Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 4.8e-123 444.5 225 100.0
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.3e-120 436.4 225 97.3
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 3.3e-95 352.1 217 81.1
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 4.3e-95 351.7 217 81.1
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 8.9e-93 344.0 217 80.2
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 6.4e-91 337.8 216 81.5
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 1.8e-85 319.7 223 76.2
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 1.2e-76 290.4 224 64.7
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 2.9e-75 285.8 227 63.0
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 2.1e-73 279.6 225 63.1
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 2.3e-72 276.2 228 62.7
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 3.0e-72 275.8 228 61.8
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 3.0e-72 275.8 229 61.1
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 6.6e-72 274.6 226 62.4
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 2.5e-71 272.7 228 61.4
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 5.6e-71 271.6 228 61.0
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 5.6e-71 271.6 226 63.3
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 1.6e-70 270.0 228 62.7
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 2.8e-70 269.2 226 58.4
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 3.6e-70 268.9 228 61.4
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 4.7e-70 268.5 223 61.9
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 1.1e-69 267.3 226 61.9
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 1.1e-69 267.3 228 60.5
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 4.0e-69 265.4 225 61.8
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 5.2e-69 265.0 228 61.0
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 8.9e-69 264.2 223 61.4
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 2.0e-68 263.1 227 60.4
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.6e-68 262.7 229 60.3
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 2.6e-68 262.7 229 60.3
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 2.6e-68 262.7 224 61.2
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 2.6e-68 262.7 228 61.4
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 3.4e-68 262.3 222 60.8
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 3.4e-68 262.3 231 59.7
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 3.4e-68 262.3 230 60.9
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 4.4e-68 261.9 229 60.7
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.3e-67 260.4 227 59.5
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.7e-67 260.0 229 59.0
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 2.2e-67 259.6 227 59.9
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 3.8e-67 258.8 226 61.5
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 3.8e-67 258.8 229 57.6
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 4.9e-67 258.5 224 62.1
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 6.4e-67 258.1 227 58.6
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 8.4e-67 257.7 223 59.2
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 8.4e-67 257.7 227 58.1
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 1.4e-66 256.9 232 59.1
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 1.9e-66 256.5 229 58.5
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 2.4e-66 256.1 224 60.7
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 2.4e-66 256.1 222 61.7
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.2e-66 255.8 229 58.5
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 3.2e-66 255.8 231 59.7
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 3.2e-66 255.8 227 60.8
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 5.4e-66 255.0 226 59.7
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 9.3e-66 254.2 228 60.1
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 9.3e-66 254.2 229 58.1
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 9.3e-66 254.2 229 59.0
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 9.3e-66 254.2 219 62.1
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.1e-65 253.1 228 57.9
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 3.5e-65 252.3 229 57.6
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 7.8e-65 251.1 229 58.5
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 1.7e-64 250.0 229 57.2
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 2.3e-64 249.6 240 56.7
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 2.3e-64 249.6 228 56.6
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 2.3e-64 249.6 232 56.5
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 4.3e-63 245.4 228 56.1
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 5.6e-63 245.0 236 56.8
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 9.6e-63 244.2 228 57.0
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 4.8e-62 241.9 222 55.9
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 6.9e-61 238.0 227 55.5
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 6.9e-61 238.0 225 56.9
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 5.8e-60 235.0 216 56.9
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 7.6e-60 234.6 229 53.3
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.3e-59 233.8 223 53.8
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 2.2e-59 233.0 214 57.5
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 2.2e-59 233.0 231 55.4
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 2.9e-59 232.6 227 53.3
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 2.9e-59 232.6 222 54.5
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 3.8e-59 232.3 222 54.5
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 4.9e-59 231.9 226 55.8
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 6.4e-59 231.5 225 55.1
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 6.4e-59 231.5 217 55.8
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 6.4e-59 231.5 227 55.5
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 1.1e-58 230.7 222 53.2
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.4e-58 230.3 224 55.8
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.4e-58 230.3 229 53.7
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 9.3e-58 227.6 218 55.0
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 1.2e-57 227.3 216 55.1
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.6e-57 226.9 234 53.0
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.1e-57 226.5 227 54.6
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 2.1e-57 226.5 227 55.1
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 2.7e-57 226.1 227 55.1
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 6.0e-57 224.9 223 52.9
