Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002718g0040 Nicotiana tabacum HOM05D005372 ORTHO05D006593 9.6e-86 320.1 158 100.0
Nitab4.5_0000744g0090 Nicotiana tabacum HOM05D005372 ORTHO05D006593 1.9e-78 295.8 158 91.8
PGSC0003DMG400030429 Solanum tuberosum HOM05D005372 ORTHO05D006593 9.0e-76 287.0 158 87.3
Sopen06g033010 Solanum pennellii HOM05D005372 ORTHO05D006593 1.5e-75 286.2 158 87.3
Solyc06g076620.3 Solanum lycopersicum HOM05D005372 ORTHO05D006593 7.7e-75 283.9 158 86.1
CAN.G394.95 Capsicum annuum HOM05D005372 ORTHO05D006593 8.8e-63 243.8 160 76.9
Nitab4.5_0000933g0130 Nicotiana tabacum HOM05D005372 ORTHO05D006593 8.5e-58 227.3 178 68.5
Peaxi162Scf01058g00152 Petunia axillaris HOM05D005372 ORTHO05D006593 9.1e-52 207.2 160 68.8
TWI79G0177 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 3.8e-50 201.8 158 60.8
Gohir.D07G106400 Gossypium hirsutum HOM05D005372 ORTHO05D006593 5.0e-50 201.4 158 63.3
Migut.K01340 Erythranthe guttata HOM05D005372 ORTHO05D006593 1.5e-49 199.9 144 71.5
Cc01_g13660 Coffea canephora HOM05D005372 ORTHO05D006593 2.5e-49 199.1 158 63.3
Gorai.001G114500 Gossypium raimondii HOM05D005372 ORTHO05D006593 4.2e-49 198.4 158 62.7
MSTRG.14035 Avicennia marina HOM05D005372 ORTHO05D006593 3.6e-48 195.3 162 62.3
THA.LOC104810736 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 8.0e-48 194.1 155 62.6
CiPaw.14G062800 Carya illinoinensis HOM05D005372 ORTHO05D006593 1.0e-47 193.7 137 70.8
BraA02t05820Z Brassica rapa HOM05D005372 ORTHO05D006593 1.8e-47 193.0 158 60.8
A02p07420 Brassica napus HOM05D005372 ORTHO05D006593 3.0e-47 192.2 158 60.1
BcaB05g22467 Brassica carinata HOM05D005372 ORTHO05D006593 4.0e-47 191.8 158 62.0
Cpa.g.sc112.93 Carica papaya HOM05D005372 ORTHO05D006593 6.8e-47 191.0 160 61.2
AT5G52370 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 2.6e-46 189.1 134 67.2
TWI75G1302 Tripterygium wilfordii HOM05D005372 ORTHO05D006593 2.6e-46 189.1 155 59.4
Phvul.011G039001 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 7.5e-46 187.6 158 60.1
Aa31LG1G11690 Aethionema arabicum HOM05D005372 ORTHO05D006593 2.8e-45 185.7 158 62.0
Rhsim13G0075100 Rhododendron simsii HOM05D005372 ORTHO05D006593 2.8e-45 185.7 139 67.6
AT5G58990 Arabidopsis thaliana HOM05D005372 ORTHO05D006593 3.7e-45 185.3 159 58.5
Sabra09G0028200 Salix brachista HOM05D005372 ORTHO05D006593 3.7e-45 185.3 155 59.4
Duzib168G1893 Durio zibethinus HOM05D005372 ORTHO05D006593 4.8e-45 184.9 158 58.9
BcaC03g14063 Brassica carinata HOM05D005372 ORTHO05D006593 6.3e-45 184.5 160 59.4
C02p12980 Brassica napus HOM05D005372 ORTHO05D006593 6.3e-45 184.5 160 59.4
CANSAT54G2064 Cannabis sativa HOM05D005372 ORTHO05D006593 1.1e-44 183.7 158 58.9
SalBow4G1938 Salvia bowleyana HOM05D005372 ORTHO05D006593 1.1e-44 183.7 151 62.3
Thecc.09G309200 Theobroma cacao HOM05D005372 ORTHO05D006593 1.1e-44 183.7 158 58.9
AL8G35370 Arabidopsis lyrata HOM05D005372 ORTHO05D006593 1.4e-44 183.3 159 58.5
CARHR285220 Cardamine hirsuta HOM05D005372 ORTHO05D006593 1.4e-44 183.3 155 58.7
