Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002741g0090 Nicotiana tabacum HOM05D007890 ORTHO05D009945 2.1e-89 332.4 177 100.0
Peaxi162Scf00004g02526 Petunia axillaris HOM05D007890 ORTHO05D009945 4.6e-52 208.4 178 66.9
PGSC0003DMG400033336 Solanum tuberosum HOM05D007890 ORTHO05D009945 5.6e-50 201.4 156 70.5
Solyc11g065680.1 Solanum lycopersicum HOM05D007890 ORTHO05D009945 1.4e-48 196.8 156 69.2
Sopen11g025420 Solanum pennellii HOM05D007890 ORTHO05D009945 3.1e-48 195.7 156 69.2
Nitab4.5_0001587g0050 Nicotiana tabacum HOM05D007890 ORTHO05D009945 3.3e-42 175.6 177 59.9
Dinv36254 Davidia involucrata HOM05D007890 ORTHO05D009945 1.7e-35 153.3 175 53.7
Oeu025872.1 Olea europaea HOM05D007890 ORTHO05D009945 1.1e-32 144.1 159 56.0
MSTRG.17595 Avicennia marina HOM05D007890 ORTHO05D009945 1.4e-29 133.7 170 49.4
Actinidia06910 Actinidia chinensis HOM05D007890 ORTHO05D009945 2.7e-28 129.4 175 47.4
Hma1.2p1_0606F.1_g188050 Hydrangea macrophylla HOM05D007890 ORTHO05D009945 1.5e-26 123.6 186 46.8
QL01p004625 Quercus lobata HOM05D007890 ORTHO05D009945 1.3e-25 120.6 149 52.3
Rhsim13G0220700 Rhododendron simsii HOM05D007890 ORTHO05D009945 2.8e-25 119.4 141 55.3
SalBow5G2971 Salvia bowleyana HOM05D007890 ORTHO05D009945 6.2e-25 118.2 116 56.9
vmacro04152 Vaccinium macrocarpon HOM05D007890 ORTHO05D009945 1.1e-24 117.5 99 64.6
Duzib170G0138 Durio zibethinus HOM05D007890 ORTHO05D009945 5.8e-23 111.7 115 54.8
Gohir.D05G072500 Gossypium hirsutum HOM05D007890 ORTHO05D009945 7.6e-23 111.3 152 44.1
Migut.N02322 Erythranthe guttata HOM05D007890 ORTHO05D009945 1.0e-22 110.9 175 44.6
Eucgr.B03690 Eucalyptus grandis HOM05D007890 ORTHO05D009945 1.0e-22 110.9 119 53.8
Gohir.A05G069600 Gossypium hirsutum HOM05D007890 ORTHO05D009945 1.3e-22 110.5 152 45.4
Potri.001G257400 Populus trichocarpa HOM05D007890 ORTHO05D009945 2.2e-22 109.8 116 53.4
Gorai.009G073500 Gossypium raimondii HOM05D007890 ORTHO05D009945 3.8e-22 109.0 152 44.7
Atru.chr3.2706 Acer truncatum HOM05D007890 ORTHO05D009945 1.6e-20 103.6 164 41.5
Lj1P329T66 Lonicera japonica HOM05D007890 ORTHO05D009945 1.6e-20 103.6 127 49.6
EL10Ac4g10243 Beta vulgaris HOM05D007890 ORTHO05D009945 2.1e-20 103.2 153 43.1
TAR633G1231 Trochodendron aralioides HOM05D007890 ORTHO05D009945 2.1e-20 103.2 109 54.1
Ah.06g194130 Amaranthus hybridus HOM05D007890 ORTHO05D009945 6.0e-20 101.7 117 53.0
Manes.13G093240 Manihot esculenta HOM05D007890 ORTHO05D009945 6.0e-20 101.7 105 55.2
