Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 4.5e-52 207.6 102 100.0
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 8.5e-51 203.4 102 98.0
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 1.7e-46 189.1 102 88.2
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 2.2e-46 188.7 102 90.2
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 2.2e-46 188.7 102 90.2
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 2.5e-42 175.3 97 86.6
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 7.2e-42 173.7 97 86.6
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 4.7e-41 171.0 92 85.9
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 6.1e-41 170.6 92 88.0
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 1.0e-40 169.9 92 85.9
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 1.4e-40 169.5 92 85.9
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 1.8e-40 169.1 92 85.9
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 1.8e-40 169.1 92 84.8
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 4.0e-40 167.9 92 82.6
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 6.7e-40 167.2 92 85.9
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 6.7e-40 167.2 96 83.3
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 8.8e-40 166.8 96 80.2
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 8.8e-40 166.8 96 80.2
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 8.8e-40 166.8 96 80.2
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 1.2e-39 166.4 97 80.4
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 1.5e-39 166.0 92 87.0
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 2.0e-39 165.6 98 78.6
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 2.0e-39 165.6 92 83.7
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 2.0e-39 165.6 92 84.8
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 2.0e-39 165.6 97 79.4
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 2.6e-39 165.2 92 84.8
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 4.4e-39 164.5 97 79.4
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 5.7e-39 164.1 92 80.4
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 7.5e-39 163.7 96 79.2
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 7.5e-39 163.7 98 80.6
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 7.5e-39 163.7 97 78.4
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 9.7e-39 163.3 92 82.6
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 9.7e-39 163.3 92 83.7
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 9.7e-39 163.3 96 79.2
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 1.3e-38 162.9 92 80.4
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 1.7e-38 162.5 96 78.1
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.7e-38 162.5 92 79.3
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 1.7e-38 162.5 92 79.3
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 1.7e-38 162.5 92 83.7
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 2.2e-38 162.2 92 80.4
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 2.2e-38 162.2 92 81.5
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.2e-38 162.2 92 81.5
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 2.2e-38 162.2 95 78.9
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 2.2e-38 162.2 92 79.3
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 2.2e-38 162.2 92 83.7
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 2.2e-38 162.2 97 77.3
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 2.8e-38 161.8 92 80.4
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 2.8e-38 161.8 92 80.4
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 2.8e-38 161.8 92 80.4
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 2.8e-38 161.8 92 80.4
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 2.8e-38 161.8 92 81.5
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.8e-38 161.8 88 84.1
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 2.8e-38 161.8 92 83.7
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 3.7e-38 161.4 92 82.6
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 3.7e-38 161.4 92 79.3
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 3.7e-38 161.4 101 74.3
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 4.8e-38 161.0 96 78.1
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 4.8e-38 161.0 92 81.5
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 8.2e-38 160.2 92 81.5
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 8.2e-38 160.2 92 79.3
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 8.2e-38 160.2 92 78.3
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 8.2e-38 160.2 99 74.7
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 8.2e-38 160.2 101 74.3
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 1.1e-37 159.8 92 81.5
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 1.1e-37 159.8 92 81.5
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 1.1e-37 159.8 101 73.3
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 1.4e-37 159.5 92 80.4
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 1.4e-37 159.5 92 81.5
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 1.4e-37 159.5 92 80.4
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 1.8e-37 159.1 92 80.4
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 1.8e-37 159.1 92 80.4
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 1.8e-37 159.1 92 79.3
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 3.1e-37 158.3 92 80.4
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 3.1e-37 158.3 92 78.3
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 3.1e-37 158.3 96 79.2
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 3.1e-37 158.3 92 80.4
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 3.1e-37 158.3 92 78.3
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 4.1e-37 157.9 95 74.7
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 4.1e-37 157.9 92 79.3
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 4.1e-37 157.9 92 79.3
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 4.1e-37 157.9 92 78.3
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 4.1e-37 157.9 92 82.6
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 5.3e-37 157.5 92 80.4
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 5.3e-37 157.5 92 79.3
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 5.3e-37 157.5 101 73.3
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 9.1e-37 156.8 92 79.3
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 9.1e-37 156.8 92 77.2
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 9.1e-37 156.8 92 79.3
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 1.6e-36 156.0 97 76.3
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 2.0e-36 155.6 99 73.7
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 2.0e-36 155.6 97 75.3
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 2.7e-36 155.2 92 77.2
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.7e-36 155.2 92 79.3
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.7e-36 155.2 92 79.3
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 2.7e-36 155.2 92 79.3
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 2.7e-36 155.2 112 70.5
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 3.5e-36 154.8 92 79.3
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 3.5e-36 154.8 101 74.3
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 5.9e-36 154.1 92 78.3
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 5.9e-36 154.1 92 79.3
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 1.0e-35 153.3 92 77.2
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 1.3e-35 152.9 92 76.1
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 2.2e-35 152.1 92 77.2
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 2.9e-35 151.8 92 70.7
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 2.9e-35 151.8 92 79.3
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.9e-35 151.8 95 72.6
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 5.0e-35 151.0 84 82.1
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 6.5e-35 150.6 89 75.3
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 1.5e-34 149.4 92 73.9
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.6e-33 146.0 92 76.1
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 2.1e-33 145.6 76 89.5
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 3.6e-33 144.8 92 77.2
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 1.0e-32 143.3 87 75.9
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 3.0e-32 141.7 92 78.3
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 8.8e-32 140.2 84 77.4
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 1.2e-31 139.8 92 66.3
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 1.2e-31 139.8 92 66.3
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 1.5e-31 139.4 76 84.2
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 1.3e-30 136.3 124 57.3
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 7.7e-28 127.1 69 82.6
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 4.7e-25 117.9 92 57.6
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 2.3e-24 115.5 85 60.0
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 1.2e-23 113.2 87 63.2
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 1.2e-23 113.2 87 63.2
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 1.2e-23 113.2 87 63.2
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 1.2e-23 113.2 87 63.2
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.6e-23 112.1 59 88.1
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 5.7e-23 110.9 60 85.0
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 7.5e-23 110.5 86 60.5
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 4.9e-22 107.8 72 66.7
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 1.8e-21 105.9 64 76.6
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 9.2e-21 103.6 59 78.0
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 9.2e-21 103.6 59 78.0
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 1.6e-20 102.8 51 92.2
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 2.0e-20 102.4 104 49.0
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 3.5e-20 101.7 91 52.7
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 3.3e-18 95.1 89 49.4
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 2.8e-17 92.0 63 69.8
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 3.6e-17 91.7 92 45.7
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 2.9e-14 82.0 59 59.3
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 3.5e-12 75.1 85 42.4
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 5.0e-11 71.2 84 39.3
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 1.1e-08 63.5 86 37.2
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 2.2e-06 55.8 36 69.4


User provided reference genes

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