Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002741g0110 Nicotiana tabacum HOM05D004268 ORTHO05D004958 2.1e-20 102.4 106 100.0
Peaxi162Scf00004g00263 Petunia axillaris HOM05D004268 ORTHO05D004958 2.3e-14 82.4 108 50.9
CARHR096900 Cardamine hirsuta HOM05D004268 ORTHO05D004958 6.2e-12 74.3 41 85.4
Psat5g208760 Pisum sativum HOM05D004268 ORTHO05D004958 1.8e-11 72.8 39 87.2
BraA03t13354Z Brassica rapa HOM05D004268 ORTHO05D004958 2.3e-11 72.4 41 82.9
Thhalv10021813m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 2.3e-11 72.4 41 82.9
BcaC05g28213 Brassica carinata HOM05D004268 ORTHO05D004958 3.1e-11 72.0 41 82.9
C05p43040 Brassica napus HOM05D004268 ORTHO05D004958 3.1e-11 72.0 41 82.9
BolC5t33035H Brassica oleracea HOM05D004268 ORTHO05D004958 3.1e-11 72.0 41 82.9
BraA05t21659Z Brassica rapa HOM05D004268 ORTHO05D004958 3.1e-11 72.0 41 82.9
Aa31LG8G7770 Aethionema arabicum HOM05D004268 ORTHO05D004958 5.2e-11 71.2 41 80.5
Migut.D00609 Erythranthe guttata HOM05D004268 ORTHO05D004958 5.2e-11 71.2 41 82.9
AL3G35000 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 6.8e-11 70.9 41 80.5
AT3G21055 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 6.8e-11 70.9 41 80.5
BcaB06g26173 Brassica carinata HOM05D004268 ORTHO05D004958 6.8e-11 70.9 41 80.5
BcaC01g03530 Brassica carinata HOM05D004268 ORTHO05D004958 6.8e-11 70.9 41 80.5
C01p43220 Brassica napus HOM05D004268 ORTHO05D004958 6.8e-11 70.9 41 80.5
C03p51410 Brassica napus HOM05D004268 ORTHO05D004958 6.8e-11 70.9 41 80.5
BolC3t17427H Brassica oleracea HOM05D004268 ORTHO05D004958 6.8e-11 70.9 41 80.5
Carub.0003s2095 Capsella rubella HOM05D004268 ORTHO05D004958 1.5e-10 69.7 41 78.0
Ciclev10017247m.g Citrus clementina HOM05D004268 ORTHO05D004958 3.4e-10 68.6 39 79.5
Ca_14452_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 4.4e-10 68.2 41 82.9
Ca_14453_v3 Cicer arietinum L. HOM05D003957 ORTHO05D004833 4.4e-10 68.2 41 82.9
Medtr3g030860 Medicago truncatula HOM05D004268 ORTHO05D004958 4.4e-10 68.2 41 82.9
BcaC09g49044 Brassica carinata HOM05D004268 ORTHO05D004958 5.8e-10 67.8 39 79.5
BcaC08g43309 Brassica carinata HOM05D004268 ORTHO05D004958 7.6e-10 67.4 39 79.5
A05p27660 Brassica napus HOM05D004268 ORTHO05D004958 7.6e-10 67.4 40 80.0
A06p02510 Brassica napus HOM05D004268 ORTHO05D004958 7.6e-10 67.4 39 79.5
C06p06560 Brassica napus HOM05D004268 ORTHO05D004958 7.6e-10 67.4 39 79.5
BolC6t35768H Brassica oleracea HOM05D004268 ORTHO05D004958 7.6e-10 67.4 39 79.5
