Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002760g0060 Nicotiana tabacum HOM05D004168 ORTHO05D004999 3.3e-152 541.6 258 100.0
Nitab4.5_0000287g0250 Nicotiana tabacum HOM05D004168 ORTHO05D004999 2.4e-142 508.8 259 92.3
PGSC0003DMG401007971 Solanum tuberosum HOM05D004168 ORTHO05D004999 1.1e-131 473.4 256 87.5
Sopen04g032490 Solanum pennellii HOM05D004168 ORTHO05D004999 1.5e-131 473.0 259 85.7
Solyc04g078890.4 Solanum lycopersicum HOM05D004168 ORTHO05D004999 3.6e-130 468.4 259 84.6
CAN.G1030.1 Capsicum annuum HOM05D004168 ORTHO05D004999 4.0e-121 438.3 260 81.5
Peaxi162Scf00252g00056 Petunia axillaris HOM05D004168 ORTHO05D004999 1.3e-119 433.3 261 80.5
Lj4A773T42 Lonicera japonica HOM05D004168 ORTHO05D004999 7.0e-102 374.4 259 68.7
Cc10_g04130 Coffea canephora HOM05D004168 ORTHO05D004999 6.8e-97 357.8 269 67.3
Oeu043572.2 Olea europaea HOM05D004168 ORTHO05D004999 8.9e-97 357.5 259 66.8
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 7.5e-96 354.4 259 66.4
Rhsim06G0050100 Rhododendron simsii HOM05D004168 ORTHO05D004999 4.9e-95 351.7 260 66.5
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 6.4e-95 351.3 258 67.4
vmacro21519 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.4e-94 350.1 258 66.3
CSS0013402 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 4.1e-94 348.6 258 67.4
CSS0011562 Camellia sinensis var. sinensis HOM05D004168 ORTHO05D004999 7.1e-94 347.8 258 67.4
TAR628G1263 Trochodendron aralioides HOM05D004168 ORTHO05D004999 9.2e-94 347.4 265 66.8
MSTRG.1350 Avicennia marina HOM05D004168 ORTHO05D004999 3.5e-93 345.5 259 64.9
Eucgr.F00224 Eucalyptus grandis HOM05D004168 ORTHO05D004999 8.6e-92 340.9 261 63.2
Potri.002G126000 Populus trichocarpa HOM05D004168 ORTHO05D004999 1.1e-91 340.5 259 64.1
Sc02g0007150 Simmondsia chinensis HOM05D004168 ORTHO05D004999 1.5e-91 340.1 259 66.4
Manes.05G174100 Manihot esculenta HOM05D004168 ORTHO05D004999 4.3e-91 338.6 256 64.8
TAR376G0672 Trochodendron aralioides HOM05D004168 ORTHO05D004999 4.3e-91 338.6 262 66.4
COL.COLO4_26513 Corchorus olitorius HOM05D004168 ORTHO05D004999 2.1e-90 336.3 264 64.0
Migut.C00576 Erythranthe guttata HOM05D004168 ORTHO05D004999 2.1e-90 336.3 261 62.5
Rhsim07G0228300 Rhododendron simsii HOM05D004168 ORTHO05D004999 4.7e-90 335.1 259 62.9
Manes.18G037500 Manihot esculenta HOM05D004168 ORTHO05D004999 6.2e-90 334.7 256 64.1
Dinv35958 Davidia involucrata HOM05D004168 ORTHO05D004999 4.0e-89 332.0 247 67.2
Gohir.A05G202600 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.2e-88 330.5 261 59.8
PGR083G0647 Punica granatum HOM05D004168 ORTHO05D004999 1.2e-88 330.5 263 62.7
MBI15_g10497_MAGBIO Magnolia biondii HOM05D004168 ORTHO05D004999 1.5e-88 330.1 258 65.1
Lsat_1_v5_gn_1_21041 Lactuca sativa HOM05D004168 ORTHO05D004999 4.4e-88 328.6 260 60.4
Hund06209 Selenicereus undatus HOM05D004168 ORTHO05D004999 4.4e-88 328.6 254 63.8