Sp6g20690 Schrenkiella parvula HOM05D005372 ORTHO05D006593 1.4e-44 183.3 158 60.1
unitig_26.g9774 Utricularia gibba HOM05D005372 ORTHO05D006593 1.4e-44 183.3 118 72.9
Carub.0008s1963 Capsella rubella HOM05D005372 ORTHO05D006593 4.1e-44 181.8 135 63.7
Gohir.A07G102200 Gossypium hirsutum HOM05D005372 ORTHO05D006593 4.1e-44 181.8 158 59.5
BcaB08g36298 Brassica carinata HOM05D005372 ORTHO05D006593 5.4e-44 181.4 152 60.5
Thhalv10014944m.g Eutrema salsugineum HOM05D005372 ORTHO05D006593 7.0e-44 181.0 134 64.9
BraA03t10503Z Brassica rapa HOM05D005372 ORTHO05D006593 9.1e-44 180.6 134 64.2
HanXRQChr04g0109301 Helianthus annuus HOM05D005372 ORTHO05D006593 9.1e-44 180.6 130 66.2
A03p11910 Brassica napus HOM05D005372 ORTHO05D006593 1.2e-43 180.3 134 66.4
MD03G1080100 Malus domestica HOM05D005372 ORTHO05D006593 1.6e-43 179.9 158 59.5
BolC3t13848H Brassica oleracea HOM05D005372 ORTHO05D006593 2.0e-43 179.5 136 64.7
Dinv17075 Davidia involucrata HOM05D005372 ORTHO05D006593 5.9e-43 177.9 164 56.7
Dinv43019 Davidia involucrata HOM05D005372 ORTHO05D006593 5.9e-43 177.9 164 56.7
Dinv43078 Davidia involucrata HOM05D005372 ORTHO05D006593 5.9e-43 177.9 164 56.7
MD11G1084700 Malus domestica HOM05D005372 ORTHO05D006593 5.9e-43 177.9 158 58.2
C03p14010 Brassica napus HOM05D005372 ORTHO05D006593 1.0e-42 177.2 136 64.0
THA.LOC104799412 Tarenaya hassleriana HOM05D005372 ORTHO05D006593 1.0e-42 177.2 150 58.7
FAN25G0461 Fragaria x ananassa HOM05D005372 ORTHO05D006593 1.3e-42 176.8 140 60.7
Potri.009G040100 Populus trichocarpa HOM05D005372 ORTHO05D006593 1.7e-42 176.4 158 58.2
FvH4_3g37450 Fragaria vesca HOM05D005372 ORTHO05D006593 3.8e-42 175.3 149 56.4
Nn3g19715 Nelumbo nucifera HOM05D005372 ORTHO05D006593 3.8e-42 175.3 148 59.5
Actinidia25121 Actinidia chinensis HOM05D005372 ORTHO05D006593 8.5e-42 174.1 161 58.4
BcaB01g04621 Brassica carinata HOM05D005372 ORTHO05D006593 1.1e-41 173.7 135 63.7
Actinidia08556 Actinidia chinensis HOM05D005372 ORTHO05D006593 3.2e-41 172.2 161 57.8
Hma1.2p1_0543F.1_g175310 Hydrangea macrophylla HOM05D005372 ORTHO05D006593 4.2e-41 171.8 160 56.2
SGA_v2.0_scaffold35G14025 Striga asiatica HOM05D005372 ORTHO05D006593 4.2e-41 171.8 151 58.3
Atru.chr3.4040 Acer truncatum HOM05D005372 ORTHO05D006593 5.5e-41 171.4 161 55.9
SGA_v2.0_scaffold8G04342 Striga asiatica HOM05D005372 ORTHO05D006593 5.5e-41 171.4 162 56.2
CSS0039141 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 7.2e-41 171.0 164 57.3
Lalb_Chr14g0372091 Lupinus albus HOM05D005372 ORTHO05D006593 1.2e-40 170.2 157 56.7
Prupe.6G065000 Prunus persica HOM05D005372 ORTHO05D006593 1.2e-40 170.2 161 57.1
RcHm_v2.0_Chr5g0067341 Rosa chinensis HOM05D005372 ORTHO05D006593 1.2e-40 170.2 143 58.0
TAR636G0867 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.6e-40 169.9 155 56.1
ClCG02G019810 Citrullus lanatus HOM05D005372 ORTHO05D006593 2.1e-40 169.5 158 53.8
CSS0037054 Camellia sinensis var. sinensis HOM05D005372 ORTHO05D006593 2.7e-40 169.1 164 56.7
