 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 7.0e-129 464.5 351 67.0
AUR62013234 Chenopodium quinoa HOM05D004652 ORTHO05D005634 9.1e-129 464.2 320 71.6
Thecc.02G103600 Theobroma cacao HOM05D004652 ORTHO05D005634 1.6e-128 463.4 313 73.2
Sabra09G0075900 Salix brachista HOM05D004652 ORTHO05D005634 4.5e-128 461.8 350 67.4
TWI31G1310 Tripterygium wilfordii HOM05D004652 ORTHO05D005634 5.9e-128 461.5 308 72.1
Duzib132G1249 Durio zibethinus HOM05D004652 ORTHO05D005634 2.9e-127 459.1 315 72.1
Sc07g0000730 Simmondsia chinensis HOM05D004652 ORTHO05D005634 3.8e-127 458.8 347 65.4
SGA_v2.0_scaffold143G35809 Striga asiatica HOM05D004652 ORTHO05D005634 3.8e-127 458.8 281 75.1
Ciclev10030127m.g Citrus clementina HOM05D004652 ORTHO05D005634 6.5e-127 458.0 350 66.3
Eucgr.I01131 Eucalyptus grandis HOM05D004652 ORTHO05D005634 6.5e-127 458.0 352 66.2
Potri.009G099600 Populus trichocarpa HOM05D004652 ORTHO05D005634 8.5e-127 457.6 350 66.3
Sabra07G0041100 Salix brachista HOM05D004652 ORTHO05D005634 2.8e-125 452.6 383 60.3
Rhsim10G0114700 Rhododendron simsii HOM05D004652 ORTHO05D005634 1.2e-123 447.2 311 71.7
SGA_v2.0_scaffold34G13618 Striga asiatica HOM05D004652 ORTHO05D005634 2.6e-123 446.0 282 74.5
Os03g0109700 Oryza sativa ssp. japonica HOM05D004652 ORTHO05D005634 6.3e-122 441.4 330 65.8
Atru.chr3.293 Acer truncatum HOM05D004652 ORTHO05D005634 8.3e-122 441.0 353 63.2
EL10Ac9g22324 Beta vulgaris HOM05D004652 ORTHO05D005634 4.1e-121 438.7 352 63.4
Sp7g31800 Schrenkiella parvula HOM05D004652 ORTHO05D005634 1.2e-120 437.2 316 68.7
Gohir.D11G201200 Gossypium hirsutum HOM05D004652 ORTHO05D005634 5.9e-120 434.9 287 72.8
AT4G34090 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 1.3e-119 433.7 314 68.5
THA.LOC104807263 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 1.7e-119 433.3 314 67.5
AL7G17310 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 2.9e-119 432.6 314 68.5
PSO541G5706 Papaver somniferum HOM05D004652 ORTHO05D005634 2.9e-119 432.6 342 63.5
Carub.0007s0633 Capsella rubella HOM05D004652 ORTHO05D005634 6.6e-119 431.4 314 67.5
CDE02G2369 Ceratophyllum demersum HOM05D004652 ORTHO05D005634 6.6e-119 431.4 313 67.7
CARHR242200 Cardamine hirsuta HOM05D004652 ORTHO05D005634 8.6e-119 431.0 314 67.5
Ah.01g017900 Amaranthus hybridus HOM05D004652 ORTHO05D005634 3.3e-118 429.1 281 73.7
Thhalv10025679m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 3.3e-118 429.1 316 67.7
BcaNung03359 Brassica carinata HOM05D004652 ORTHO05D005634 4.3e-118 428.7 313 67.1
Eucgr.H01690 Eucalyptus grandis HOM05D004652 ORTHO05D005634 4.7e-117 425.2 325 64.0