Gohir.D05G205800 Gossypium hirsutum HOM05D004168 ORTHO05D004999 5.8e-88 328.2 261 59.8
CsaV3_4G034330 Cucumis sativus L. HOM05D004168 ORTHO05D004999 9.9e-88 327.4 262 59.5
Aqoxy1G00522 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 1.3e-87 327.0 256 64.8
Gorai.009G212100 Gossypium raimondii HOM05D004168 ORTHO05D004999 2.9e-87 325.9 261 59.0
Sabra02G0098700 Salix brachista HOM05D004168 ORTHO05D004999 2.9e-87 325.9 259 60.6
GSVIVG01009491001 Vitis vinifera HOM05D004168 ORTHO05D004999 2.9e-87 325.9 258 62.0
SGA_v2.0_scaffold14G07004 Striga asiatica HOM05D004168 ORTHO05D004999 8.4e-87 324.3 252 60.7
CANSAT25G0219 Cannabis sativa HOM05D004168 ORTHO05D004999 1.1e-86 323.9 265 63.0
DCAR_012778 Daucus carota HOM05D004168 ORTHO05D004999 1.1e-86 323.9 249 62.7
Thecc.08G006900 Theobroma cacao HOM05D004168 ORTHO05D004999 1.1e-86 323.9 261 62.5
AL7G36940 Arabidopsis lyrata HOM05D004168 ORTHO05D004999 1.9e-86 323.2 261 60.9
Ciclev10002229m.g Citrus clementina HOM05D004168 ORTHO05D004999 4.1e-86 322.0 264 62.9
PSO384G0569 Papaver somniferum HOM05D004168 ORTHO05D004999 5.4e-86 321.6 256 63.3
Duzib116G0163 Durio zibethinus HOM05D004168 ORTHO05D004999 7.1e-86 321.2 266 60.9
TWI36G1266 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 7.1e-86 321.2 216 69.4
ClCG05G019900 Citrullus lanatus HOM05D004168 ORTHO05D004999 9.2e-86 320.9 255 60.0
HanXRQChr02g0039451 Helianthus annuus HOM05D004168 ORTHO05D004999 9.2e-86 320.9 274 58.8
DCAR_019452 Daucus carota HOM05D004168 ORTHO05D004999 1.2e-85 320.5 251 62.2
QL12p001799 Quercus lobata HOM05D004168 ORTHO05D004999 1.6e-85 320.1 177 80.2
AT4G17650 Arabidopsis thaliana HOM05D004168 ORTHO05D004999 2.1e-85 319.7 261 60.5
GSVIVG01024177001 Vitis vinifera HOM05D004168 ORTHO05D004999 4.6e-85 318.5 189 76.7
FAN20G1800 Fragaria x ananassa HOM05D004168 ORTHO05D004999 7.8e-85 317.8 224 68.3
Gorai.010G019900 Gossypium raimondii HOM05D004168 ORTHO05D004999 1.3e-84 317.0 261 59.0
Os01g0772400 Oryza sativa ssp. japonica HOM05D004168 ORTHO05D004999 1.3e-84 317.0 214 69.6
MD08G1101200 Malus domestica HOM05D004168 ORTHO05D004999 1.7e-84 316.6 260 63.8
EL10As14g24078 Beta vulgaris HOM05D004168 ORTHO05D004999 2.3e-84 316.2 256 60.9
Hund00296 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.3e-84 316.2 251 61.8
Hund00303 Selenicereus undatus HOM05D004168 ORTHO05D004999 2.3e-84 316.2 251 61.8
CiPaw.12G069100 Carya illinoinensis HOM05D004168 ORTHO05D004999 3.0e-84 315.8 221 67.4
Sp7g16490 Schrenkiella parvula HOM05D004168 ORTHO05D004999 3.9e-84 315.5 264 60.6
ECA247G0458 Erigeron canadensis HOM05D004168 ORTHO05D004999 5.1e-84 315.1 262 59.9
Prupe.1G435200 Prunus persica HOM05D004168 ORTHO05D004999 6.6e-84 314.7 261 61.3
arahy.Tifrunner.gnm1.ann1.TVNS6S Arachis hypogaea HOM05D004168 ORTHO05D004999 8.6e-84 314.3 263 61.2
AUR62016672 Chenopodium quinoa HOM05D004168 ORTHO05D004999 8.6e-84 314.3 256 62.1
