Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1523.5 815 100.0
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1443.3 815 94.6
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 0.0e+00 1380.9 817 89.5
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 0.0e+00 1377.1 817 89.1
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 0.0e+00 1317.4 824 86.2
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 0.0e+00 1283.5 811 84.8
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 0.0e+00 1242.3 817 82.3
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 0.0e+00 1149.4 818 74.8
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 0.0e+00 1144.4 819 74.7
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1135.2 821 73.8
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 0.0e+00 1130.9 821 72.4
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 0.0e+00 1127.5 821 71.5
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 0.0e+00 1117.4 821 71.7
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 0.0e+00 1112.8 820 71.2
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 0.0e+00 1108.6 844 71.7
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 0.0e+00 1103.2 823 71.6
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 0.0e+00 1102.8 819 72.3
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 0.0e+00 1100.9 787 74.5
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1098.2 821 72.1
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 0.0e+00 1097.8 819 71.7
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1097.8 820 71.0
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 0.0e+00 1094.7 857 68.8
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 0.0e+00 1093.2 815 71.2
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 0.0e+00 1087.8 822 70.7
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 0.0e+00 1085.9 822 70.7
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 0.0e+00 1085.5 822 70.3
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 0.0e+00 1085.5 822 69.5
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 0.0e+00 1082.4 817 70.7
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 0.0e+00 1082.0 821 70.4
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 0.0e+00 1078.5 820 68.5
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 0.0e+00 1077.4 820 68.4
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 0.0e+00 1077.4 818 70.2
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 5.6e-312 1074.3 820 68.7
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 1.1e-311 1072.8 819 69.4
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 3.9e-308 1061.2 827 67.4
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 5.2e-308 1060.8 829 69.5
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 2.2e-306 1055.4 817 70.1
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 1.8e-305 1052.4 820 69.0
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 1.8e-305 1052.4 819 70.0
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 4.1e-305 1051.2 817 68.9
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 2.6e-304 1048.5 844 68.1
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 7.7e-304 1047.0 813 69.2
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 8.5e-303 1043.5 820 68.0
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 2.5e-302 1042.0 820 66.5
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 2.5e-302 1042.0 823 66.5
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 4.2e-302 1041.2 824 68.6
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 3.0e-300 1035.0 821 67.8
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 8.8e-300 1033.5 786 69.3
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 1.1e-297 1026.5 811 67.6
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 7.0e-297 1023.8 751 71.6
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 7.2e-294 1013.8 825 66.7
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 9.4e-294 1013.4 891 63.6
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 1.2e-293 1013.1 820 67.0
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 1.2e-293 1013.1 821 67.0
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 1.0e-292 1010.0 822 65.5
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 2.3e-292 1008.8 822 65.8
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 3.0e-292 1008.4 819 66.3
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 3.0e-292 1008.4 757 71.1
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 4.0e-292 1008.1 822 66.7
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 8.8e-292 1006.9 821 65.7
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 4.4e-291 1004.6 821 66.0
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 4.8e-290 1001.1 815 65.3
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 1.1e-289 1000.0 821 65.9
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 1.1e-289 1000.0 812 65.6
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 9.1e-289 996.9 817 64.9
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 2.7e-288 995.3 819 65.3
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 5.0e-287 991.1 817 64.7
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 8.6e-287 990.3 810 65.7
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 1.9e-286 989.2 842 64.5
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 3.6e-285 984.9 919 60.2
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 4.7e-285 984.6 819 64.7
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 2.0e-283 979.2 815 64.9
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 4.4e-283 978.0 819 65.1
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 7.5e-283 977.2 828 65.0
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 1.7e-282 976.1 821 64.3
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 6.3e-282 974.2 819 64.6
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 8.3e-282 973.8 819 64.3
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 1.8e-281 972.6 819 64.2
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 5.4e-281 971.1 819 64.3
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 9.2e-281 970.3 819 64.5
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 2.9e-279 965.3 824 64.6
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 3.6e-277 958.4 835 63.1
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 1.4e-276 956.4 753 68.1
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 3.1e-276 955.3 817 62.5
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 7.5e-275 950.7 815 62.8
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 1.2e-272 943.3 862 61.1
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 9.5e-270 933.7 862 60.7
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 1.3e-250 870.2 818 57.3
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 1.4e-249 866.7 822 56.9
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 1.9e-249 866.3 817 58.1
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 6.6e-247 857.8 819 59.5
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 3.9e-239 832.0 678 66.1
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 1.2e-235 820.5 862 52.2
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 2.0e-227 793.1 820 57.3
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 7.1e-217 758.1 666 62.9
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 2.5e-214 749.6 595 68.4
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 1.8e-175 620.5 627 58.4
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 3.5e-171 606.3 832 43.8
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 1.0e-170 604.7 780 44.5
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 1.2e-166 591.3 762 44.8
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 4.3e-153 546.2 490 63.5
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 2.2e-149 533.9 860 39.0
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 2.9e-149 533.5 539 57.5
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 9.5e-145 518.5 324 78.7
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 2.1e-144 517.3 398 71.1
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 3.6e-144 516.5 789 40.4
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.2e-142 511.5 377 67.9
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 2.1e-139 500.7 835 38.4
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.5e-113 414.8 271 75.6
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 6.0e-107 392.9 480 51.7
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 7.6e-102 375.9 273 68.5
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.0e-93 349.0 275 59.6
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 6.3e-88 329.7 313 57.8
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 7.0e-79 299.7 242 69.8
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 1.6e-62 245.4 813 26.9
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 8.6e-53 213.0 352 40.9
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 7.3e-44 183.3 163 60.1
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 1.6e-43 182.2 835 23.1
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 2.1e-43 181.8 219 52.1
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 7.8e-38 163.3 125 68.8
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 1.5e-36 159.1 119 66.4
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 8.9e-34 149.8 96 77.1
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 2.3e-29 135.2 101 69.3
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 3.0e-29 134.8 200 44.0
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 1.4e-26 125.9 207 38.6
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.5e-25 122.5 69 89.9
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 2.7e-22 111.7 72 76.4
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 7.8e-22 110.2 70 71.4
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 7.8e-22 110.2 70 71.4
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 1.5e-20 105.9 134 47.0
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 5.4e-15 87.4 86 60.5
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 1.2e-14 86.3 79 57.0
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 1.3e-11 76.3 68 63.2
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 1.6e-11 75.9 173 38.2
arahy.Tifrunner.gnm1.ann1.LTYN5B Arachis hypogaea HOM05D005589 ORTHO05D006948 5.4e-07 60.8 64 59.4
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 7.1e-07 60.5 47 63.8


User provided reference genes

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