Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 0.0e+00 1079.3 582 100.0
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 7.5e-293 1010.0 563 96.3
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 4.3e-272 941.0 563 88.5
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 2.9e-268 928.3 564 88.7
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 2.2e-260 902.1 563 86.1
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 1.3e-204 716.8 566 70.8
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 7.4e-200 701.0 566 68.4
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 8.5e-196 687.6 566 66.3
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 1.9e-195 686.4 568 66.2
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 1.0e-193 680.6 562 65.5
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.4e-193 680.2 565 66.5
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 1.8e-193 679.9 585 64.3
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 8.2e-191 671.0 566 65.4
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 1.5e-189 666.8 570 64.7
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 2.0e-189 666.4 403 87.3
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 1.1e-184 650.6 568 63.4
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 3.7e-183 645.6 538 66.5
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 5.9e-181 638.3 566 60.8
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 1.7e-180 636.7 550 61.5
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 3.8e-180 635.6 566 62.0
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 2.5e-179 632.9 547 61.6
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 2.7e-178 629.4 556 61.3
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 3.6e-178 629.0 564 62.8
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 3.0e-177 625.9 564 60.8
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 4.0e-177 625.5 610 59.0
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 5.2e-177 625.2 564 60.1
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 1.5e-176 623.6 566 59.4
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 2.0e-176 623.2 568 59.2
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 3.3e-176 622.5 553 60.9
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 7.5e-176 621.3 558 60.8
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 4.8e-175 618.6 567 60.1
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 6.3e-175 618.2 565 59.6
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 3.1e-174 615.9 545 61.8
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 7.0e-174 614.8 570 59.1
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 7.0e-174 614.8 526 63.1
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 2.0e-173 613.2 565 59.1
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 4.5e-173 612.1 565 59.3
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 1.7e-172 610.1 546 60.3
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 8.5e-172 607.8 565 59.5
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 2.5e-171 606.3 554 58.7
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 4.2e-171 605.5 582 58.1
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 3.6e-170 602.4 576 57.8
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 1.4e-169 600.5 546 59.7
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 1.8e-169 600.1 564 57.3
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 2.3e-169 599.7 546 60.3
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.0e-169 599.4 546 60.1
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 3.0e-169 599.4 570 59.3
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.2e-169 598.6 567 58.6
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 5.2e-169 598.6 546 59.2
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 1.2e-168 597.4 566 59.5
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 3.4e-168 595.9 578 58.0
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 3.4e-168 595.9 564 57.3
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 4.4e-168 595.5 554 58.1
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 4.4e-168 595.5 554 58.7
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 9.8e-168 594.3 564 57.4
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 9.8e-168 594.3 554 57.9
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 1.3e-167 594.0 550 58.9
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 1.3e-167 594.0 567 58.7
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 1.7e-167 593.6 554 57.9
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 2.2e-167 593.2 554 58.5
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 3.1e-166 589.3 564 58.2
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 4.1e-166 589.0 614 55.9
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 4.1e-166 589.0 567 56.3
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 1.6e-165 587.0 554 57.8
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 1.6e-165 587.0 564 56.7
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 2.7e-165 586.3 554 57.4
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 2.7e-165 586.3 554 58.3
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 4.5e-165 585.5 557 58.0
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 5.9e-165 585.1 558 57.9
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 1.3e-164 583.9 565 57.3
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 3.8e-164 582.4 576 56.1
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.5e-164 581.6 565 57.9
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 1.5e-163 580.5 584 55.3
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 3.2e-163 579.3 554 57.0
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 1.4e-161 573.9 572 57.9
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 3.4e-160 569.3 564 55.7
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 5.7e-160 568.5 555 55.3
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 1.3e-159 567.4 565 54.5
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 6.3e-159 565.1 555 54.8
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 5.4e-158 562.0 555 55.3
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 2.9e-156 556.2 551 55.5
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 4.7e-154 548.9 475 61.3
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 1.8e-153 547.0 551 54.4
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 3.0e-153 546.2 551 54.4
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 6.8e-153 545.0 549 55.0
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 1.2e-152 544.3 550 54.2
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 2.0e-152 543.5 551 54.4
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 2.0e-152 543.5 551 54.4
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 2.0e-152 543.5 551 54.4
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 3.4e-152 542.7 551 54.4
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 3.4e-152 542.7 564 52.5
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.7e-152 542.0 577 54.1
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 9.8e-152 541.2 552 53.6
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 1.3e-151 540.8 546 54.6
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 2.9e-151 539.7 551 54.3
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 6.4e-151 538.5 551 54.1
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 1.1e-150 537.7 551 53.9
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 5.0e-148 528.9 552 53.3
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 5.0e-148 528.9 433 65.6
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 3.1e-145 519.6 527 55.4
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 1.5e-144 517.3 557 53.1
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 4.1e-142 509.2 433 63.0
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 7.3e-139 498.4 564 51.2
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 9.2e-134 481.5 566 52.3
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 1.9e-131 473.8 400 65.5
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 7.6e-128 461.8 435 57.2
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 1.1e-126 458.0 573 45.9
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 3.2e-126 456.4 421 59.1
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 2.7e-125 453.4 565 46.5
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 4.6e-125 452.6 556 46.8
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 1.1e-121 441.4 568 45.4
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 1.3e-111 407.9 565 44.2
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 2.1e-109 400.6 554 43.5
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 1.3e-108 397.9 565 43.0
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 7.4e-107 392.1 564 44.1
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 6.2e-106 389.0 532 43.6
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 3.4e-104 383.3 361 57.9
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 1.9e-102 377.5 564 40.6
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 9.3e-94 348.6 299 62.2
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 1.3e-82 311.6 326 54.0
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 2.1e-69 267.7 429 41.7
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 2.9e-63 247.3 228 62.3
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 2.5e-62 244.2 278 48.9
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 4.4e-59 233.4 450 35.1
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 6.5e-55 219.5 202 59.4
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 5.0e-47 193.4 252 45.2
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 2.1e-45 188.0 260 43.5
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 4.9e-42 176.8 136 66.9
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 1.2e-40 172.2 203 50.7
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 5.9e-40 169.9 135 66.7
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 6.6e-39 166.4 236 47.5
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 4.3e-38 163.7 346 37.3
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 2.0e-35 154.8 306 38.6
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.9e-34 151.0 133 59.4
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 3.7e-34 150.6 262 38.5
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 4.7e-29 133.7 134 61.2
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 1.8e-28 131.7 187 43.9
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 4.6e-24 117.1 636 24.1
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 8.6e-23 112.8 132 49.2
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 1.9e-22 111.7 148 45.3
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 4.0e-20 104.0 97 57.7
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 2.7e-16 91.3 75 62.7
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.6e-16 90.5 135 43.0
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.3e-15 89.0 132 40.9
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.3e-15 88.2 132 42.4
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 1.1e-14 85.9 115 47.0
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 3.3e-14 84.3 78 56.4
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.1e-13 81.6 82 54.9
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 2.8e-13 81.3 78 53.8
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 1.2e-11 75.9 64 60.9
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.0e-11 75.1 66 60.6
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 2.1e-08 65.1 66 53.0
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 3.5e-08 64.3 62 53.2
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 2.3e-07 61.6 57 63.2
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 3.3e-06 57.8 135 34.1
A08p02990 Brassica napus HOM05D004114 ORTHO05D004667 5.6e-06 57.0 74 39.2


User provided reference genes

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