Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002739g0040 Nicotiana tabacum HOM05D003958 ORTHO05D004864 4.6e-194 681.0 335 100.0
Nitab4.5_0008215g0010 Nicotiana tabacum HOM05D003958 ORTHO05D004864 1.9e-187 659.1 333 97.0
Peaxi162Scf00129g01325 Petunia axillaris HOM05D003958 ORTHO05D004864 4.9e-172 607.8 313 94.2
PGSC0003DMG400000483 Solanum tuberosum HOM05D003958 ORTHO05D004864 7.8e-170 600.5 313 93.9
CAN.G206.10 Capsicum annuum HOM05D003958 ORTHO05D004864 2.3e-169 599.0 313 93.3
Sopen02g031390 Solanum pennellii HOM05D003958 ORTHO05D004864 3.0e-169 598.6 313 93.0
CSS0020788 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.9e-144 516.2 310 81.3
CSS0020854 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 1.9e-144 516.2 310 81.3
Cc02_g12190 Coffea canephora HOM05D003958 ORTHO05D004864 3.1e-142 508.8 312 79.2
Duzib147G0566 Durio zibethinus HOM05D003958 ORTHO05D004864 4.1e-142 508.4 312 79.8
Duzib147G0735 Durio zibethinus HOM05D003958 ORTHO05D004864 4.1e-142 508.4 312 79.8
vmacro18265 Vaccinium macrocarpon HOM05D003958 ORTHO05D004864 2.0e-141 506.1 328 76.8
DCAR_009028 Daucus carota HOM05D003958 ORTHO05D004864 2.2e-140 502.7 315 76.8
TAR622G1043 Trochodendron aralioides HOM05D003958 ORTHO05D004864 2.9e-140 502.3 309 80.6
FvH4_6g51011 Fragaria vesca HOM05D003958 ORTHO05D004864 1.1e-139 500.4 309 79.3
Thecc.04G013700 Theobroma cacao HOM05D003958 ORTHO05D004864 1.1e-139 500.4 312 79.2
Duzib147G0897 Durio zibethinus HOM05D003958 ORTHO05D004864 2.5e-139 499.2 310 79.7
Hund02774 Selenicereus undatus HOM05D003958 ORTHO05D004864 5.5e-139 498.0 326 75.5
CiPaw.04G026700 Carya illinoinensis HOM05D003958 ORTHO05D004864 3.6e-138 495.4 309 79.0
Oeu057051.1 Olea europaea HOM05D003958 ORTHO05D004864 3.6e-138 495.4 309 79.6
COL.COLO4_29053 Corchorus olitorius HOM05D003958 ORTHO05D004864 7.9e-138 494.2 309 78.3
Manes.17G113700 Manihot esculenta HOM05D003958 ORTHO05D004864 7.9e-138 494.2 309 78.6
Atru.chr6.2341 Acer truncatum HOM05D003958 ORTHO05D004864 1.8e-137 493.0 310 78.4
PGR054G0003 Punica granatum HOM05D003958 ORTHO05D004864 5.1e-137 491.5 309 77.7
Sed0009763 Sechium edule HOM05D003958 ORTHO05D004864 5.1e-137 491.5 309 78.3
Ciclev10016011m.g Citrus clementina HOM05D003958 ORTHO05D004864 1.1e-136 490.3 310 76.8
Gohir.D09G027100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.1e-136 490.3 309 78.3
Gorai.006G031600 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.1e-136 490.3 309 78.3
PGR119G1149 Punica granatum HOM05D003958 ORTHO05D004864 1.5e-136 490.0 309 77.7
TWI12G0059 Tripterygium wilfordii HOM05D003958 ORTHO05D004864 1.5e-136 490.0 309 78.3
Prupe.3G287900 Prunus persica HOM05D003958 ORTHO05D004864 3.3e-136 488.8 309 77.0
Haze_14701 Corylus avellana HOM05D003958 ORTHO05D004864 4.3e-136 488.4 309 78.0
Gohir.A09G027800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 7.4e-136 487.6 309 77.7
Phvul.011G172200 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 7.4e-136 487.6 312 78.8
CiPaw.03G040700 Carya illinoinensis HOM05D003958 ORTHO05D004864 9.7e-136 487.3 309 77.7