AUR62010252 Chenopodium quinoa HOM05D004652 ORTHO05D005634 5.2e-116 421.8 281 73.0
Prupe.6G231900 Prunus persica HOM05D004652 ORTHO05D005634 6.8e-116 421.4 290 72.1
THA.LOC104807591 Tarenaya hassleriana HOM05D004652 ORTHO05D005634 1.5e-115 420.2 346 60.4
Hund13540 Selenicereus undatus HOM05D004652 ORTHO05D005634 2.0e-115 419.9 335 61.2
Aa31LG2G16510 Aethionema arabicum HOM05D002471 ORTHO05D003712 5.7e-115 418.3 308 67.2
ATR0724G029 Amborella trichopoda HOM05D004652 ORTHO05D005634 1.3e-114 417.2 310 64.2
AT2G23370 Arabidopsis thaliana HOM05D004652 ORTHO05D005634 1.1e-113 414.1 336 59.8
Zm00001eb404220 Zea mays HOM05D004652 ORTHO05D005634 2.7e-112 409.5 313 63.3
BolC8t51563H Brassica oleracea HOM05D004652 ORTHO05D005634 7.8e-112 407.9 345 59.4
AUR62001905 Chenopodium quinoa HOM05D004652 ORTHO05D005634 1.0e-111 407.5 340 59.7
Carub.0004s0257 Capsella rubella HOM05D004652 ORTHO05D005634 1.7e-111 406.8 330 60.6
HPP92_024094 Vanilla planifolia HOM05D004652 ORTHO05D005634 2.3e-111 406.4 351 61.8
BcaC07g40988 Brassica carinata HOM05D004652 ORTHO05D005634 8.6e-111 404.4 345 59.1
C08p39900 Brassica napus HOM05D004652 ORTHO05D005634 8.6e-111 404.4 345 59.1
A09p56940 Brassica napus HOM05D004652 ORTHO05D005634 1.1e-110 404.1 327 60.2
AL4G13280 Arabidopsis lyrata HOM05D004652 ORTHO05D005634 2.5e-110 402.9 320 60.6
CARHR293000 Cardamine hirsuta HOM05D004652 ORTHO05D005634 3.3e-110 402.5 315 61.6
Sp4g02380 Schrenkiella parvula HOM05D004652 ORTHO05D005634 7.3e-110 401.4 345 58.3
BraA09t41086Z Brassica rapa HOM05D004652 ORTHO05D005634 3.6e-109 399.1 327 59.6
Hund00119 Selenicereus undatus HOM05D004652 ORTHO05D005634 1.7e-106 390.2 345 59.7
BolC7t46455H Brassica oleracea HOM05D004652 ORTHO05D005634 5.0e-103 378.6 316 62.0
BraA03t15329Z Brassica rapa HOM05D004652 ORTHO05D005634 7.3e-102 374.8 310 62.3
AUR62003906 Chenopodium quinoa HOM05D004652 ORTHO05D005634 3.6e-101 372.5 284 61.6
Aa31LG7G13600 Aethionema arabicum HOM05D004652 ORTHO05D005634 8.9e-100 367.9 388 51.8
C07p60150 Brassica napus HOM05D004652 ORTHO05D005634 1.3e-98 364.0 343 57.1
ClCG02G012270 Citrullus lanatus HOM05D004652 ORTHO05D005634 2.2e-98 363.2 264 67.0
COL.COLO4_24563 Corchorus olitorius HOM05D004652 ORTHO05D005634 2.9e-98 362.8 253 69.6
A03p62590 Brassica napus HOM05D004652 ORTHO05D005634 6.4e-98 361.7 343 56.9
Mapoly0032s0004 Marchantia polymorpha HOM05D004652 ORTHO05D005634 1.1e-97 360.9 313 55.6
SMO367G0761 Selaginella moellendorffii HOM05D004652 ORTHO05D005634 9.2e-97 357.8 303 54.5
Ca_08994_v3 Cicer arietinum L. HOM05D004652 ORTHO05D005634 1.7e-95 353.6 348 56.0
Cpa.g.sc200.27 Carica papaya HOM05D004652 ORTHO05D005634 5.1e-95 352.1 366 53.8
