Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002756g0130 Nicotiana tabacum HOM05D004089 ORTHO05D004687 1.1e-35 152.9 82 100.0
Solyc03g115690.1 Solanum lycopersicum HOM05D004089 ORTHO05D004687 5.8e-10 67.4 39 94.9
Sopen03g034670 Solanum pennellii HOM05D004089 ORTHO05D004687 5.8e-10 67.4 39 94.9
PGSC0003DMG400024664 Solanum tuberosum HOM05D004089 ORTHO05D004687 5.8e-10 67.4 39 94.9
Lj5P107T92 Lonicera japonica HOM05D004089 ORTHO05D004687 2.2e-09 65.5 41 85.4
Prupe.5G198800 Prunus persica HOM05D004089 ORTHO05D004687 5.0e-09 64.3 41 82.9
Peaxi162Scf00274g10024 Petunia axillaris HOM05D004089 ORTHO05D004687 8.4e-09 63.5 41 85.4
QL10p017912 Quercus lobata HOM05D004089 ORTHO05D004687 1.9e-08 62.4 41 80.5
CiPaw.11G047700 Carya illinoinensis HOM05D004089 ORTHO05D004687 2.5e-08 62.0 40 77.5
MD06G1197900 Malus domestica HOM05D004089 ORTHO05D004687 2.5e-08 62.0 41 80.5
Cc04_g14350 Coffea canephora HOM05D004089 ORTHO05D004687 5.5e-08 60.8 41 73.2
MD14G1205500 Malus domestica HOM05D004089 ORTHO05D004687 5.5e-08 60.8 41 80.5
Manes.14G082100 Manihot esculenta HOM05D004089 ORTHO05D004687 5.5e-08 60.8 41 75.6
TAR369G0101 Trochodendron aralioides HOM05D004089 ORTHO05D004687 5.5e-08 60.8 47 68.1
Rhsim08G0151100 Rhododendron simsii HOM05D004089 ORTHO05D004687 7.1e-08 60.5 41 75.6
Thecc.03G094700 Theobroma cacao HOM05D004089 ORTHO05D004687 7.1e-08 60.5 41 75.6
TAR371G1138 Trochodendron aralioides HOM05D004089 ORTHO05D004687 7.1e-08 60.5 47 68.1
MSTRG.11370 Avicennia marina HOM05D004089 ORTHO05D004687 9.3e-08 60.1 56 60.7
Dinv10661 Davidia involucrata HOM05D004089 ORTHO05D004687 9.3e-08 60.1 41 73.2
Duzib068G1131 Durio zibethinus HOM05D004089 ORTHO05D004687 9.3e-08 60.1 41 75.6
TAR626G1449 Trochodendron aralioides HOM05D004089 ORTHO05D004687 9.3e-08 60.1 47 68.1
CSS0014968 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 1.2e-07 59.7 40 75.0
COL.COLO4_00682 Corchorus olitorius HOM05D004089 ORTHO05D004687 1.2e-07 59.7 41 75.6
TAR629G0233 Trochodendron aralioides HOM05D004089 ORTHO05D004687 1.2e-07 59.7 41 70.7
Cpa.g.sc13.300 Carica papaya HOM05D004089 ORTHO05D004687 1.6e-07 59.3 41 68.3
Atru.chr9.325 Acer truncatum HOM05D004089 ORTHO05D004687 2.1e-07 58.9 41 70.7
Oeu006382.1 Olea europaea HOM05D000714 ORTHO05D000544 2.1e-07 58.9 41 75.6
MSTRG.4442 Avicennia marina HOM05D004089 ORTHO05D004687 2.7e-07 58.5 42 66.7
AUR62008468 Chenopodium quinoa HOM05D000001 ORTHO05D011953 4.6e-07 57.8 44 65.9
Duzib205G1783 Durio zibethinus HOM05D004089 ORTHO05D004687 4.6e-07 57.8 41 73.2
Rhsim08G0150900 Rhododendron simsii HOM05D004089 ORTHO05D004687 4.6e-07 57.8 41 70.7
CiPaw.12G011700 Carya illinoinensis HOM05D004089 ORTHO05D004687 6.1e-07 57.4 47 63.8
Rhsim08G0151200 Rhododendron simsii HOM05D004089 ORTHO05D004687 6.1e-07 57.4 40 72.5
ClCG04G012070 Citrullus lanatus HOM05D004089 ORTHO05D004687 7.9e-07 57.0 41 68.3
FvH4_5g14500 Fragaria vesca HOM05D004089 ORTHO05D004687 7.9e-07 57.0 41 70.7
FAN08G0374 Fragaria x ananassa HOM05D004089 ORTHO05D004687 7.9e-07 57.0 41 70.7
FAN13G1369 Fragaria x ananassa HOM05D004089 ORTHO05D004687 7.9e-07 57.0 41 70.7
FAN18G2014 Fragaria x ananassa HOM05D004089 ORTHO05D004687 7.9e-07 57.0 41 70.7
RcHm_v2.0_Chr7g0182161 Rosa chinensis HOM05D004089 ORTHO05D004687 7.9e-07 57.0 41 70.7
Aqoxy3G03505 Aquilegia oxysepala HOM05D004089 ORTHO05D004687 1.0e-06 56.6 47 63.8
Ca_13877_v3 Cicer arietinum L. HOM05D004089 ORTHO05D004687 1.0e-06 56.6 41 65.9