Lsat_1_v5_gn_6_25460 Lactuca sativa HOM05D004268 ORTHO05D004958 1.3e-09 66.6 38 81.6
TPR.G35305 Trifolium pratense HOM05D004268 ORTHO05D004958 1.3e-09 66.6 41 80.5
Peaxi162Scf00032g00063 Petunia axillaris HOM05D004268 ORTHO05D004958 2.2e-09 65.9 107 43.0
A01p33800 Brassica napus HOM05D004268 ORTHO05D004958 2.9e-09 65.5 38 81.6
BolC1t04268H Brassica oleracea HOM05D004268 ORTHO05D004958 2.9e-09 65.5 38 81.6
BraA01t03491Z Brassica rapa HOM05D004268 ORTHO05D004958 2.9e-09 65.5 38 81.6
DCAR_029953 Daucus carota HOM05D004268 ORTHO05D004958 2.9e-09 65.5 106 42.5
Gohir.A09G113900 Gossypium hirsutum HOM05D004268 ORTHO05D004958 3.8e-09 65.1 39 84.6
Gohir.D09G110500 Gossypium hirsutum HOM05D004268 ORTHO05D004958 3.8e-09 65.1 39 84.6
HanXRQChr02g0052031 Helianthus annuus HOM05D004268 ORTHO05D004958 3.8e-09 65.1 38 78.9
Oeu063326.1 Olea europaea HOM05D004268 ORTHO05D004958 3.8e-09 65.1 39 79.5
BraA06t23458Z Brassica rapa HOM05D004268 ORTHO05D004958 8.4e-09 63.9 38 78.9
Aa31LG10G3570 Aethionema arabicum HOM05D004268 ORTHO05D004958 1.1e-08 63.5 39 79.5
AL1G59250 Arabidopsis lyrata HOM05D004268 ORTHO05D004958 1.1e-08 63.5 39 82.1
DCAR_002077 Daucus carota HOM05D004268 ORTHO05D004958 1.1e-08 63.5 39 76.9
DCAR_031628 Daucus carota HOM05D004268 ORTHO05D004958 1.1e-08 63.5 39 76.9
AUR62000132 Chenopodium quinoa HOM05D004268 ORTHO05D004958 1.4e-08 63.2 103 41.7
Cc06_g23280 Coffea canephora HOM05D004268 ORTHO05D004958 1.4e-08 63.2 106 37.7
TPR.G35302 Trifolium pratense HOM05D004268 ORTHO05D004958 1.4e-08 63.2 39 82.1
CANSAT54G2544 Cannabis sativa HOM05D004268 ORTHO05D004958 1.9e-08 62.8 39 82.1
Hma1.2p1_0368F.1_g137310 Hydrangea macrophylla HOM05D004268 ORTHO05D004958 1.9e-08 62.8 39 79.5
CARHR041550 Cardamine hirsuta HOM05D004268 ORTHO05D004958 2.4e-08 62.4 39 79.5
AUR62019312 Chenopodium quinoa HOM05D004268 ORTHO05D004958 2.4e-08 62.4 38 76.3
ECA233G4176 Erigeron canadensis HOM05D004268 ORTHO05D004958 2.4e-08 62.4 37 78.4
PGSC0003DMG400004639 Solanum tuberosum HOM05D004268 ORTHO05D004958 2.4e-08 62.4 39 79.5
TWI32G0064 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 3.2e-08 62.0 41 73.2
Sed0017781 Sechium edule HOM05D004268 ORTHO05D004958 4.1e-08 61.6 38 81.6
AT1G51400 Arabidopsis thaliana HOM05D004268 ORTHO05D004958 5.4e-08 61.2 39 76.9
Cpa.g.sc84.45 Carica papaya HOM05D004268 ORTHO05D004958 5.4e-08 61.2 38 76.3
Migut.N02326 Erythranthe guttata HOM05D004268 ORTHO05D004958 5.4e-08 61.2 38 78.9
