Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002761g0050 Nicotiana tabacum HOM05D002454 ORTHO05D002581 3.7e-61 238.0 122 100.0
Nitab4.5_0005362g0040 Nicotiana tabacum HOM05D002454 ORTHO05D002581 3.3e-25 118.6 111 65.8
CAN.G1485.4 Capsicum annuum HOM05D002454 ORTHO05D002581 5.4e-20 101.3 114 58.8
Sopen01g028330 Solanum pennellii HOM05D002454 ORTHO05D002581 7.1e-20 100.9 114 57.9
PGSC0003DMG400011336 Solanum tuberosum HOM05D002454 ORTHO05D002581 7.1e-20 100.9 114 57.9
Solyc01g066720.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 2.1e-19 99.4 114 57.0
TAR362G1065 Trochodendron aralioides HOM05D002454 ORTHO05D002581 1.0e-18 97.1 111 55.0
TAR633G0870 Trochodendron aralioides HOM05D002454 ORTHO05D002581 1.7e-18 96.3 114 54.4
Nn3g21488 Nelumbo nucifera HOM05D002454 ORTHO05D002581 8.7e-18 94.0 119 52.9
PSO407G0328 Papaver somniferum HOM05D002454 ORTHO05D002581 1.1e-17 93.6 112 53.6
Aqoxy2G02946 Aquilegia oxysepala HOM05D002454 ORTHO05D002581 2.5e-17 92.4 111 54.1
PSO170G3553 Papaver somniferum HOM05D002454 ORTHO05D002581 2.5e-17 92.4 112 52.7
Aqoxy311s003 Aquilegia oxysepala HOM05D002454 ORTHO05D002581 3.3e-17 92.0 110 51.8
Atru.chr2.78 Acer truncatum HOM05D002454 ORTHO05D002581 4.3e-17 91.7 114 51.8
Ciclev10002947m.g Citrus clementina HOM05D002454 ORTHO05D002581 4.3e-17 91.7 114 51.8
Migut.N00091 Erythranthe guttata HOM05D002454 ORTHO05D002581 5.6e-17 91.3 99 55.6
Sed0014863 Sechium edule HOM05D002454 ORTHO05D002581 5.6e-17 91.3 114 51.8
CiPaw.07G022000 Carya illinoinensis HOM05D002454 ORTHO05D002581 9.6e-17 90.5 114 50.9
Gohir.A13G174600 Gossypium hirsutum HOM05D002454 ORTHO05D002581 9.6e-17 90.5 114 50.0
MELO3C015302.2 Cucumis melo HOM05D002454 ORTHO05D002581 1.3e-16 90.1 114 52.6
CsaV3_1G038780 Cucumis sativus L. HOM05D002454 ORTHO05D002581 1.3e-16 90.1 114 52.6
Gorai.013G205800 Gossypium raimondii HOM05D002454 ORTHO05D002581 1.3e-16 90.1 114 50.0
Gohir.D13G180400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 1.6e-16 89.7 114 50.0
ClCG03G017350 Citrullus lanatus HOM05D002454 ORTHO05D002581 2.1e-16 89.4 114 51.8
Peaxi162Scf00246g01119 Petunia axillaris HOM05D002454 ORTHO05D002581 2.1e-16 89.4 113 54.9
Hund24891 Selenicereus undatus HOM05D002454 ORTHO05D002581 2.1e-16 89.4 104 53.8
CiPaw.08G161500 Carya illinoinensis HOM05D002454 ORTHO05D002581 2.8e-16 89.0 114 50.0
Migut.G00144 Erythranthe guttata HOM05D002454 ORTHO05D002581 2.8e-16 89.0 100 57.0
Sabra05G0030000 Salix brachista HOM05D002454 ORTHO05D002581 2.8e-16 89.0 104 55.8
MSTRG.10103 Avicennia marina HOM05D002454 ORTHO05D002581 3.6e-16 88.6 112 51.8
TAR636G0741 Trochodendron aralioides HOM05D002454 ORTHO05D002581 8.1e-16 87.4 114 47.4
