Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002682g0110 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 3077.0 1593 100.0
Nitab4.5_0006802g0030 Nicotiana tabacum HOM05D004010 ORTHO05D004995 0.0e+00 2634.4 1758 81.3
Solyc02g086500.3 Solanum lycopersicum HOM05D004010 ORTHO05D004995 0.0e+00 2284.2 1915 66.8
Sopen02g031220 Solanum pennellii HOM05D004010 ORTHO05D004995 0.0e+00 2281.5 1911 66.5
Peaxi162Scf00129g01535 Petunia axillaris HOM05D004010 ORTHO05D004995 0.0e+00 2155.9 1941 63.7
PGSC0003DMG400012627 Solanum tuberosum HOM05D004010 ORTHO05D004995 0.0e+00 1969.5 1165 86.6
CAN.G473.4 Capsicum annuum HOM05D004010 ORTHO05D004995 0.0e+00 1949.5 1165 86.0
Dinv33448 Davidia involucrata HOM05D004010 ORTHO05D004995 0.0e+00 1671.8 1906 51.0
QL02p075066 Quercus lobata HOM05D004010 ORTHO05D004995 0.0e+00 1486.1 1913 46.3
CiPaw.03G042500 Carya illinoinensis HOM05D004010 ORTHO05D004995 0.0e+00 1458.0 1910 45.4
Cfa007379 Carpinus fangiana HOM05D004010 ORTHO05D004995 0.0e+00 1448.3 1903 45.6
Prupe.3G290300 Prunus persica HOM05D004010 ORTHO05D004995 0.0e+00 1446.4 1903 45.7
Rhsim10G0018100 Rhododendron simsii HOM05D004010 ORTHO05D004995 0.0e+00 1428.7 2031 43.4
MD09G1028200 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1416.0 1899 44.3
vmacro05856 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 0.0e+00 1405.2 1995 43.5
RcHm_v2.0_Chr2g0173001 Rosa chinensis HOM05D004010 ORTHO05D004995 0.0e+00 1401.0 1902 44.7
Haze_14730 Corylus avellana HOM05D004010 ORTHO05D004995 0.0e+00 1400.6 1986 43.5
Thecc.04G015900 Theobroma cacao HOM05D004010 ORTHO05D004995 0.0e+00 1400.6 1902 44.5
FvH4_6g51330 Fragaria vesca HOM05D004010 ORTHO05D004995 0.0e+00 1392.5 1899 43.7
MD17G1029800 Malus domestica HOM05D004010 ORTHO05D004995 0.0e+00 1392.5 1896 43.5
TWI36G0979 Tripterygium wilfordii HOM05D004010 ORTHO05D004995 0.0e+00 1383.2 1904 44.0
Manes.17G113000 Manihot esculenta HOM05D004010 ORTHO05D004995 0.0e+00 1374.8 1906 43.9
Potri.001G346000 Populus trichocarpa HOM05D004010 ORTHO05D004995 0.0e+00 1372.8 1902 44.1
CANSAT64G1980 Cannabis sativa HOM05D004010 ORTHO05D004995 0.0e+00 1354.3 1904 44.2
Nn4g22648 Nelumbo nucifera HOM05D004010 ORTHO05D004995 0.0e+00 1336.2 1904 43.2
CSS0029677 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1333.2 1148 60.6
Migut.H00083 Erythranthe guttata HOM05D004010 ORTHO05D004995 0.0e+00 1328.9 1922 42.9
HanXRQChr09g0255111 Helianthus annuus HOM05D004010 ORTHO05D004995 0.0e+00 1328.2 1907 43.3
CSS0006564 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 0.0e+00 1327.0 1147 60.2
Gorai.006G032700 Gossypium raimondii HOM05D004010 ORTHO05D004995 0.0e+00 1326.6 1906 43.2
ECA232G4079 Erigeron canadensis HOM05D004010 ORTHO05D004995 0.0e+00 1325.5 1889 43.0
Sabra16G0225000 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1325.5 2047 41.2