Ciclev10020945m.g Citrus clementina HOM05D004089 ORTHO05D004687 1.0e-06 56.6 41 70.7
Haze_07654 Corylus avellana HOM05D004089 ORTHO05D004687 1.0e-06 56.6 41 70.7
DCAR_026035 Daucus carota HOM05D004089 ORTHO05D004687 1.3e-06 56.2 39 69.2
Potri.015G060900 Populus trichocarpa HOM05D004089 ORTHO05D004687 1.3e-06 56.2 59 54.2
Sed0010910 Sechium edule HOM05D004089 ORTHO05D004687 1.3e-06 56.2 41 68.3
MELO3C002001.2 Cucumis melo HOM05D004089 ORTHO05D004687 1.8e-06 55.8 41 65.9
CsaV3_1G005700 Cucumis sativus L. HOM05D004089 ORTHO05D004687 1.8e-06 55.8 41 65.9
MBI19_g43436_MAGBIO Magnolia biondii HOM05D004089 ORTHO05D004687 1.8e-06 55.8 41 70.7
Manes.06G089200 Manihot esculenta HOM05D004089 ORTHO05D004687 1.8e-06 55.8 41 65.9
Sp2g24550 Schrenkiella parvula HOM05D004089 ORTHO05D004687 1.8e-06 55.8 40 70.0
CSS0037629 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 2.3e-06 55.5 41 68.3
THA.LOC104801435 Tarenaya hassleriana HOM05D004089 ORTHO05D004687 2.3e-06 55.5 39 74.4
TWI81G0628 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 2.3e-06 55.5 41 70.7
BcaB07g29822 Brassica carinata HOM05D004089 ORTHO05D004687 3.0e-06 55.1 41 68.3
Lj9A467G76 Lonicera japonica HOM05D004089 ORTHO05D004687 3.0e-06 55.1 53 60.4
EL10Ac5g11067 Beta vulgaris HOM05D004089 ORTHO05D004687 3.9e-06 54.7 53 54.7
CANSAT80G2067 Cannabis sativa HOM05D004089 ORTHO05D004687 3.9e-06 54.7 42 61.9
Gohir.A11G032333 Gossypium hirsutum HOM05D004089 ORTHO05D004687 3.9e-06 54.7 41 70.7
Gohir.A11G032400 Gossypium hirsutum HOM05D004089 ORTHO05D004687 3.9e-06 54.7 41 70.7
TWI15G0089 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 3.9e-06 54.7 41 70.7
Eucgr.K02492 Eucalyptus grandis HOM05D004089 ORTHO05D004687 5.1e-06 54.3 41 70.7
Glyma.05G024600 Glycine max HOM05D004089 ORTHO05D004687 5.1e-06 54.3 41 65.9
Glyma.17G102700 Glycine max HOM05D004089 ORTHO05D004687 5.1e-06 54.3 41 65.9
Lj4g0011676 Lotus japonicus HOM05D004089 ORTHO05D004687 5.1e-06 54.3 39 69.2
SalBow7G3788 Salvia bowleyana HOM05D004089 ORTHO05D004687 5.1e-06 54.3 39 64.1
BcaB04g19907 Brassica carinata HOM05D004089 ORTHO05D004687 6.7e-06 53.9 40 65.0
Cfa019278 Carpinus fangiana HOM05D004089 ORTHO05D004687 6.7e-06 53.9 41 70.7
Gohir.D07G074900 Gossypium hirsutum HOM05D004089 ORTHO05D004687 6.7e-06 53.9 41 61.0
Gorai.001G079000 Gossypium raimondii HOM05D004089 ORTHO05D004687 6.7e-06 53.9 41 61.0
Nn3g17343 Nelumbo nucifera HOM05D004089 ORTHO05D004687 6.7e-06 53.9 41 68.3
TPR.G12274 Trifolium pratense HOM05D000041 ORTHO05D006140 6.7e-06 53.9 41 63.4
TWI60G1703 Tripterygium wilfordii HOM05D004089 ORTHO05D004687 6.7e-06 53.9 41 68.3
AT5G61340 Arabidopsis thaliana HOM05D004089 ORTHO05D004687 8.7e-06 53.5 40 65.0
arahy.Tifrunner.gnm1.ann1.JX1FK0 Arachis hypogaea HOM05D004089 ORTHO05D004687 8.7e-06 53.5 45 64.4
BcaC03g18095 Brassica carinata HOM05D004089 ORTHO05D004687 8.7e-06 53.5 40 67.5
BolC2t12218H Brassica oleracea HOM05D002313 ORTHO05D003747 8.7e-06 53.5 40 67.5
CSS0014802 Camellia sinensis var. sinensis HOM05D004089 ORTHO05D004687 8.7e-06 53.5 41 68.3
Migut.D01757 Erythranthe guttata HOM05D004089 ORTHO05D004687 8.7e-06 53.5 41 73.2
Medtr4g109020 Medicago truncatula HOM05D004089 ORTHO05D004687 8.7e-06 53.5 45 64.4
Oeu046997.1 Olea europaea HOM05D004089 ORTHO05D004687 8.7e-06 53.5 39 66.7
Phvul.003G187900 Phaseolus vulgaris HOM05D004089 ORTHO05D004687 8.7e-06 53.5 40 67.5


User provided reference genes

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