SalBow6G3269 Salvia bowleyana HOM05D005372 ORTHO05D006593 3.6e-40 168.7 160 55.0
Hund04902 Selenicereus undatus HOM05D005372 ORTHO05D006593 4.7e-40 168.3 137 64.2
PGR119G2477 Punica granatum HOM05D005372 ORTHO05D006593 8.0e-40 167.5 158 59.5
Manes.02G123700 Manihot esculenta HOM05D005372 ORTHO05D006593 1.4e-39 166.8 158 54.4
CDE07G0920 Ceratophyllum demersum HOM05D005372 ORTHO05D006593 2.3e-39 166.0 134 61.2
PSO541G6474 Papaver somniferum HOM05D005372 ORTHO05D006593 4.0e-39 165.2 147 59.2
HanXRQChr03g0083951 Helianthus annuus HOM05D005372 ORTHO05D006593 6.8e-39 164.5 128 61.7
Psat5g285800 Pisum sativum HOM05D005372 ORTHO05D006593 6.8e-39 164.5 158 51.3
Medtr2g097890 Medicago truncatula HOM05D005372 ORTHO05D006593 8.8e-39 164.1 158 51.9
AUR62001715 Chenopodium quinoa HOM05D005372 ORTHO05D006593 1.5e-38 163.3 137 61.3
Oeu017419.1 Olea europaea HOM05D005372 ORTHO05D006593 1.5e-38 163.3 139 56.8
PSO675G4385 Papaver somniferum HOM05D005372 ORTHO05D006593 3.4e-38 162.2 148 56.1
Potri.001G246800 Populus trichocarpa HOM05D005372 ORTHO05D006593 4.4e-38 161.8 162 54.3
Phvul.011G206600 Phaseolus vulgaris HOM05D005372 ORTHO05D006593 7.5e-38 161.0 100 74.0
Glyma.15G033200 Glycine max HOM05D005372 ORTHO05D006593 9.8e-38 160.6 158 53.8
VMungo1127G1276 Vigna mungo HOM05D005372 ORTHO05D006593 1.3e-37 160.2 103 68.9
Ah.13g070300 Amaranthus hybridus HOM05D005372 ORTHO05D006593 1.7e-37 159.8 81 87.7
Cfa011626 Carpinus fangiana HOM05D005372 ORTHO05D006593 1.7e-37 159.8 142 57.7
Ciclev10029469m.g Citrus clementina HOM05D005372 ORTHO05D006593 2.2e-37 159.5 146 52.7
TPR.G6862 Trifolium pratense HOM05D005372 ORTHO05D006593 2.2e-37 159.5 158 51.3
Eucgr.J01954 Eucalyptus grandis HOM05D005372 ORTHO05D006593 3.7e-37 158.7 161 54.0
FAN16G3555 Fragaria x ananassa HOM05D005372 ORTHO05D006593 4.9e-37 158.3 168 50.0
Glyma.11G111000 Glycine max HOM05D005372 ORTHO05D006593 4.9e-37 158.3 92 75.0
Lj6g0015977 Lotus japonicus HOM05D005372 ORTHO05D006593 4.9e-37 158.3 143 55.2
arahy.Tifrunner.gnm1.ann1.IGF4QT Arachis hypogaea HOM05D005372 ORTHO05D006593 6.3e-37 157.9 104 69.2
FAN11G0559 Fragaria x ananassa HOM05D005372 ORTHO05D006593 6.3e-37 157.9 151 53.0
arahy.Tifrunner.gnm1.ann1.UR5XNC Arachis hypogaea HOM05D005372 ORTHO05D006593 1.1e-36 157.1 102 69.6
ECA247G0538 Erigeron canadensis HOM05D005372 ORTHO05D006593 1.4e-36 156.8 90 73.3
EL10Ac7g16097 Beta vulgaris HOM05D005372 ORTHO05D006593 1.8e-36 156.4 82 85.4
Lj3g0018318 Lotus japonicus HOM05D005372 ORTHO05D006593 2.4e-36 156.0 160 54.4
Lalb_Chr24g0397111 Lupinus albus HOM05D005372 ORTHO05D006593 2.4e-36 156.0 132 59.1
FAN21G1258 Fragaria x ananassa HOM05D005372 ORTHO05D006593 3.1e-36 155.6 143 55.2
Glyma.13G341200 Glycine max HOM05D005372 ORTHO05D006593 4.1e-36 155.2 148 57.4
Lsat_1_v5_gn_9_25321 Lactuca sativa HOM05D005372 ORTHO05D006593 7.0e-36 154.5 96 67.7
VMungo1127G1643 Vigna mungo HOM05D005372 ORTHO05D006593 7.0e-36 154.5 159 51.6
Aqoxy4G02649 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 9.2e-36 154.1 102 67.6