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 7.9e-57 224.6 225 52.0
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 5.1e-56 221.9 229 53.7
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 8.7e-56 221.1 220 52.3
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 4.3e-55 218.8 226 51.3
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 4.3e-55 218.8 214 53.7
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 5.6e-55 218.4 216 54.6
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 9.6e-55 217.6 224 52.7
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 9.6e-55 217.6 222 54.1
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 9.6e-55 217.6 222 54.1
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 1.3e-54 217.2 223 52.5
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 1.6e-54 216.9 222 52.7
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 1.6e-54 216.9 222 52.3
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 1.6e-54 216.9 222 52.7
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 1.6e-54 216.9 222 52.7
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 2.8e-54 216.1 206 57.8
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 8.1e-54 214.5 227 50.2
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 8.1e-54 214.5 216 51.9
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 1.1e-53 214.2 221 49.8
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 2.4e-53 213.0 217 53.0
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 5.3e-53 211.8 219 51.1
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 6.9e-53 211.5 217 50.2
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 9.0e-53 211.1 222 52.7
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 7.6e-52 208.0 229 48.5
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 7.6e-52 208.0 217 51.2
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 9.9e-52 207.6 224 51.8
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 1.3e-51 207.2 236 49.2
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 1.3e-51 207.2 229 48.9
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 2.2e-51 206.5 222 50.0
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 2.9e-51 206.1 224 50.9
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 3.8e-51 205.7 228 50.4
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 3.8e-51 205.7 222 50.0
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 3.8e-51 205.7 188 56.4
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 4.9e-51 205.3 221 49.8
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 8.4e-51 204.5 253 47.4
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 1.4e-50 203.8 223 51.1
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 2.4e-50 203.0 168 59.5
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 9.3e-50 201.1 222 49.5
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 4.6e-49 198.7 142 64.1
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 6.0e-49 198.4 185 58.9
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 7.9e-49 198.0 233 47.6
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 7.9e-49 198.0 217 50.2
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 1.0e-48 197.6 245 46.5
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 8.7e-48 194.5 233 46.8
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 1.5e-47 193.7 244 45.5
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 2.5e-47 193.0 201 50.2
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 7.4e-47 191.4 222 48.6
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 4.8e-46 188.7 156 55.1
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.4e-45 187.2 142 58.5
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 2.6e-44 183.0 225 48.9
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 3.4e-44 182.6 215 45.6
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 2.9e-43 179.5 221 46.2
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 3.8e-43 179.1 221 45.7
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 1.1e-42 177.6 134 56.7
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 1.4e-42 177.2 224 47.8
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 1.4e-42 177.2 218 45.0
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 4.2e-42 175.6 198 46.5
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 4.2e-42 175.6 158 53.8
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 7.1e-42 174.9 161 51.6
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.2e-41 174.1 221 45.2
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 2.1e-41 173.3 218 44.0
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 2.1e-41 173.3 203 46.8
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 2.1e-41 173.3 227 44.9
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 3.5e-41 172.6 227 44.9
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 7.9e-41 171.4 221 43.4
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 1.3e-40 170.6 224 46.4
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 1.3e-40 170.6 187 48.7
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 5.1e-40 168.7 129 56.6
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 3.7e-38 162.5 278 39.9
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 3.4e-36 156.0 160 53.8
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.3e-35 154.1 225 41.3
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 1.4e-34 150.6 211 42.7
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 1.9e-34 150.2 123 57.7
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 3.2e-34 149.4 231 42.0
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 9.3e-34 147.9 132 53.8
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 1.8e-32 143.7 142 50.7
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 3.0e-32 142.9 227 40.1
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 3.0e-32 142.9 227 40.1
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 3.9e-32 142.5 216 38.9
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 6.7e-32 141.7 228 37.7
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 1.8e-29 133.7 222 38.7
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 6.9e-29 131.7 130 46.2
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 2.0e-28 130.2 106 55.7
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 5.9e-28 128.6 82 74.4
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 6.3e-22 108.6 88 60.2
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 5.0e-19 99.0 63 71.4
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 1.9e-18 97.1 114 51.8
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 3.3e-15 86.3 54 70.4
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 2.8e-14 83.2 54 70.4
SGA_v2.0_scaffold1G00707 Striga asiatica HOM05D003890 ORTHO05D004514 5.7e-07 58.9 136 36.0


User provided reference genes

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