CSS0006290 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 1.1e-15 87.0 104 52.9
CSS0039594 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 1.1e-15 87.0 104 52.9
Sabra13G0013500 Salix brachista HOM05D002454 ORTHO05D002581 1.4e-15 86.7 102 52.9
Sabra13G0017600 Salix brachista HOM05D002454 ORTHO05D002581 1.4e-15 86.7 102 52.9
Manes.08G116900 Manihot esculenta HOM05D002454 ORTHO05D002581 1.8e-15 86.3 103 54.4
CSS0023853 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 2.4e-15 85.9 115 50.4
MBI05_g23047_MAGBIO Magnolia biondii HOM05D002454 ORTHO05D002581 2.4e-15 85.9 116 50.0
MSTRG.24796 Avicennia marina HOM05D002454 ORTHO05D002581 3.1e-15 85.5 100 52.0
CSS0040486 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 3.1e-15 85.5 115 50.4
Potri.013G015400 Populus trichocarpa HOM05D002454 ORTHO05D002581 3.1e-15 85.5 105 51.4
Cc03_g01740 Coffea canephora HOM05D002454 ORTHO05D002581 4.0e-15 85.1 103 51.5
Hma1.2p1_3694F.1_g337270 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 4.0e-15 85.1 100 54.0
CSS0003270 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 6.9e-15 84.3 114 50.9
Lsat_1_v5_gn_9_124081 Lactuca sativa HOM05D002454 ORTHO05D002581 6.9e-15 84.3 115 47.8
CANSAT54G0741 Cannabis sativa HOM05D002454 ORTHO05D002581 9.0e-15 84.0 105 50.5
GSVIVG01035144001 Vitis vinifera HOM05D002454 ORTHO05D002581 9.0e-15 84.0 114 50.0
Eucgr.H04538 Eucalyptus grandis HOM05D002454 ORTHO05D002581 2.0e-14 82.8 114 47.4
Thecc.05G313800 Theobroma cacao HOM05D002454 ORTHO05D002581 2.0e-14 82.8 111 50.5
Haze_04132 Corylus avellana HOM05D002454 ORTHO05D002581 2.6e-14 82.4 110 49.1
Rhsim02G0008300 Rhododendron simsii HOM05D002454 ORTHO05D002581 2.6e-14 82.4 126 46.0
SalBow2G3642 Salvia bowleyana HOM05D002454 ORTHO05D002581 2.6e-14 82.4 99 51.5
ATR0796G294 Amborella trichopoda HOM05D002454 ORTHO05D002581 4.5e-14 81.6 111 46.8
Aa31LG11G9520 Aethionema arabicum HOM05D002454 ORTHO05D002581 5.8e-14 81.3 110 49.1
Oeu035681.1 Olea europaea HOM05D002454 ORTHO05D002581 5.8e-14 81.3 136 41.2
Potri.005G024500 Populus trichocarpa HOM05D002454 ORTHO05D002581 5.8e-14 81.3 104 51.9
CSS0013533 Camellia sinensis var. sinensis HOM05D002454 ORTHO05D002581 7.6e-14 80.9 111 51.4
Gohir.A11G268400 Gossypium hirsutum HOM05D002454 ORTHO05D002581 7.6e-14 80.9 114 46.5
Gorai.007G300500 Gossypium raimondii HOM05D002454 ORTHO05D002581 7.6e-14 80.9 114 46.5
HanXRQChr11g0339891 Helianthus annuus HOM05D002454 ORTHO05D002581 7.6e-14 80.9 104 50.0
AL6G39160 Arabidopsis lyrata HOM05D002454 ORTHO05D002581 9.9e-14 80.5 105 49.5
Duzib106G1307 Durio zibethinus HOM05D002454 ORTHO05D002581 9.9e-14 80.5 116 46.6
HanXRQChr09g0248141 Helianthus annuus HOM05D002454 ORTHO05D002581 9.9e-14 80.5 106 47.2