Gohir.D13G007800 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.7e-136 487.3 306 77.1
QL02p075632 Quercus lobata HOM05D003958 ORTHO05D004864 1.3e-135 486.9 309 77.3
Lj7A595G65 Lonicera japonica HOM05D003958 ORTHO05D004864 1.6e-135 486.5 314 77.1
TPR.G11724 Trifolium pratense HOM05D003958 ORTHO05D004864 3.7e-135 485.3 312 76.9
RcHm_v2.0_Chr2g0172551 Rosa chinensis HOM05D003958 ORTHO05D004864 1.4e-134 483.4 310 77.1
Eucgr.I01766 Eucalyptus grandis HOM05D003958 ORTHO05D004864 1.8e-134 483.0 309 77.7
Sabra18G0099100 Salix brachista HOM05D003958 ORTHO05D004864 5.3e-134 481.5 303 77.6
CsaV3_1G037790 Cucumis sativus L. HOM05D003958 ORTHO05D004864 1.2e-133 480.3 312 76.3
MELO3C021808.2 Cucumis melo HOM05D003958 ORTHO05D004864 1.5e-133 479.9 312 76.9
Lalb_Chr03g0031671 Lupinus albus HOM05D003958 ORTHO05D004864 1.5e-133 479.9 309 77.3
ClCG01G008920 Citrullus lanatus HOM05D003958 ORTHO05D004864 2.0e-133 479.6 309 76.4
EL10Ac9g21169 Beta vulgaris HOM05D003958 ORTHO05D004864 4.5e-133 478.4 309 74.4
Nn7g37719 Nelumbo nucifera HOM05D003958 ORTHO05D004864 7.7e-133 477.6 309 75.7
PSO832G3613 Papaver somniferum HOM05D003958 ORTHO05D004864 1.3e-132 476.9 311 75.9
Ca_00369_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 1.7e-132 476.5 310 77.1
Potri.018G120500 Populus trichocarpa HOM05D003958 ORTHO05D004864 1.7e-132 476.5 301 78.1
Sabra18G0100500 Salix brachista HOM05D003958 ORTHO05D004864 1.7e-132 476.5 301 77.1
Lju41A38T12 Lonicera japonica HOM05D003958 ORTHO05D004864 2.2e-132 476.1 309 76.7
Lsat_1_v5_gn_4_183181 Lactuca sativa HOM05D003958 ORTHO05D004864 3.8e-132 475.3 317 74.1
ECA232G3491 Erigeron canadensis HOM05D003958 ORTHO05D004864 6.5e-132 474.6 313 76.4
PSO063G1059 Papaver somniferum HOM05D003958 ORTHO05D004864 6.5e-132 474.6 311 75.6
Migut.H00096 Erythranthe guttata HOM05D003958 ORTHO05D004864 8.5e-132 474.2 309 76.1
MSTRG.3157 Avicennia marina HOM05D003958 ORTHO05D004864 1.1e-131 473.8 309 76.1
MBI05_g22036_MAGBIO Magnolia biondii HOM05D003958 ORTHO05D004864 1.9e-131 473.0 312 75.3
Sabra18G0098500 Salix brachista HOM05D003958 ORTHO05D004864 1.9e-131 473.0 301 77.1
Ca_00876_v3 Cicer arietinum L. HOM05D003958 ORTHO05D004864 3.2e-131 472.2 308 76.6
Lj2g0025561 Lotus japonicus HOM05D003958 ORTHO05D004864 3.2e-131 472.2 305 76.4
arahy.Tifrunner.gnm1.ann1.CB8F3G Arachis hypogaea HOM05D003958 ORTHO05D004864 4.2e-131 471.9 310 76.5
Aqoxy3G00906 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 7.2e-131 471.1 311 75.2
Psat1g092800 Pisum sativum HOM05D003958 ORTHO05D004864 7.2e-131 471.1 310 76.8
CDE06G0036 Ceratophyllum demersum HOM05D003958 ORTHO05D004864 1.2e-130 470.3 309 75.4
Lj3g0001252 Lotus japonicus HOM05D003958 ORTHO05D004864 1.2e-130 470.3 309 76.4
arahy.Tifrunner.gnm1.ann1.38SPRB Arachis hypogaea HOM05D003958 ORTHO05D004864 3.6e-130 468.8 310 75.8
CANSAT64G0951 Cannabis sativa HOM05D003958 ORTHO05D004864 3.6e-130 468.8 313 73.5
TPR.G33516 Trifolium pratense HOM05D003958 ORTHO05D004864 3.6e-130 468.8 306 77.5
Cpa.g.sc108.31 Carica papaya HOM05D003958 ORTHO05D004864 6.1e-130 468.0 310 74.8