Pp3c4_13980 Physcomitrium patens HOM05D004652 ORTHO05D005634 1.5e-94 350.5 327 52.9
Thhalv10000243m.g Eutrema salsugineum HOM05D004652 ORTHO05D005634 2.6e-91 339.7 338 51.8
Pp3c13_18360 Physcomitrium patens HOM05D004652 ORTHO05D005634 1.3e-87 327.4 311 50.2
COL.COLO4_32629 Corchorus olitorius HOM05D004652 ORTHO05D005634 2.3e-87 326.6 350 53.4
EL10Ac6g15724 Beta vulgaris HOM05D004652 ORTHO05D005634 7.3e-86 321.6 237 64.1
AagrBONN_evm.TU.Sc2ySwM_362.2895 Anthoceros agrestis HOM05D004652 ORTHO05D005634 6.2e-85 318.5 325 50.2
CBR_g34458 Chara braunii HOM05D004652 ORTHO05D005634 2.9e-82 309.7 356 46.1
Oeu004436.1 Olea europaea HOM05D004652 ORTHO05D005634 2.4e-81 306.6 322 54.3
Ah.02g125990 Amaranthus hybridus HOM05D004652 ORTHO05D005634 1.8e-76 290.4 286 52.4
Eucgr.I01132 Eucalyptus grandis HOM05D004652 ORTHO05D005634 1.2e-75 287.7 237 62.9
FAN26G0096 Fragaria x ananassa HOM05D004652 ORTHO05D005634 3.4e-75 286.2 164 79.9
Gohir.D13G040700 Gossypium hirsutum HOM05D004652 ORTHO05D005634 9.9e-75 284.6 202 71.3
TAR381G1258 Trochodendron aralioides HOM05D004652 ORTHO05D005634 1.4e-65 254.2 207 63.3
SEGI_25477 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 1.9e-57 227.3 165 61.2
SEGI_26044 Sequoiadendron giganteum HOM05D004652 ORTHO05D005634 1.9e-57 227.3 165 61.2
Aqoxy2G01254 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 2.5e-57 226.9 140 75.7
TAR381G1342 Trochodendron aralioides HOM05D004652 ORTHO05D005634 3.9e-47 193.0 112 80.4
Cre13.g563150 Chlamydomonas reinhardtii HOM05D004652 ORTHO05D005634 8.2e-45 185.3 324 33.3
Aqoxy4G02413 Aquilegia oxysepala HOM05D004652 ORTHO05D005634 1.2e-40 171.4 109 74.3
PRCOL_00001748 Prasinoderma coloniale HOM05D004652 ORTHO05D005634 2.1e-40 170.6 316 36.4
ECA248G0229 Erigeron canadensis HOM05D004652 ORTHO05D005634 7.9e-40 168.7 130 61.5
MCO15G669 Micromonas commoda HOM05D004652 ORTHO05D005634 2.0e-35 154.1 334 31.4
TAR381G1519 Trochodendron aralioides HOM05D004652 ORTHO05D005634 8.0e-32 142.1 164 47.6
Potri.001G304401 Populus trichocarpa HOM05D004652 ORTHO05D005634 1.5e-25 121.3 131 48.9
Sabra07G0040900 Salix brachista HOM05D015619 ORTHO05D009044 1.6e-24 117.9 84 66.7
Lalb_Chr09g0323281 Lupinus albus HOM05D004652 ORTHO05D005634 1.2e-22 111.7 177 39.0
MCO09G010 Micromonas commoda HOM05D004652 ORTHO05D005634 4.4e-22 109.8 247 31.2
Cc00_g07740 Coffea canephora HOM05D004652 ORTHO05D005634 3.5e-19 100.1 288 27.4
CDE01G0594 Ceratophyllum demersum HOM05D000934 ORTHO05D000746 1.0e-15 88.6 105 42.9
FAN23G0103 Fragaria x ananassa HOM05D004652 ORTHO05D198901 3.0e-07 60.5 118 36.4


User provided reference genes

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