GSVIVG01025250001 Vitis vinifera HOM05D007890 ORTHO05D009945 7.9e-20 101.3 107 57.0
Thecc.09G234600 Theobroma cacao HOM05D007890 ORTHO05D009945 1.0e-19 100.9 151 41.1
AT2G01870 Arabidopsis thaliana HOM05D007890 ORTHO05D009945 6.7e-19 98.2 116 47.4
Cfa009778 Carpinus fangiana HOM05D007890 ORTHO05D009945 8.7e-19 97.8 124 52.4
Lsat_1_v5_gn_2_29200 Lactuca sativa HOM05D007890 ORTHO05D009945 1.1e-18 97.4 96 64.6
Ciclev10016956m.g Citrus clementina HOM05D007890 ORTHO05D009945 4.3e-18 95.5 120 47.5
Glyma.08G336100 Glycine max HOM05D007890 ORTHO05D009945 5.7e-18 95.1 100 54.0
AL5G10980 Arabidopsis lyrata HOM05D007890 ORTHO05D009945 9.6e-18 94.4 124 47.6
TPR.G14719 Trifolium pratense HOM05D005961 ORTHO05D007391 1.3e-17 94.0 107 49.5
TWI32G0791 Tripterygium wilfordii HOM05D007890 ORTHO05D009945 1.3e-17 94.0 176 42.0
CiPaw.13G159700 Carya illinoinensis HOM05D007890 ORTHO05D009945 2.1e-17 93.2 148 48.6
Sabra16G0157400 Salix brachista HOM05D007890 ORTHO05D009945 3.7e-17 92.4 175 41.1
CARHR144430 Cardamine hirsuta HOM05D007890 ORTHO05D009945 8.2e-17 91.3 116 46.6
arahy.Tifrunner.gnm1.ann1.I2HDTW Arachis hypogaea HOM05D007890 ORTHO05D009945 1.1e-16 90.9 97 51.5
Lalb_Chr15g0082521 Lupinus albus HOM05D007890 ORTHO05D009945 1.1e-16 90.9 98 53.1
arahy.Tifrunner.gnm1.ann1.SWS7SX Arachis hypogaea HOM05D007890 ORTHO05D009945 1.4e-16 90.5 97 51.5
HanXRQChr08g0209341 Helianthus annuus HOM05D007890 ORTHO05D009945 1.8e-16 90.1 108 50.0
Medtr3g061480 Medicago truncatula HOM05D007890 ORTHO05D009945 1.8e-16 90.1 99 47.5
ClCG02G023170 Citrullus lanatus HOM05D007890 ORTHO05D009945 3.1e-16 89.4 118 46.6
Sp2g13290 Schrenkiella parvula HOM05D007890 ORTHO05D009945 4.1e-16 89.0 123 43.9
Carub.0005s0083 Capsella rubella HOM05D007890 ORTHO05D009945 5.3e-16 88.6 118 44.9
THA.LOC104801952 Tarenaya hassleriana HOM05D007890 ORTHO05D009945 6.9e-16 88.2 111 47.7
Lj6g0024098 Lotus japonicus HOM05D007890 ORTHO05D009945 9.0e-16 87.8 105 48.6
MD03G1174000 Malus domestica HOM05D007890 ORTHO05D009945 9.0e-16 87.8 112 49.1
BcaC06g31267 Brassica carinata HOM05D007890 ORTHO05D009945 1.2e-15 87.4 121 47.1
MD11G1192200 Malus domestica HOM05D007890 ORTHO05D009945 1.5e-15 87.0 112 49.1
MELO3C014589.2 Cucumis melo HOM05D007890 ORTHO05D009945 2.6e-15 86.3 121 45.5
BcaC06g34102 Brassica carinata HOM05D007890 ORTHO05D009945 7.6e-15 84.7 123 43.1
C07p32670 Brassica napus HOM05D001297 ORTHO05D001135 7.6e-15 84.7 123 43.1