HanXRQChr09g0255001 Helianthus annuus HOM05D003958 ORTHO05D004864 6.1e-130 468.0 310 74.5
Psat1g202680 Pisum sativum HOM05D003958 ORTHO05D004864 6.1e-130 468.0 312 75.3
Aqoxy2G00425 Aquilegia oxysepala HOM05D003958 ORTHO05D004864 7.9e-130 467.6 310 75.8
AUR62002487 Chenopodium quinoa HOM05D003958 ORTHO05D004864 5.7e-128 461.5 329 69.6
Hma1.2p1_0858F.1_g229230 Hydrangea macrophylla HOM05D003958 ORTHO05D004864 5.7e-128 461.5 335 71.9
VMungo0540G0822 Vigna mungo HOM05D003958 ORTHO05D004864 7.4e-128 461.1 313 73.2
Glyma.13G234900 Glycine max HOM05D003958 ORTHO05D004864 9.7e-128 460.7 311 75.6
Medtr6g047800 Medicago truncatula HOM05D003958 ORTHO05D004864 2.8e-127 459.1 309 74.1
THA.LOC104821089 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 6.3e-127 458.0 313 72.5
Aa31LG11G15350 Aethionema arabicum HOM05D003958 ORTHO05D004864 1.4e-126 456.8 319 71.2
AT5G14600 Arabidopsis thaliana HOM05D003958 ORTHO05D004864 2.4e-126 456.1 319 71.8
C09p62510 Brassica napus HOM05D003958 ORTHO05D004864 2.4e-126 456.1 318 71.1
THA.LOC104802398 Tarenaya hassleriana HOM05D003958 ORTHO05D004864 3.1e-126 455.7 314 72.9
A10p24040 Brassica napus HOM05D003958 ORTHO05D004864 5.3e-126 454.9 320 70.3
Glyma.15G078000 Glycine max HOM05D003958 ORTHO05D004864 9.1e-126 454.1 308 74.0
AUR62023705 Chenopodium quinoa HOM05D003958 ORTHO05D004864 1.2e-125 453.8 299 73.9
BraA10t44467Z Brassica rapa HOM05D003958 ORTHO05D004864 2.0e-125 453.0 320 70.0
Phvul.006G181700 Phaseolus vulgaris HOM05D003958 ORTHO05D004864 2.0e-125 453.0 309 73.1
Carub.0006s1277 Capsella rubella HOM05D003958 ORTHO05D004864 3.4e-125 452.2 321 70.1
Sabra18G0101000 Salix brachista HOM05D003958 ORTHO05D004864 1.3e-124 450.3 279 78.1
AL6G25360 Arabidopsis lyrata HOM05D003958 ORTHO05D004864 1.7e-124 449.9 319 69.9
MD09G1029500 Malus domestica HOM05D003958 ORTHO05D004864 2.2e-124 449.5 279 78.5
Thhalv10014133m.g Eutrema salsugineum HOM05D003958 ORTHO05D004864 3.8e-124 448.7 318 70.8
ATR0057G029 Amborella trichopoda HOM05D003958 ORTHO05D004864 6.5e-124 448.0 310 72.3
CARHR198720 Cardamine hirsuta HOM05D003958 ORTHO05D004864 6.5e-124 448.0 322 68.9
SGA_v2.0_scaffold196G40937 Striga asiatica HOM05D003958 ORTHO05D004864 6.5e-124 448.0 312 72.4
BolC9t59091H Brassica oleracea HOM05D003958 ORTHO05D004864 3.2e-123 445.7 325 68.6
Cfa007405 Carpinus fangiana HOM05D003958 ORTHO05D004864 2.1e-122 443.0 246 86.2
Sp6g29430 Schrenkiella parvula HOM05D003958 ORTHO05D004864 7.9e-122 441.0 315 69.2
Sc03g0007660 Simmondsia chinensis HOM05D003958 ORTHO05D004864 1.0e-121 440.7 309 70.6
BcaNung03113 Brassica carinata HOM05D003958 ORTHO05D004864 1.1e-120 437.2 318 68.9
FAN14G0618 Fragaria x ananassa HOM05D003958 ORTHO05D004864 3.3e-120 435.6 273 78.8
Zm00001eb071120 Zea mays HOM05D003958 ORTHO05D004864 4.1e-118 428.7 321 66.0
FAN09G1134 Fragaria x ananassa HOM05D003958 ORTHO05D004864 4.5e-117 425.2 259 79.9
Sabra18G0098900 Salix brachista HOM05D003958 ORTHO05D004864 1.2e-114 417.2 260 76.9
BcaC03g13470 Brassica carinata HOM05D003958 ORTHO05D004864 4.0e-113 412.1 309 66.7