Lalb_Chr24g0397171 Lupinus albus HOM05D004010 ORTHO05D004995 0.0e+00 1325.1 1906 42.7
Lj2g0015656 Lotus japonicus HOM05D004010 ORTHO05D004995 0.0e+00 1322.8 1906 43.2
Glyma.19G004700 Glycine max HOM05D004010 ORTHO05D004995 0.0e+00 1316.6 1905 42.9
Sabra16G0225700 Salix brachista HOM05D004010 ORTHO05D004995 0.0e+00 1312.7 2088 40.8
Lsat_1_v5_gn_4_183480 Lactuca sativa HOM05D004010 ORTHO05D004995 0.0e+00 1302.7 1915 42.1
TPR.G14085 Trifolium pratense HOM05D004010 ORTHO05D004995 0.0e+00 1288.1 1897 41.9
SalBow6G2090 Salvia bowleyana HOM05D004010 ORTHO05D004995 0.0e+00 1284.2 2009 41.2
Sed0022234 Sechium edule HOM05D004010 ORTHO05D004995 0.0e+00 1282.3 1909 42.2
Aqoxy3G01154 Aquilegia oxysepala HOM05D004010 ORTHO05D004995 0.0e+00 1281.2 1904 41.8
Medtr6g005010 Medicago truncatula HOM05D004010 ORTHO05D004995 0.0e+00 1276.9 1894 42.0
Ca_04154_v3 Cicer arietinum L. HOM05D004010 ORTHO05D004995 0.0e+00 1276.5 1901 41.6
Eucgr.I01751 Eucalyptus grandis HOM05D004010 ORTHO05D004995 0.0e+00 1272.7 1912 42.3
FAN05G5546 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1271.1 1900 41.3
SGA_v2.0_scaffold135G34899 Striga asiatica HOM05D004010 ORTHO05D004995 0.0e+00 1265.0 1958 41.6
TAR371G0622 Trochodendron aralioides HOM05D004010 ORTHO05D004995 0.0e+00 1265.0 1740 44.1
FAN09G4321 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1264.6 1897 41.2
VMungo0464G1595 Vigna mungo HOM05D004010 ORTHO05D004995 0.0e+00 1261.1 1918 41.2
FAN14G1482 Fragaria x ananassa HOM05D004010 ORTHO05D004995 0.0e+00 1258.8 1900 40.7
DCAR_001437 Daucus carota HOM05D004010 ORTHO05D004995 0.0e+00 1248.4 1903 41.0
arahy.Tifrunner.gnm1.ann1.8M6LVM Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1244.6 1906 41.2
PSO017G0470 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1230.3 1921 41.0
Ciclev10014033m.g Citrus clementina HOM05D004010 ORTHO05D004995 0.0e+00 1224.9 1148 55.8
Phvul.004G009818 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 0.0e+00 1224.9 1905 41.0
CsaV3_3G042730 Cucumis sativus L. HOM05D004010 ORTHO05D004995 0.0e+00 1222.2 1907 41.0
PGR142G3424 Punica granatum HOM05D004010 ORTHO05D004995 0.0e+00 1219.5 1911 41.0
PSO478G2834 Papaver somniferum HOM05D004010 ORTHO05D004995 0.0e+00 1217.6 1918 40.9
arahy.Tifrunner.gnm1.ann1.TK4K1F Arachis hypogaea HOM05D004010 ORTHO05D004995 0.0e+00 1211.4 1940 40.3
MELO3C009985.2 Cucumis melo HOM05D004010 ORTHO05D004995 0.0e+00 1209.9 1919 40.6
AL5G17090 Arabidopsis lyrata HOM05D004010 ORTHO05D004995 0.0e+00 1195.3 1897 39.6
ClCG10G013960 Citrullus lanatus HOM05D004010 ORTHO05D004995 0.0e+00 1193.7 1916 40.5
Carub.0005s0611 Capsella rubella HOM05D004010 ORTHO05D004995 0.0e+00 1192.6 1898 39.5
A06p40990 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1182.5 1896 39.3
BraA06t27018Z Brassica rapa HOM05D004010 ORTHO05D004995 0.0e+00 1182.2 1896 39.2
AT3G27670 Arabidopsis thaliana HOM05D004010 ORTHO05D004995 0.0e+00 1181.0 1894 39.2
