Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002739g0140 Nicotiana tabacum HOM05D003783 ORTHO05D015637 1.0e-90 336.7 161 100.0
Peaxi162Scf01528g00012 Petunia axillaris HOM05D009456 ORTHO05D015637 2.5e-25 119.4 61 91.8
Lsat_1_v5_gn_0_35241 Lactuca sativa HOM05D009456 ORTHO05D015637 4.5e-22 108.6 74 77.0
Nitab4.5_0000172g1220 Nicotiana tabacum HOM05D009456 ORTHO05D015637 5.9e-22 108.2 61 80.3
Nitab4.5_0000933g0040 Nicotiana tabacum HOM05D009456 ORTHO05D017910 1.0e-21 107.5 59 84.7
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 1.4e-20 103.6 51 94.1
Nitab4.5_0001023g0100 Nicotiana tabacum HOM05D009456 ORTHO05D011674 3.2e-20 102.4 78 64.1
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 9.4e-20 100.9 49 95.9
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 9.4e-20 100.9 49 95.9
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 9.4e-20 100.9 49 95.9
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 2.1e-19 99.8 49 93.9
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.1e-19 99.8 49 93.9
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.1e-19 99.8 49 93.9
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.1e-19 99.8 49 93.9
Nitab4.5_0000172g1210 Nicotiana tabacum HOM05D009456 ORTHO05D011674 2.7e-19 99.4 54 83.3
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 4.7e-19 98.6 49 93.9
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 4.7e-19 98.6 49 93.9
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.7e-19 98.6 49 93.9
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.7e-19 98.6 49 93.9
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.7e-19 98.6 49 93.9
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 4.7e-19 98.6 49 93.9
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 6.1e-19 98.2 51 90.2
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 6.1e-19 98.2 49 93.9
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 1.8e-18 96.7 49 91.8
Nitab4.5_0000128g0160 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.3e-18 96.3 49 89.8
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 5.1e-18 95.1 49 89.8
Nitab4.5_0000172g1970 Nicotiana tabacum HOM05D009456 ORTHO05D015637 5.1e-18 95.1 75 69.3
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 5.1e-18 95.1 50 92.0
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 5.1e-18 95.1 50 92.0
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 5.1e-18 95.1 50 92.0
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 5.1e-18 95.1 50 92.0
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 5.1e-18 95.1 50 92.0
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 5.1e-18 95.1 50 92.0
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 6.7e-18 94.7 49 87.8
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 6.7e-18 94.7 49 87.8
CAN.G134.19 Capsicum annuum HOM05D003783 ORTHO05D004568 8.8e-18 94.4 49 89.8
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 8.8e-18 94.4 49 87.8
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 1.1e-17 94.0 49 89.8
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 1.5e-17 93.6 51 86.3
MSTRG.27795 Avicennia marina HOM05D003783 ORTHO05D004568 2.0e-17 93.2 49 87.8
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 2.6e-17 92.8 72 69.4
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 5.7e-17 91.7 81 61.7
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 7.4e-17 91.3 72 68.1
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 7.4e-17 91.3 72 68.1
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 9.7e-17 90.9 83 59.0
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 9.7e-17 90.9 50 90.0
Nitab4.5_0003135g0040 Nicotiana tabacum HOM05D009456 ORTHO05D030234 9.7e-17 90.9 54 81.5
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 9.7e-17 90.9 46 91.3
TPR.G22134 Trifolium pratense HOM05D003783 ORTHO05D004568 9.7e-17 90.9 82 61.0
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 4.8e-16 88.6 47 89.4
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 4.8e-16 88.6 49 85.7
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 6.3e-16 88.2 49 85.7