Lsat_1_v5_gn_7_72000 Lactuca sativa HOM05D002454 ORTHO05D002581 9.9e-14 80.5 110 50.0
PGR031G0452 Punica granatum HOM05D002454 ORTHO05D002581 9.9e-14 80.5 114 43.0
Carub.0006s2479 Capsella rubella HOM05D002454 ORTHO05D002581 1.3e-13 80.1 105 48.6
COL.COLO4_10529 Corchorus olitorius HOM05D002454 ORTHO05D002581 1.7e-13 79.7 114 44.7
Prupe.6G319900 Prunus persica HOM05D002454 ORTHO05D002581 1.7e-13 79.7 102 47.1
Duzib128G1382 Durio zibethinus HOM05D002454 ORTHO05D002581 2.2e-13 79.3 114 45.6
Eucgr.B01597 Eucalyptus grandis HOM05D002454 ORTHO05D002581 2.2e-13 79.3 103 47.6
Manes.09G171100 Manihot esculenta HOM05D002454 ORTHO05D002581 2.2e-13 79.3 103 48.5
PGR031G1098 Punica granatum HOM05D002454 ORTHO05D002581 2.2e-13 79.3 114 46.5
Gohir.D11G278300 Gossypium hirsutum HOM05D002454 ORTHO05D002581 2.9e-13 79.0 114 45.6
Rhsim07G0190100 Rhododendron simsii HOM05D002454 ORTHO05D002581 2.9e-13 79.0 114 49.1
Cc02_g34220 Coffea canephora HOM05D002454 ORTHO05D002581 3.8e-13 78.6 106 46.2
Ah.06g189860 Amaranthus hybridus HOM05D002454 ORTHO05D002581 4.9e-13 78.2 115 47.8
MD04G1199400 Malus domestica HOM05D002454 ORTHO05D002581 4.9e-13 78.2 102 50.0
BcaNung04751 Brassica carinata HOM05D002454 ORTHO05D002581 6.4e-13 77.8 105 47.6
BraA06t26657Z Brassica rapa HOM05D002454 ORTHO05D002581 6.4e-13 77.8 105 47.6
Hma1.2p1_1292F.1_g273860 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 8.4e-13 77.4 131 45.0
Hma1.2p1_1292F.1_g273861 Hydrangea macrophylla HOM05D002454 ORTHO05D002581 8.4e-13 77.4 131 45.0
Oeu017262.1 Olea europaea HOM05D002454 ORTHO05D002581 8.4e-13 77.4 113 46.9
BcaC03g17802 Brassica carinata HOM05D002454 ORTHO05D002581 1.1e-12 77.0 105 47.6
BolC2t11893H Brassica oleracea HOM05D002454 ORTHO05D002581 1.1e-12 77.0 105 47.6
CARHR186270 Cardamine hirsuta HOM05D002454 ORTHO05D002581 1.1e-12 77.0 105 46.7
MD12G1212200 Malus domestica HOM05D002454 ORTHO05D002581 1.1e-12 77.0 103 49.5
Sp2g20920 Schrenkiella parvula HOM05D002454 ORTHO05D002581 1.1e-12 77.0 105 47.6
TWI12G0909 Tripterygium wilfordii HOM05D002454 ORTHO05D002581 1.1e-12 77.0 114 45.6
BcaB07g34201 Brassica carinata HOM05D002454 ORTHO05D002581 1.4e-12 76.6 105 46.7
Duzib177G0919 Durio zibethinus HOM05D002454 ORTHO05D002581 1.4e-12 76.6 114 45.6
ECA236G1977 Erigeron canadensis HOM05D002454 ORTHO05D002581 1.4e-12 76.6 110 45.5
A02p38750 Brassica napus HOM05D002454 ORTHO05D002581 2.4e-12 75.9 105 46.7
Cpa.g.sc327.6 Carica papaya HOM05D002454 ORTHO05D002581 2.4e-12 75.9 114 44.7
THA.LOC104802794 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 2.4e-12 75.9 114 46.5
TPR.G17721 Trifolium pratense HOM05D002454 ORTHO05D002581 2.4e-12 75.9 101 47.5
Zm00001eb245840 Zea mays HOM05D002454 ORTHO05D002581 3.2e-12 75.5 121 41.3
