Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 3.4e-220 768.1 405 100.0
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.6e-209 732.6 405 96.0
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 1.1e-178 630.2 405 85.4
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 8.0e-177 624.0 377 89.4
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 1.8e-176 622.9 377 89.1
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 6.8e-176 620.9 377 88.6
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 3.5e-172 608.6 422 81.0
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 5.9e-172 607.8 398 83.2
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 6.1e-169 597.8 377 84.4
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 1.0e-168 597.0 407 79.4
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 1.4e-168 596.7 389 82.8
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 1.8e-168 596.3 412 79.6
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 3.0e-168 595.5 400 81.5
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 5.2e-168 594.7 412 79.1
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 5.2e-168 594.7 380 84.2
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 5.2e-168 594.7 406 81.0
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 2.6e-167 592.4 390 81.3
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 3.4e-167 592.0 398 81.2
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 7.5e-167 590.9 376 83.8
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 1.3e-166 590.1 389 82.0
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 4.9e-166 588.2 387 82.9
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 1.1e-165 587.0 399 81.0
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 1.1e-165 587.0 378 83.3
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 2.4e-165 585.9 398 80.4
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 9.2e-165 583.9 376 83.5
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 1.0e-163 580.5 397 80.6
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 1.3e-163 580.1 395 79.2
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 1.7e-163 579.7 361 85.6
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 3.0e-163 578.9 397 79.8
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 6.6e-163 577.8 377 82.2
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 8.6e-163 577.4 406 77.3
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 8.6e-163 577.4 400 78.0
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 8.6e-163 577.4 394 79.2
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 1.9e-162 576.2 392 79.8
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 3.3e-162 575.5 378 81.2
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 3.3e-162 575.5 401 78.8
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 4.3e-162 575.1 396 79.0
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 5.6e-162 574.7 372 80.4
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 9.5e-162 573.9 372 82.3
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 1.2e-161 573.5 388 79.9
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 1.6e-161 573.2 375 81.6
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 4.7e-161 571.6 394 79.2
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 4.7e-161 571.6 406 75.4
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 6.2e-161 571.2 381 79.5
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 1.1e-160 570.5 380 81.1
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 1.1e-160 570.5 394 78.2
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 1.4e-160 570.1 411 76.6
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 2.3e-160 569.3 406 76.4
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 2.3e-160 569.3 403 76.2
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 3.1e-160 568.9 378 81.0
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 5.2e-160 568.2 327 89.9
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 8.9e-160 567.4 392 77.6
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 8.9e-160 567.4 405 76.8
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 1.2e-159 567.0 376 80.9
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 1.5e-159 566.6 380 80.5
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 1.5e-159 566.6 357 84.0
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 2.0e-159 566.2 353 84.1
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 2.0e-159 566.2 385 78.4
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 3.4e-159 565.5 406 76.4
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 4.4e-159 565.1 379 80.5
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 4.4e-159 565.1 381 79.8
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 4.4e-159 565.1 383 79.9
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 7.5e-159 564.3 410 75.6
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 9.8e-159 563.9 404 76.0
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 2.2e-158 562.8 395 77.0
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 2.2e-158 562.8 374 80.5
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 2.9e-158 562.4 359 82.2
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 2.9e-158 562.4 359 82.2
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 6.4e-158 561.2 389 77.9
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 6.4e-158 561.2 410 75.9
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 1.1e-157 560.5 407 74.9
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 1.4e-157 560.1 401 77.8
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 3.2e-157 558.9 406 74.9
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 3.2e-157 558.9 402 75.4
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 3.2e-157 558.9 402 75.4
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 5.4e-157 558.1 366 81.4
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 1.2e-156 557.0 380 78.2
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.2e-156 557.0 429 73.0
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 1.2e-156 557.0 396 76.8
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 2.0e-156 556.2 379 79.4
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 2.7e-156 555.8 405 74.6
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 3.5e-156 555.4 383 77.3
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 3.5e-156 555.4 376 79.5
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 6.0e-156 554.7 402 74.6
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 6.0e-156 554.7 383 78.6
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 1.0e-155 553.9 375 79.7
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.0e-155 553.9 374 78.3
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 1.3e-155 553.5 377 79.3
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.7e-155 553.1 408 74.0
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.7e-155 553.1 408 74.0
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 2.3e-155 552.7 380 77.9
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 2.3e-155 552.7 334 85.0
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 3.9e-155 552.0 377 79.0
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 5.0e-155 551.6 397 75.3
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 1.1e-154 550.4 398 75.4
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.9e-154 549.7 408 73.5
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 1.9e-154 549.7 408 73.5
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 4.3e-154 548.5 358 81.0
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 1.6e-153 546.6 377 80.1
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 2.8e-153 545.8 379 78.1
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 4.7e-153 545.0 391 76.7
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 4.7e-153 545.0 373 77.7
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 6.2e-153 544.7 414 72.5
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 1.4e-152 543.5 379 77.6
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 1.2e-151 540.4 379 76.0
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 2.9e-150 535.8 326 84.0
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 4.1e-149 531.9 297 92.6
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 7.8e-148 527.7 376 75.8
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 5.6e-146 521.5 389 73.0
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 9.5e-146 520.8 376 76.9
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 5.2e-144 515.0 374 75.7
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 4.4e-143 511.9 307 85.3
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 3.8e-142 508.8 375 76.0
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 2.4e-141 506.1 297 87.5
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 1.6e-140 503.4 297 86.2
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 5.6e-138 495.0 371 72.2
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 2.8e-137 492.7 372 70.4
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 3.1e-136 489.2 343 76.7
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 4.4e-135 485.3 354 75.1
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 9.9e-135 484.2 353 74.2
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 1.3e-134 483.8 333 74.8
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 5.8e-127 458.4 415 65.5
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 1.4e-125 453.8 422 60.9
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 4.2e-125 452.2 343 69.1
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 6.9e-120 434.9 380 67.1
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 2.2e-118 429.9 272 84.9
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 1.9e-117 426.8 246 91.1
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 1.5e-114 417.2 321 69.8
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 3.8e-110 402.5 353 65.2
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 3.5e-108 396.0 333 61.9
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 9.7e-106 387.9 289 67.8
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 2.8e-97 359.8 309 60.8
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 1.4e-91 340.9 198 90.9
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 3.1e-80 303.1 198 81.8
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 3.1e-80 303.1 198 81.8
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 1.0e-75 288.1 165 88.5
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 4.0e-67 259.6 376 48.4
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 1.2e-63 248.1 297 45.1
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 1.6e-60 237.7 129 90.7
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 2.8e-57 226.9 296 43.6
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 8.6e-54 215.3 154 76.0
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 8.6e-54 215.3 324 41.4
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.2e-52 211.5 178 68.0
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 9.8e-50 201.8 220 58.6
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.4e-40 171.4 149 66.4
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.4e-40 171.4 213 52.6
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 5.6e-37 159.5 129 69.8
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 7.8e-31 139.0 80 87.5
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 2.4e-27 127.5 121 58.7
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 7.6e-18 95.9 75 69.3
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 3.8e-17 93.6 48 97.9
COL.COLO4_37924 Corchorus olitorius HOM05D004740 ORTHO05D005991 8.7e-14 82.4 77 62.3
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 3.3e-13 80.5 90 52.2
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 1.1e-11 75.5 64 65.6
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 9.9e-10 68.9 42 69.0
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 4.9e-09 66.6 42 81.0


User provided reference genes

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