Os04g0319600 Oryza sativa ssp. japonica HOM05D003958 ORTHO05D004864 5.2e-113 411.8 323 63.8
Gorai.013G008200 Gossypium raimondii HOM05D003958 ORTHO05D004864 2.6e-112 409.5 306 67.0
SEGI_01237 Sequoiadendron giganteum HOM05D003958 ORTHO05D004864 4.8e-111 405.2 322 64.0
CSS0027303 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 7.2e-107 391.3 309 66.3
arahy.Tifrunner.gnm1.ann1.8Z0BSJ Arachis hypogaea HOM05D003958 ORTHO05D004864 1.2e-106 390.6 310 66.1
Dinv35088 Davidia involucrata HOM05D003958 ORTHO05D004864 3.0e-105 386.0 309 66.0
MD17G1031500 Malus domestica HOM05D003958 ORTHO05D004864 4.8e-103 378.6 217 84.3
AagrBONN_evm.TU.Sc2ySwM_344.690 Anthoceros agrestis HOM05D003958 ORTHO05D004864 2.7e-101 372.9 309 59.9
Medtr2g014590 Medicago truncatula HOM05D003958 ORTHO05D004864 5.9e-101 371.7 232 78.0
HPP92_013732 Vanilla planifolia HOM05D003958 ORTHO05D004864 7.7e-101 371.3 225 75.6
Pp3c18_5220 Physcomitrium patens HOM05D003958 ORTHO05D004864 1.7e-100 370.2 319 60.8
SMO361G0280 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 5.5e-99 365.2 301 61.5
Mapoly0053s0094 Marchantia polymorpha HOM05D003958 ORTHO05D004864 1.6e-98 363.6 356 53.7
SMO361G0823 Selaginella moellendorffii HOM05D003958 ORTHO05D004864 3.6e-98 362.5 301 61.1
arahy.Tifrunner.gnm1.ann1.M5ZQAR Arachis hypogaea HOM05D003958 ORTHO05D004864 1.7e-87 327.0 222 74.8
arahy.Tifrunner.gnm1.ann1.Z5MU8N Arachis hypogaea HOM05D003958 ORTHO05D004864 2.9e-87 326.2 204 79.9
SGA_v2.0_scaffold34G13865 Striga asiatica HOM05D003958 ORTHO05D004864 1.4e-86 323.9 321 56.1
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 7.0e-86 321.6 235 66.0
unitig_62.g23558 Utricularia gibba HOM05D003958 ORTHO05D004864 3.7e-79 299.3 208 72.1
MCO10G191 Micromonas commoda HOM05D003958 ORTHO05D004864 6.0e-77 292.0 316 50.6
Atru.chr6.2249 Acer truncatum HOM05D003958 ORTHO05D004864 1.7e-76 290.4 165 84.8
Cre05.g244236 Chlamydomonas reinhardtii HOM05D003958 ORTHO05D004864 1.2e-74 284.3 235 60.0
GSVIVG01032441001 Vitis vinifera HOM05D000462 ORTHO05D002607 1.1e-70 271.2 157 84.1
PRCOL_00006622 Prasinoderma coloniale HOM05D003958 ORTHO05D004864 2.5e-67 260.0 346 44.2
arahy.Tifrunner.gnm1.ann1.FV4QAS Arachis hypogaea HOM05D003958 ORTHO05D004864 1.6e-66 257.3 171 77.2
Ah.07g203270 Amaranthus hybridus HOM05D003958 ORTHO05D004864 8.4e-63 245.0 150 78.7
Eucgr.L02705 Eucalyptus grandis HOM05D003958 ORTHO05D004864 1.9e-62 243.8 171 71.3
Ah.07g203280 Amaranthus hybridus HOM05D003958 ORTHO05D004864 1.6e-61 240.7 165 70.9
Gohir.A10G243400 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.8e-57 227.3 134 80.6
Sopen06g018800 Solanum pennellii HOM05D003958 ORTHO05D004864 6.4e-55 218.8 131 86.3
Haze_26162 Corylus avellana HOM05D003958 ORTHO05D004864 1.0e-52 211.5 292 42.8
Gohir.A03G000004 Gossypium hirsutum HOM05D003958 ORTHO05D004864 9.9e-48 194.9 112 83.9
Gohir.A01G232100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.3e-47 194.5 116 79.3
Gohir.D11G349300 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.8e-47 193.0 121 76.0
Gorai.004G293900 Gossypium raimondii HOM05D003958 ORTHO05D004864 4.9e-47 192.6 121 76.0