CDE02G0786 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 4.2e-12 75.1 112 49.1
PGSC0003DMG400024718 Solanum tuberosum HOM05D002454 ORTHO05D002581 5.4e-12 74.7 104 47.1
Os07g0673900 Oryza sativa ssp. japonica HOM05D002454 ORTHO05D002581 7.1e-12 74.3 112 47.3
DCAR_027067 Daucus carota HOM05D002454 ORTHO05D002581 9.3e-12 73.9 104 49.0
Thhalv10005192m.g Eutrema salsugineum HOM05D002454 ORTHO05D002581 9.3e-12 73.9 105 44.8
Mapoly0182s0019 Marchantia polymorpha HOM05D002454 ORTHO05D002581 9.3e-12 73.9 104 49.0
Carub.0003s0485 Capsella rubella HOM05D002454 ORTHO05D002581 1.2e-11 73.6 115 48.7
CARHR079950 Cardamine hirsuta HOM05D002454 ORTHO05D002581 2.7e-11 72.4 115 47.8
Aa31LG5G15820 Aethionema arabicum HOM05D002454 ORTHO05D002581 3.5e-11 72.0 115 48.7
AL3G16170 Arabidopsis lyrata HOM05D002454 ORTHO05D002581 3.5e-11 72.0 115 47.8
CDE09G0549 Ceratophyllum demersum HOM05D002454 ORTHO05D002581 3.5e-11 72.0 99 50.5
THA.LOC104818724 Tarenaya hassleriana HOM05D002454 ORTHO05D002581 3.5e-11 72.0 115 47.8
QL03p020088 Quercus lobata HOM05D002454 ORTHO05D002581 4.6e-11 71.6 120 46.7
Lalb_Chr06g0167731 Lupinus albus HOM05D002454 ORTHO05D002581 6.0e-11 71.2 95 49.5
AT3G05550 Arabidopsis thaliana HOM05D002454 ORTHO05D002581 1.0e-10 70.5 115 47.0
Os02g0592400 Oryza sativa ssp. japonica HOM05D002454 ORTHO05D002581 1.0e-10 70.5 113 40.7
Sp3g04400 Schrenkiella parvula HOM05D002454 ORTHO05D002581 1.3e-10 70.1 115 46.1
Ca_10141_v3 Cicer arietinum L. HOM05D002454 ORTHO05D002581 1.8e-10 69.7 97 50.5
Glyma.20G236900 Glycine max HOM05D002454 ORTHO05D002581 1.8e-10 69.7 97 49.5
Lj5g0022176 Lotus japonicus HOM05D002454 ORTHO05D002581 1.8e-10 69.7 96 50.0
FvH4_6g06640 Fragaria vesca HOM05D002454 ORTHO05D002581 2.3e-10 69.3 100 44.0
FAN14G3867 Fragaria x ananassa HOM05D002454 ORTHO05D002581 2.3e-10 69.3 100 44.0
Glyma.10G151300 Glycine max HOM05D002454 ORTHO05D002581 2.3e-10 69.3 98 44.9
SEGI_24572 Sequoiadendron giganteum HOM05D002454 ORTHO05D002581 2.3e-10 69.3 112 41.1
Sc09g0002920 Simmondsia chinensis HOM05D002454 ORTHO05D002581 2.3e-10 69.3 116 46.6
Sc19g0005280 Simmondsia chinensis HOM05D002454 ORTHO05D002581 3.0e-10 68.9 44 79.5
Lalb_Chr02g0148071 Lupinus albus HOM05D002454 ORTHO05D002581 3.9e-10 68.6 96 49.0
Medtr1g083420 Medicago truncatula HOM05D002454 ORTHO05D002581 3.9e-10 68.6 98 49.0
MSTRG.20409 Avicennia marina HOM05D002454 ORTHO05D002581 5.1e-10 68.2 97 45.4
AUR62000754 Chenopodium quinoa HOM05D002454 ORTHO05D002581 5.1e-10 68.2 113 46.9
Solyc01g099820.3 Solanum lycopersicum HOM05D002454 ORTHO05D002581 5.1e-10 68.2 104 43.3
Sopen01g043330 Solanum pennellii HOM05D002454 ORTHO05D002581 5.1e-10 68.2 104 43.3