Lsat_1_v5_gn_7_67781 Lactuca sativa HOM05D003783 ORTHO05D004568 6.3e-16 88.2 72 68.1
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 8.2e-16 87.8 47 91.5
Nitab4.5_0002589g0080 Nicotiana tabacum HOM05D003783 ORTHO05D004568 8.2e-16 87.8 71 66.2
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 1.4e-15 87.0 47 87.2
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 1.4e-15 87.0 47 87.2
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 1.4e-15 87.0 47 87.2
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 1.4e-15 87.0 47 87.2
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 1.4e-15 87.0 47 87.2
Lsat_1_v5_gn_8_111800 Lactuca sativa HOM05D003783 ORTHO05D004568 1.4e-15 87.0 47 87.2
HanXRQChr01g0029691 Helianthus annuus HOM05D003783 ORTHO05D004568 2.4e-15 86.3 72 63.9
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 2.4e-15 86.3 47 85.1
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 3.1e-15 85.9 43 90.7
Lsat_1_v5_gn_4_139080 Lactuca sativa HOM05D003783 ORTHO05D004568 4.1e-15 85.5 45 86.7
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 4.1e-15 85.5 51 80.4
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 5.3e-15 85.1 49 81.6
Solyc11g063630.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.9e-15 84.7 44 88.6
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 1.2e-14 84.0 47 83.0
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 2.0e-14 83.2 46 82.6
Peaxi162Scf00259g00083 Petunia axillaris HOM05D009456 ORTHO05D015637 2.0e-14 83.2 46 89.1
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 2.6e-14 82.8 47 83.0
Lsat_1_v5_gn_5_16140 Lactuca sativa HOM05D003783 ORTHO05D004568 2.6e-14 82.8 47 83.0
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 3.4e-14 82.4 49 79.6
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 3.4e-14 82.4 49 79.6
AUR62033936 Chenopodium quinoa HOM05D003783 ORTHO05D004568 3.4e-14 82.4 49 79.6
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 1.0e-13 80.9 49 81.6
HanXRQChr11g0334181 Helianthus annuus HOM05D003783 ORTHO05D004568 2.9e-13 79.3 47 80.9
HanXRQChr17g0544011 Helianthus annuus HOM05D003783 ORTHO05D004568 2.9e-13 79.3 47 80.9
ATR1173G003 Amborella trichopoda HOM05D003783 ORTHO05D004568 8.5e-13 77.8 75 56.0
BcaC09g49589 Brassica carinata HOM05D003783 ORTHO05D004568 1.1e-12 77.4 38 92.1
BolSC28t60306H Brassica oleracea HOM05D003783 ORTHO05D004568 1.1e-12 77.4 38 92.1
BolSC28t60363H Brassica oleracea HOM05D003783 ORTHO05D004568 1.1e-12 77.4 38 92.1
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 1.1e-12 77.4 49 77.6
Sp3g25860 Schrenkiella parvula HOM05D003783 ORTHO05D004568 1.1e-12 77.4 38 92.1
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 1.4e-12 77.0 37 94.6
C01p34860 Brassica napus HOM05D003783 ORTHO05D004568 3.2e-12 75.9 38 89.5
C01p34760 Brassica napus HOM05D003783 ORTHO05D004568 2.1e-11 73.2 38 86.8
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 3.6e-11 72.4 37 86.5
BraSC177t45761Z Brassica rapa HOM05D003783 ORTHO05D004568 8.0e-11 71.2 34 94.1
BraSC48t46228Z Brassica rapa HOM05D003783 ORTHO05D004568 8.0e-11 71.2 34 94.1
BraSC48t46298Z Brassica rapa HOM05D003783 ORTHO05D004568 8.0e-11 71.2 34 94.1
BraSC48t46316Z Brassica rapa HOM05D003783 ORTHO05D004568 8.0e-11 71.2 34 94.1
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 5.2e-10 68.6 36 86.1
Nitab4.5_0011099g0020 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.5e-09 67.0 34 85.3
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 3.3e-09 65.9 37 78.4
Peaxi162Scf00720g00065 Petunia axillaris HOM05D003783 ORTHO05D004568 5.7e-09 65.1 34 82.4
CAN.G1439.6 Capsicum annuum HOM05D003783 ORTHO05D004568 4.8e-08 62.0 37 73.0
Solyc06g065880.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.3e-08 61.6 36 80.6
SHI26672 Sapria himalayana HOM05D003783 ORTHO05D004568 3.1e-07 59.3 44 65.9
Nitab4.5_0001788g0080 Nicotiana tabacum HOM05D009456 ORTHO05D015637 1.2e-06 57.4 31 90.3
AL3G44470 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 1.6e-06 57.0 27 92.6
CARHR283230 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.6e-06 57.0 27 92.6


User provided reference genes

Program Settings