TWI34G1192 Tripterygium wilfordii HOM05D004268 ORTHO05D004958 5.4e-08 61.2 41 70.7
Thhalv10011883m.g Eutrema salsugineum HOM05D004268 ORTHO05D004958 7.1e-08 60.8 39 76.9
FvH4_3g28710 Fragaria vesca HOM05D004268 ORTHO05D004958 7.1e-08 60.8 39 76.9
FAN11G3362 Fragaria x ananassa HOM05D004268 ORTHO05D004958 7.1e-08 60.8 39 76.9
FAN16G2720 Fragaria x ananassa HOM05D004268 ORTHO05D004958 7.1e-08 60.8 39 76.9
FAN21G1561 Fragaria x ananassa HOM05D004268 ORTHO05D004958 7.1e-08 60.8 39 76.9
FAN25G2913 Fragaria x ananassa HOM05D004268 ORTHO05D004958 7.1e-08 60.8 39 76.9
RcHm_v2.0_Chr5g0052351 Rosa chinensis HOM05D004268 ORTHO05D004958 7.1e-08 60.8 39 76.9
Sp3g19010 Schrenkiella parvula HOM05D004268 ORTHO05D004958 7.1e-08 60.8 34 82.4
Manes.06G163500 Manihot esculenta HOM05D004268 ORTHO05D004958 1.2e-07 60.1 38 76.3
Prupe.4G250700 Prunus persica HOM05D004268 ORTHO05D004958 1.2e-07 60.1 39 74.4
Haze_23147 Corylus avellana HOM05D004268 ORTHO05D004958 1.6e-07 59.7 104 40.4
Manes.14G003500 Manihot esculenta HOM05D004268 ORTHO05D004958 2.1e-07 59.3 38 78.9
Sp1g38070 Schrenkiella parvula HOM05D004268 ORTHO05D004958 2.1e-07 59.3 38 76.3
Ah.06g194080 Amaranthus hybridus HOM05D004268 ORTHO05D004958 2.7e-07 58.9 38 73.7
CiPaw.13G159300 Carya illinoinensis HOM05D004268 ORTHO05D004958 2.7e-07 58.9 38 78.9
Lj3g0019333 Lotus japonicus HOM05D004268 ORTHO05D004958 2.7e-07 58.9 39 74.4
Potri.001G256900 Populus trichocarpa HOM05D004268 ORTHO05D004958 2.7e-07 58.9 38 73.7
THA.LOC104817911 Tarenaya hassleriana HOM05D004268 ORTHO05D004958 2.7e-07 58.9 37 73.0
EL10Ac4g10238 Beta vulgaris HOM05D004268 ORTHO05D004958 3.5e-07 58.5 38 73.7
CiPaw.14G118100 Carya illinoinensis HOM05D004268 ORTHO05D004958 3.5e-07 58.5 38 78.9
HanXRQChr13g0401101 Helianthus annuus HOM05D004268 ORTHO05D004958 3.5e-07 58.5 38 71.1
TPR.G3668 Trifolium pratense HOM05D004268 ORTHO05D004958 3.5e-07 58.5 41 70.7
Actinidia23976 Actinidia chinensis HOM05D004268 ORTHO05D004958 4.6e-07 58.2 38 76.3
MD11G1191900 Malus domestica HOM05D004268 ORTHO05D004958 4.6e-07 58.2 39 71.8
Potri.009G052500 Populus trichocarpa HOM05D004268 ORTHO05D004958 4.6e-07 58.2 105 52.4
Cfa009783 Carpinus fangiana HOM05D004268 ORTHO05D004958 6.0e-07 57.8 103 38.8
Medtr3g030850 Medicago truncatula HOM05D004268 ORTHO05D004958 6.0e-07 57.8 36 83.3
Atru.chr3.2699 Acer truncatum HOM05D004268 ORTHO05D004958 7.8e-07 57.4 38 71.1
Nitab4.5_0004741g0020 Nicotiana tabacum HOM05D004268 ORTHO05D004958 7.8e-07 57.4 37 75.7