FAN02G0394 Fragaria x ananassa HOM05D002454 ORTHO05D002581 6.7e-10 67.8 100 43.0
FAN05G1278 Fragaria x ananassa HOM05D002454 ORTHO05D002581 6.7e-10 67.8 100 43.0
FAN09G3878 Fragaria x ananassa HOM05D002454 ORTHO05D002581 6.7e-10 67.8 100 44.0
Sopen00g005600 Solanum pennellii HOM05D002454 ORTHO05D002581 6.7e-10 67.8 104 43.3
Cfa006636 Carpinus fangiana HOM05D002454 ORTHO05D002581 8.7e-10 67.4 46 76.1
arahy.Tifrunner.gnm1.ann1.0W5UIW Arachis hypogaea HOM05D002454 ORTHO05D002581 1.1e-09 67.0 101 50.5
RcHm_v2.0_Chr3g0455841 Rosa chinensis HOM05D002454 ORTHO05D002581 1.1e-09 67.0 99 41.4
TWI36G0108 Tripterygium wilfordii HOM05D002454 ORTHO05D002581 1.1e-09 67.0 103 44.7
Zm00001eb183530 Zea mays HOM05D002454 ORTHO05D002581 1.1e-09 67.0 112 42.0
Lalb_Chr21g0310561 Lupinus albus HOM05D002454 ORTHO05D002581 1.9e-09 66.2 99 48.5
Sc19g0005380 Simmondsia chinensis HOM05D002454 ORTHO05D002581 1.9e-09 66.2 46 78.3
arahy.Tifrunner.gnm1.ann1.QD5JHM Arachis hypogaea HOM05D002454 ORTHO05D002581 3.3e-09 65.5 101 49.5
Nitab4.5_0003985g0020 Nicotiana tabacum HOM05D002454 ORTHO05D002581 3.3e-09 65.5 115 45.2
Phvul.007G197500 Phaseolus vulgaris HOM05D002454 ORTHO05D002581 3.3e-09 65.5 97 48.5
Hund21716 Selenicereus undatus HOM05D002454 ORTHO05D002581 3.3e-09 65.5 115 40.9
CAN.G1459.20 Capsicum annuum HOM05D002454 ORTHO05D002581 4.3e-09 65.1 101 44.6
HPP92_019157 Vanilla planifolia HOM05D002454 ORTHO05D002581 4.3e-09 65.1 114 39.5
Zm00001eb111350 Zea mays HOM05D002454 ORTHO05D002581 4.3e-09 65.1 103 47.6
vmacro15225 Vaccinium macrocarpon HOM05D002454 ORTHO05D002581 5.6e-09 64.7 46 76.1
Psat6g150840 Pisum sativum HOM05D002454 ORTHO05D002581 4.8e-08 61.6 99 42.4
Pp3c8_8060 Physcomitrium patens HOM05D002454 ORTHO05D002581 8.1e-08 60.8 92 43.5
Hund07103 Selenicereus undatus HOM05D002454 ORTHO05D002581 1.8e-07 59.7 113 43.4
Pp3c23_8640 Physcomitrium patens HOM05D002454 ORTHO05D002581 2.4e-07 59.3 93 43.0
Dinv30821 Davidia involucrata HOM05D046959 ORTHO05D002581 3.1e-07 58.9 57 61.4
EL10Ac4g09906 Beta vulgaris HOM05D002454 ORTHO05D002581 4.0e-07 58.5 116 42.2
AagrBONN_evm.TU.Sc2ySwM_362.2105 Anthoceros agrestis HOM05D002454 ORTHO05D002581 5.3e-07 58.2 54 59.3
BolC7t44640H Brassica oleracea HOM05D002454 ORTHO05D002581 9.0e-07 57.4 40 75.0
A06p37350 Brassica napus HOM05D001900 ORTHO05D003003 1.2e-06 57.0 59 57.6
C02p58260 Brassica napus HOM05D001900 ORTHO05D003003 1.2e-06 57.0 59 57.6
C07p41110 Brassica napus HOM05D001900 ORTHO05D003003 1.2e-06 57.0 59 57.6
Nitab4.5_0005783g0050 Nicotiana tabacum HOM05D002454 ORTHO05D002581 2.6e-06 55.8 57 56.1
A02p38900 Brassica napus HOM05D002454 ORTHO05D002581 5.8e-06 54.7 37 75.7


User provided reference genes

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