Gohir.D06G017000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 8.6e-84 314.3 261 58.2
HPP92_018641 Vanilla planifolia HOM05D004168 ORTHO05D004999 1.1e-83 313.9 219 72.1
CARHR224370 Cardamine hirsuta HOM05D004168 ORTHO05D004999 1.5e-83 313.5 261 61.3
FvH4_2g34410 Fragaria vesca HOM05D004168 ORTHO05D004999 1.5e-83 313.5 223 67.7
FAN24G2672 Fragaria x ananassa HOM05D004168 ORTHO05D004999 1.5e-83 313.5 223 67.7
Carub.0007s2373 Capsella rubella HOM05D004168 ORTHO05D004999 1.9e-83 313.2 265 60.0
AUR62011389 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.9e-83 313.2 219 69.4
unitig_19.g30012 Utricularia gibba HOM05D004168 ORTHO05D004999 3.3e-83 312.4 184 76.1
unitig_8.g5020 Utricularia gibba HOM05D004168 ORTHO05D004999 3.3e-83 312.4 184 76.1
FAN15G2652 Fragaria x ananassa HOM05D004168 ORTHO05D004999 5.6e-83 311.6 263 61.2
THA.LOC104812820 Tarenaya hassleriana HOM05D004168 ORTHO05D004999 7.3e-83 311.2 262 59.5
Aa31LG6G400 Aethionema arabicum HOM05D004168 ORTHO05D004999 9.6e-83 310.8 261 59.8
DCAR_008795 Daucus carota HOM05D004168 ORTHO05D004999 9.6e-83 310.8 259 57.5
EL10Ac9g21781 Beta vulgaris HOM05D004168 ORTHO05D004999 2.8e-82 309.3 253 60.5
Ah.01g019770 Amaranthus hybridus HOM05D004168 ORTHO05D004999 4.7e-82 308.5 218 67.0
RcHm_v2.0_Chr6g0307961 Rosa chinensis HOM05D004168 ORTHO05D004999 4.7e-82 308.5 259 60.6
Sed0009126 Sechium edule HOM05D004168 ORTHO05D004999 8.1e-82 307.8 293 52.9
C01p11320 Brassica napus HOM05D004168 ORTHO05D004999 1.1e-81 307.4 261 57.5
PGR031G2881 Punica granatum HOM05D004168 ORTHO05D004999 1.1e-81 307.4 261 60.2
arahy.Tifrunner.gnm1.ann1.85Q9C5 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.4e-81 307.0 259 60.2
TWI56G0083 Tripterygium wilfordii HOM05D004168 ORTHO05D004999 4.0e-81 305.4 247 59.1
CiPaw.11G099200 Carya illinoinensis HOM05D004168 ORTHO05D004999 6.8e-81 304.7 223 63.7
BraA01t00914Z Brassica rapa HOM05D004168 ORTHO05D004999 8.9e-81 304.3 262 56.5
Thhalv10026045m.g Eutrema salsugineum HOM05D004168 ORTHO05D004999 8.9e-81 304.3 264 58.0
arahy.Tifrunner.gnm1.ann1.IT5IHR Arachis hypogaea HOM05D004168 ORTHO05D004999 1.2e-80 303.9 259 60.2
Sed0010101 Sechium edule HOM05D004168 ORTHO05D004999 1.2e-80 303.9 264 55.7
VMungo1309G0269 Vigna mungo HOM05D004168 ORTHO05D004999 1.2e-80 303.9 258 58.9
BcaC09g51623 Brassica carinata HOM05D004168 ORTHO05D004999 1.5e-80 303.5 261 58.6
Cpa.g.sc13.291 Carica papaya HOM05D004168 ORTHO05D004999 1.5e-80 303.5 180 74.4
Glyma.04G039100 Glycine max HOM05D004168 ORTHO05D004999 1.5e-80 303.5 259 58.3
Glyma.06G040100 Glycine max HOM05D004168 ORTHO05D004999 1.5e-80 303.5 260 60.0
Lj1g0018004 Lotus japonicus HOM05D004168 ORTHO05D004999 2.6e-80 302.8 265 58.5
BcaB04g18436 Brassica carinata HOM05D004168 ORTHO05D004999 4.4e-80 302.0 258 58.5
BcaNung06715 Brassica carinata HOM05D004168 ORTHO05D004999 4.4e-80 302.0 261 58.2