VMungo1127G0621 Vigna mungo HOM05D004268 ORTHO05D004958 7.8e-07 57.4 38 78.9
CSS0050517 Camellia sinensis var. sinensis HOM05D004268 ORTHO05D004958 1.0e-06 57.0 38 76.3
Lj3g0003624 Lotus japonicus HOM05D004268 ORTHO05D004958 1.0e-06 57.0 39 69.2
Sed0025860 Sechium edule HOM05D004268 ORTHO05D004958 1.0e-06 57.0 38 73.7
Cpa.g.sc125.13 Carica papaya HOM05D004268 ORTHO05D004958 1.3e-06 56.6 39 74.4
Glyma.15G275600 Glycine max HOM05D004268 ORTHO05D004958 1.3e-06 56.6 39 71.8
Medtr4g037505 Medicago truncatula HOM05D004268 ORTHO05D004958 1.3e-06 56.6 110 36.4
Duzib150G0004 Durio zibethinus HOM05D004268 ORTHO05D004958 1.7e-06 56.2 39 69.2
MD03G1173700 Malus domestica HOM05D004268 ORTHO05D004958 1.7e-06 56.2 38 73.7
Oeu033136.1 Olea europaea HOM05D004268 ORTHO05D004958 1.7e-06 56.2 38 76.3
Psat7g196400 Pisum sativum HOM05D004268 ORTHO05D004958 1.7e-06 56.2 39 71.8
unitig_8.g2993 Utricularia gibba HOM05D004268 ORTHO05D004958 1.7e-06 56.2 40 72.5
Glyma.10G089300 Glycine max HOM05D004268 ORTHO05D004958 2.3e-06 55.8 39 71.8
Rhsim01G0192200 Rhododendron simsii HOM05D004268 ORTHO05D004958 3.0e-06 55.5 38 73.7
Glyma.10G089500 Glycine max HOM05D004268 ORTHO05D004958 3.9e-06 55.1 38 73.7
Gohir.A08G143800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 3.9e-06 55.1 39 74.4
Gohir.D08G164800 Gossypium hirsutum HOM05D004268 ORTHO05D004958 3.9e-06 55.1 39 74.4
Gorai.004G171800 Gossypium raimondii HOM05D004268 ORTHO05D004958 3.9e-06 55.1 39 74.4
PGR102G2953 Punica granatum HOM05D004268 ORTHO05D004958 3.9e-06 55.1 38 65.8
SGA_v2.0_scaffold3G01494 Striga asiatica HOM05D004268 ORTHO05D004958 3.9e-06 55.1 39 69.2
COL.COLO4_06120 Corchorus olitorius HOM05D004268 ORTHO05D004958 5.1e-06 54.7 38 68.4
PSO541G0301 Papaver somniferum HOM05D004268 ORTHO05D004958 5.1e-06 54.7 39 66.7
EL10Ac2g04340 Beta vulgaris HOM05D004268 ORTHO05D004958 6.6e-06 54.3 103 35.9
CDE05G0821 Ceratophyllum demersum HOM05D004268 ORTHO05D004958 6.6e-06 54.3 38 71.1
Glyma.15G275700 Glycine max HOM05D004268 ORTHO05D004958 6.6e-06 54.3 39 69.2
Nitab4.5_0004438g0050 Nicotiana tabacum HOM05D004268 ORTHO05D004958 6.6e-06 54.3 29 82.8
Sc09g0000770 Simmondsia chinensis HOM05D004268 ORTHO05D004958 6.6e-06 54.3 38 71.1
Thecc.09G235200 Theobroma cacao HOM05D004268 ORTHO05D004958 6.6e-06 54.3 38 65.8
Nitab4.5_0002741g0120 Nicotiana tabacum HOM05D004268 ORTHO05D004958 8.6e-06 53.9 38 73.7
QL04p008292 Quercus lobata HOM05D004268 ORTHO05D004958 8.6e-06 53.9 109 37.6


User provided reference genes

Program Settings