Gorai.006G274500 Gossypium raimondii HOM05D003958 ORTHO05D004864 4.9e-47 192.6 121 76.0
Gorai.007G380200 Gossypium raimondii HOM05D003958 ORTHO05D004864 6.4e-47 192.2 116 78.4
Gohir.D08G275428 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.9e-46 190.7 121 75.2
Gohir.D09G250100 Gossypium hirsutum HOM05D003958 ORTHO05D004864 5.4e-46 189.1 113 79.6
Gohir.D01G222101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.2e-45 188.0 113 79.6
Gorai.N017600 Gossypium raimondii HOM05D003958 ORTHO05D004864 7.9e-45 185.3 118 74.6
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.3e-44 183.7 298 41.6
Gohir.D03G178200 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.3e-44 183.7 113 76.1
BcaC01g04875 Brassica carinata HOM05D003958 ORTHO05D004864 1.1e-43 181.4 239 47.3
FAN14G4368 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.3e-43 179.9 157 60.5
Gohir.A06G000101 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.4e-39 165.2 93 86.0
Gohir.1Z049515 Gossypium hirsutum HOM05D003958 ORTHO05D015143 2.7e-37 160.2 97 77.3
Nitab4.5_0001556g0020 Nicotiana tabacum HOM05D003958 ORTHO05D004864 2.7e-37 160.2 81 96.3
Gorai.006G275300 Gossypium raimondii HOM05D003958 ORTHO05D015143 7.9e-37 158.7 97 76.3
FAN05G2568 Fragaria x ananassa HOM05D003958 ORTHO05D004864 3.8e-31 139.8 136 55.9
Gorai.001G000100 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.4e-30 137.9 84 77.4
Atru.chr6.2248 Acer truncatum HOM05D003958 ORTHO05D004864 2.3e-28 130.6 94 68.1
C03p32750 Brassica napus HOM05D003958 ORTHO05D004864 4.8e-26 122.9 95 63.2
BolC3t15610H Brassica oleracea HOM05D003958 ORTHO05D004864 4.8e-26 122.9 95 63.2
Gohir.D11G176600 Gossypium hirsutum HOM05D003958 ORTHO05D004864 8.5e-23 112.1 93 61.3
Gohir.A09G249500 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.9e-22 110.9 64 85.9
Gohir.1Z049410 Gossypium hirsutum HOM05D003958 ORTHO05D004864 4.2e-22 109.8 64 85.9
Solyc06g053690.3 Solanum lycopersicum HOM05D003958 ORTHO05D004864 7.2e-22 109.0 63 84.1
Gohir.D07G000766 Gossypium hirsutum HOM05D003958 ORTHO05D004864 2.7e-21 107.1 93 60.2
CSS0019434 Camellia sinensis var. sinensis HOM05D003958 ORTHO05D004864 6.7e-20 102.4 74 73.0
Gorai.013G272500 Gossypium raimondii HOM05D003958 ORTHO05D004864 1.1e-19 101.7 93 58.1
Gorai.007G000600 Gossypium raimondii HOM05D001392 ORTHO05D014312 4.8e-18 96.3 79 59.5
Gohir.D08G275100 Gossypium hirsutum HOM05D003958 ORTHO05D005872 1.1e-17 95.1 50 88.0
Gorai.N025700 Gossypium raimondii HOM05D003958 ORTHO05D005872 1.1e-17 95.1 50 88.0
FAN05G2311 Fragaria x ananassa HOM05D003958 ORTHO05D004864 1.4e-17 94.7 107 50.5
Gohir.1Z049564 Gossypium hirsutum HOM05D003958 ORTHO05D004864 3.1e-17 93.6 50 86.0
Gohir.1Z049570 Gossypium hirsutum HOM05D003958 ORTHO05D005872 3.1e-17 93.6 50 86.0
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 6.9e-17 92.4 47 87.2
Oeu056467.1 Olea europaea HOM05D003958 ORTHO05D004864 1.2e-13 81.6 224 28.6
AL4G39060 Arabidopsis lyrata HOM05D000001 ORTHO05D009069 4.5e-08 63.2 88 47.7


User provided reference genes

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