Medtr3g101750 Medicago truncatula HOM05D004168 ORTHO05D004999 5.8e-80 301.6 265 59.2
TPR.G24157 Trifolium pratense HOM05D004168 ORTHO05D004999 7.6e-80 301.2 257 59.1
HanXRQChr09g0267591 Helianthus annuus HOM05D004168 ORTHO05D004999 9.9e-80 300.8 258 57.8
BolC1t01097H Brassica oleracea HOM05D001479 ORTHO05D001401 1.7e-79 300.1 183 73.8
Ca_15947_v3 Cicer arietinum L. HOM05D004168 ORTHO05D004999 1.7e-79 300.1 265 58.1
A01p09710 Brassica napus HOM05D004168 ORTHO05D004999 8.4e-79 297.7 257 58.4
BcaNung00072 Brassica carinata HOM05D004168 ORTHO05D004999 1.4e-78 297.0 183 73.2
Lsat_1_v5_gn_4_125661 Lactuca sativa HOM05D004168 ORTHO05D004999 1.9e-78 296.6 252 59.5
BraA08t33308Z Brassica rapa HOM05D004168 ORTHO05D004999 7.8e-77 291.2 266 55.6
Psat5g043040 Pisum sativum HOM05D004168 ORTHO05D004999 1.0e-76 290.8 266 57.5
ECA232G1782 Erigeron canadensis HOM05D004168 ORTHO05D004999 1.7e-76 290.0 257 58.0
Aqoxy2G00574 Aquilegia oxysepala HOM05D004168 ORTHO05D004999 3.0e-76 289.3 226 61.5
A08p13270 Brassica napus HOM05D004168 ORTHO05D004999 3.9e-76 288.9 200 67.0
CDE06G0679 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 6.6e-76 288.1 185 71.4
Lalb_Chr23g0267171 Lupinus albus HOM05D004168 ORTHO05D004999 1.5e-75 287.0 174 73.0
MSTRG.22261 Avicennia marina HOM05D004168 ORTHO05D004999 2.5e-75 286.2 257 54.1
Nn2g14539 Nelumbo nucifera HOM05D004168 ORTHO05D004999 6.4e-71 271.6 147 85.0
MD15G1082400 Malus domestica HOM05D004168 ORTHO05D004999 8.4e-71 271.2 260 56.2
CANSAT11G0235 Cannabis sativa HOM05D004168 ORTHO05D004999 9.3e-70 267.7 173 74.0
SalBow7G4699 Salvia bowleyana HOM05D004168 ORTHO05D004999 1.6e-69 266.9 221 59.3
FAN27G1360 Fragaria x ananassa HOM05D004168 ORTHO05D004999 4.6e-69 265.4 150 80.0
Haze_17522 Corylus avellana HOM05D004168 ORTHO05D004999 6.0e-69 265.0 223 61.0
Gohir.A06G018666 Gossypium hirsutum HOM05D004168 ORTHO05D004999 6.0e-69 265.0 261 52.1
MELO3C016753.2 Cucumis melo HOM05D004168 ORTHO05D004999 1.7e-68 263.5 224 56.7
Cfa018557 Carpinus fangiana HOM05D004168 ORTHO05D004999 3.0e-68 262.7 220 61.8
Cfa012532 Carpinus fangiana HOM05D004168 ORTHO05D002421 1.3e-66 257.3 237 56.1
Zm00001eb370050 Zea mays HOM05D004168 ORTHO05D004999 2.4e-65 253.1 137 80.3
BcaC07g38091 Brassica carinata HOM05D004168 ORTHO05D004999 4.0e-65 252.3 183 64.5
Mapoly0004s0036 Marchantia polymorpha HOM05D004168 ORTHO05D004999 1.9e-62 243.4 171 63.7
Phvul.009G065300 Phaseolus vulgaris HOM05D004168 ORTHO05D004999 1.8e-60 236.9 229 54.1
Duzib093G1913 Durio zibethinus HOM05D004168 ORTHO05D004999 1.1e-59 234.2 259 49.0
Eucgr.F02339 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.3e-58 230.7 180 62.2
vmacro04448 Vaccinium macrocarpon HOM05D004168 ORTHO05D004999 1.6e-58 230.3 262 48.5
Eucgr.L02367 Eucalyptus grandis HOM05D004168 ORTHO05D004999 3.7e-58 229.2 268 48.5
SEGI_05154 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 6.2e-58 228.4 143 72.0