Psat5g163960 Pisum sativum HOM05D007890 ORTHO05D009945 7.6e-15 84.7 98 50.0
BolC7t43788H Brassica oleracea HOM05D001297 ORTHO05D001135 1.0e-14 84.3 124 42.7
Thhalv10005015m.g Eutrema salsugineum HOM05D007890 ORTHO05D009945 1.0e-14 84.3 98 49.0
Aqoxy2G00189 Aquilegia oxysepala HOM05D007890 ORTHO05D009945 1.3e-14 84.0 112 44.6
CsaV3_6G039340 Cucumis sativus L. HOM05D007890 ORTHO05D009945 2.2e-14 83.2 121 45.5
unitig_22.g5692 Utricularia gibba HOM05D007890 ORTHO05D009945 5.0e-14 82.0 97 50.5
A06p43960 Brassica napus HOM05D001297 ORTHO05D001135 6.5e-14 81.6 146 38.4
BraA06t27271Z Brassica rapa HOM05D001297 ORTHO05D001135 6.5e-14 81.6 146 38.4
Aa31LG2G8040 Aethionema arabicum HOM05D007890 ORTHO05D009945 1.4e-13 80.5 148 38.5
ECA233G3563 Erigeron canadensis HOM05D000013 ORTHO05D004590 1.9e-13 80.1 107 49.5
CDE05G2272 Ceratophyllum demersum HOM05D007890 ORTHO05D009945 4.2e-13 79.0 104 47.1
RcHm_v2.0_Chr5g0052301 Rosa chinensis HOM05D007890 ORTHO05D009945 7.2e-13 78.2 127 42.5
FAN21G3432 Fragaria x ananassa HOM05D007890 ORTHO05D009945 1.6e-12 77.0 108 44.4
FAN16G0819 Fragaria x ananassa HOM05D007890 ORTHO05D009945 2.1e-12 76.6 108 44.4
Sed0013757 Sechium edule HOM05D007890 ORTHO05D009945 2.1e-12 76.6 96 43.8
VMungo0540G1907 Vigna mungo HOM05D007890 ORTHO05D009945 2.7e-12 76.3 136 39.0
PSO423G0105 Papaver somniferum HOM05D007890 ORTHO05D009945 3.5e-12 75.9 118 44.9
FvH4_3g28750 Fragaria vesca HOM05D007890 ORTHO05D009945 4.6e-12 75.5 108 44.4
FAN11G2622 Fragaria x ananassa HOM05D007890 ORTHO05D009945 4.6e-12 75.5 108 44.4
Phvul.006G062000 Phaseolus vulgaris HOM05D007890 ORTHO05D009945 1.0e-11 74.3 138 39.9
Nn2g15343 Nelumbo nucifera HOM05D007890 ORTHO05D009945 3.0e-11 72.8 163 36.8
Prupe.4G250100 Prunus persica HOM05D007890 ORTHO05D009945 5.1e-11 72.0 101 46.5
PSO724G0038 Papaver somniferum HOM05D007890 ORTHO05D009945 8.7e-11 71.2 104 46.2
Cpa.g.sc84.47 Carica papaya HOM05D007890 ORTHO05D009945 5.7e-10 68.6 193 33.2
MBI02_g09445_MAGBIO Magnolia biondii HOM05D007890 ORTHO05D009945 1.6e-09 67.0 128 39.1
CSS0004739 Camellia sinensis var. sinensis HOM05D007890 ORTHO05D009945 1.1e-08 64.3 57 61.4
PGR102G2636 Punica granatum HOM05D007890 ORTHO05D009945 1.2e-07 60.8 100 41.0
TAR633G1577 Trochodendron aralioides HOM05D007890 ORTHO05D009945 3.8e-06 55.8 66 43.9
Duzib170G0703 Durio zibethinus HOM05D007890 ORTHO05D009945 8.5e-06 54.7 46 63.0


User provided reference genes

Program Settings