CsaV3_6G016530 Cucumis sativus L. HOM05D005372 ORTHO05D006593 9.2e-36 154.1 129 56.6
Aqoxy1G00762 Aquilegia oxysepala HOM05D005372 ORTHO05D006593 2.7e-35 152.5 154 50.6
Sabra16G0149900 Salix brachista HOM05D005372 ORTHO05D006593 4.5e-35 151.8 166 53.0
TAR633G2482 Trochodendron aralioides HOM05D005372 ORTHO05D006593 1.0e-34 150.6 154 51.3
MELO3C025881.2 Cucumis melo HOM05D005372 ORTHO05D006593 2.3e-34 149.4 132 53.0
Sed0010324 Sechium edule HOM05D005372 ORTHO05D006593 8.6e-34 147.5 150 48.7
BolC2t07410H Brassica oleracea HOM05D005372 ORTHO05D006593 7.3e-33 144.4 170 50.0
MBI14_g28605_MAGBIO Magnolia biondii HOM05D005372 ORTHO05D006593 7.3e-33 144.4 78 78.2
C09p51220 Brassica napus HOM05D005372 ORTHO05D006593 4.7e-32 141.7 134 56.7
Zm00001eb066290 Zea mays HOM05D005372 ORTHO05D006593 2.6e-30 136.0 105 60.0
Dinv34320 Davidia involucrata HOM05D001226 ORTHO05D006593 3.4e-30 135.6 135 52.6
Os02g0481000 Oryza sativa ssp. japonica HOM05D005372 ORTHO05D006593 2.4e-28 129.4 93 62.4
Zm00001eb433670 Zea mays HOM05D005372 ORTHO05D006593 1.7e-26 123.2 121 51.2
Nn1g02876 Nelumbo nucifera HOM05D005372 ORTHO05D006593 2.3e-26 122.9 98 60.2
QL01p028939 Quercus lobata HOM05D005372 ORTHO05D006593 3.9e-26 122.1 109 59.6
Haze_24230 Corylus avellana HOM05D005372 ORTHO05D006593 1.6e-24 116.7 112 55.4
ATR0618G182 Amborella trichopoda HOM05D005372 ORTHO05D006593 6.2e-24 114.8 87 64.4
SHI05895 Sapria himalayana HOM05D005372 ORTHO05D006593 1.0e-23 114.0 134 47.0
Lj4P191T41 Lonicera japonica HOM05D005372 ORTHO05D006593 1.8e-23 113.2 52 88.5
DCAR_028257 Daucus carota HOM05D005372 ORTHO05D006593 2.3e-23 112.8 54 83.3
Oeu002454.1 Olea europaea HOM05D005372 ORTHO05D006593 1.2e-22 110.5 85 58.8
Sc06g0008390 Simmondsia chinensis HOM05D005372 ORTHO05D006593 1.2e-19 100.5 82 63.4
Mapoly0002s0283 Marchantia polymorpha HOM05D005372 ORTHO05D006593 1.0e-18 97.4 90 46.7
COL.COLO4_19070 Corchorus olitorius HOM05D005372 ORTHO05D006593 4.3e-17 92.0 159 38.4
vmacro03009 Vaccinium macrocarpon HOM05D005372 ORTHO05D006593 4.3e-17 92.0 163 41.1
AagrBONN_evm.TU.Sc2ySwM_228.2511 Anthoceros agrestis HOM05D005372 ORTHO05D006593 1.2e-16 90.5 82 52.4
Pp3c9_8860 Physcomitrium patens HOM05D005372 ORTHO05D006593 1.6e-16 90.1 104 45.2
BraA10t43707Z Brassica rapa HOM05D005372 ORTHO05D006593 1.1e-15 87.4 65 61.5
CBR_g8222 Chara braunii HOM05D005372 ORTHO05D006593 3.7e-13 79.0 118 38.1
Glyma.12G037300 Glycine max HOM05D005372 ORTHO05D006593 4.9e-13 78.6 98 46.9
MD06G1146500 Malus domestica HOM05D005372 ORTHO05D006593 8.3e-13 77.8 75 54.7
SMO111G0201 Selaginella moellendorffii HOM05D005372 ORTHO05D006593 1.1e-09 67.4 94 37.2
Dinv20930 Davidia involucrata HOM05D005372 ORTHO05D006593 9.5e-09 64.3 43 55.8
Zm00001eb217580 Zea mays HOM05D000360 ORTHO05D000234 9.5e-09 64.3 41 65.9
Dinv21014 Davidia involucrata HOM05D005372 ORTHO05D006593 1.6e-08 63.5 42 57.1
Zm00001eb023370 Zea mays HOM05D000798 ORTHO05D000659 3.6e-08 62.4 49 57.1


User provided reference genes

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