AagrBONN_evm.TU.Sc2ySwM_228.4844 Anthoceros agrestis HOM05D004168 ORTHO05D004999 6.9e-57 224.9 170 60.6
Eucgr.F02343 Eucalyptus grandis HOM05D004168 ORTHO05D004999 1.5e-56 223.8 152 69.1
Pp3c21_16730 Physcomitrium patens HOM05D004168 ORTHO05D004999 2.0e-56 223.4 164 61.6
SMO340G0178 Selaginella moellendorffii HOM05D004168 ORTHO05D004999 2.6e-56 223.0 164 59.8
CBR_g66636 Chara braunii HOM05D004168 ORTHO05D004999 1.0e-55 221.1 166 58.4
PSO339G0184 Papaver somniferum HOM05D004168 ORTHO05D004999 2.5e-54 216.5 256 49.2
Pp3c22_1290 Physcomitrium patens HOM05D004168 ORTHO05D004999 2.3e-52 209.9 166 57.8
Lalb_Chr11g0062631 Lupinus albus HOM05D004168 ORTHO05D004999 1.7e-47 193.7 116 74.1
Zm00001eb151870 Zea mays HOM05D004168 ORTHO05D004999 3.0e-36 156.4 90 75.6
SEGI_12997 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 1.1e-35 154.5 93 74.2
arahy.Tifrunner.gnm1.ann1.F8YVUF Arachis hypogaea HOM05D004168 ORTHO05D004999 2.2e-34 150.2 143 53.8
arahy.Tifrunner.gnm1.ann1.ZKL3GY Arachis hypogaea HOM05D004168 ORTHO05D004999 1.3e-31 141.0 84 77.4
AUR62007226 Chenopodium quinoa HOM05D004168 ORTHO05D004999 1.3e-31 141.0 138 52.2
Cre07.g345700 Chlamydomonas reinhardtii HOM05D004168 ORTHO05D004999 1.6e-29 134.0 281 29.5
SEGI_03271 Sequoiadendron giganteum HOM05D004168 ORTHO05D004999 2.7e-29 133.3 85 65.9
arahy.Tifrunner.gnm1.ann1.RZ37P0 Arachis hypogaea HOM05D004168 ORTHO05D004999 2.6e-27 126.7 138 49.3
Oeu049977.1 Olea europaea HOM05D004168 ORTHO05D004999 1.3e-26 124.4 78 78.2
MCO12G423 Micromonas commoda HOM05D004168 ORTHO05D004999 1.8e-25 120.6 141 41.8
Atru.chr13.696 Acer truncatum HOM05D004168 ORTHO05D004999 3.8e-23 112.8 63 81.0
arahy.Tifrunner.gnm1.ann1.H0AX16 Arachis hypogaea HOM05D004168 ORTHO05D004999 1.1e-22 111.3 73 68.5
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 2.5e-22 110.2 65 73.8
arahy.Tifrunner.gnm1.ann1.TNR0C9 Arachis hypogaea HOM05D004168 ORTHO05D004999 5.7e-19 99.0 67 64.2
arahy.Tifrunner.gnm1.ann1.CBC9PR Arachis hypogaea HOM05D004168 ORTHO05D004999 2.7e-16 90.1 86 48.8
Gohir.A06G060332 Gossypium hirsutum HOM05D004168 ORTHO05D004999 1.2e-13 81.3 52 65.4
Lj6g0018320 Lotus japonicus HOM05D004168 ORTHO05D004999 1.4e-12 77.8 46 71.7
Gorai.002G139800 Gossypium raimondii HOM05D004168 ORTHO05D004999 3.4e-11 73.2 52 59.6
Gohir.D01G114560 Gossypium hirsutum HOM05D004168 ORTHO05D004999 7.5e-11 72.0 51 60.8
COL.COLO4_26873 Corchorus olitorius HOM05D004168 ORTHO05D004999 1.1e-09 68.2 39 74.4
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 1.6e-08 64.3 106 40.6
Gohir.D06G118000 Gossypium hirsutum HOM05D004168 ORTHO05D004999 7.7e-08 62.0 43 60.5
MBI15_g33084_MAGBIO Magnolia biondii HOM05D001642 ORTHO05D002129 8.5e-07 58.5 38 71.1
CDE07G0992 Ceratophyllum demersum HOM05D004168 ORTHO05D004999 2.5e-06 57.0 39 64.1


User provided reference genes

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