BcaC06g30965 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1176.8 1899 39.1
Gohir.D09G028100 Gossypium hirsutum HOM05D004010 ORTHO05D004995 0.0e+00 1176.8 1150 54.4
BcaC06g33789 Brassica carinata HOM05D004010 ORTHO05D004995 0.0e+00 1173.7 1898 39.3
C07p36860 Brassica napus HOM05D004010 ORTHO05D004995 0.0e+00 1173.7 1898 39.3
BolC7t44198H Brassica oleracea HOM05D004010 ORTHO05D004995 0.0e+00 1173.7 1898 39.3
Oeu006813.1 Olea europaea HOM05D004010 ORTHO05D004995 0.0e+00 1172.1 1152 55.6
Sp2g16800 Schrenkiella parvula HOM05D004010 ORTHO05D004995 0.0e+00 1172.1 1896 38.7
THA.LOC104825324 Tarenaya hassleriana HOM05D004010 ORTHO05D004995 0.0e+00 1163.7 1897 38.2
AUR62043055 Chenopodium quinoa HOM05D004010 ORTHO05D004995 0.0e+00 1146.0 1862 40.6
Aa31LG2G5000 Aethionema arabicum HOM05D004010 ORTHO05D004995 0.0e+00 1124.4 1887 38.3
Psat1g055320 Pisum sativum HOM05D004010 ORTHO05D004995 0.0e+00 1120.1 1755 39.8
GSVIVG01032418001 Vitis vinifera HOM05D004010 ORTHO05D004995 0.0e+00 1095.9 1903 38.9
Sc03g0007550 Simmondsia chinensis HOM05D004010 ORTHO05D004995 5.3e-309 1065.1 1696 40.8
EL10Ac4g08587 Beta vulgaris HOM05D004010 ORTHO05D004995 1.8e-304 1050.0 1905 37.6
Thhalv10003508m.g Eutrema salsugineum HOM05D004010 ORTHO05D004995 5.2e-296 1021.9 1736 38.1
MBI10_g32033_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 5.6e-282 975.3 1150 48.3
ATR1158G023 Amborella trichopoda HOM05D004010 ORTHO05D004995 2.3e-280 969.9 1909 34.4
Duzib187G0443 Durio zibethinus HOM05D004010 ORTHO05D004995 3.3e-274 949.5 1895 35.5
AUR62034752 Chenopodium quinoa HOM05D004010 ORTHO05D004995 1.9e-266 923.7 2092 33.8
Lju41A39T81 Lonicera japonica HOM05D004010 ORTHO05D004995 2.0e-263 913.7 834 56.6
Cc07_g01800 Coffea canephora HOM05D004010 ORTHO05D004995 5.4e-261 905.6 1395 41.6
Hund06718 Selenicereus undatus HOM05D004010 ORTHO05D004995 2.9e-246 856.7 1066 45.4
Os01g0169500 Oryza sativa ssp. japonica HOM05D004010 ORTHO05D004995 1.4e-240 837.8 1144 42.1
Actinidia36110 Actinidia chinensis HOM05D004010 ORTHO05D004995 9.0e-232 808.5 1174 43.6
Zm00001eb123050 Zea mays HOM05D004010 ORTHO05D004995 8.2e-225 785.4 1164 40.6
Actinidia36109 Actinidia chinensis HOM05D004010 ORTHO05D004995 4.1e-200 703.4 643 57.4
Sopen00g011090 Solanum pennellii HOM05D004010 ORTHO05D004995 1.8e-195 688.0 415 86.0
vmacro05456 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 1.2e-188 665.2 828 46.1
Phvul.004G009761 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.2e-178 632.1 613 53.8
Atru.chr6.2370 Acer truncatum HOM05D004010 ORTHO05D004995 1.6e-167 595.1 528 57.0
Cpa.g.sc108.58 Carica papaya HOM05D004010 ORTHO05D004995 4.6e-167 593.6 1142 36.2
CDE05G1248 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.1e-163 582.4 796 43.1
Phvul.004G009161 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 4.6e-159 567.0 638 48.9
COL.COLO4_29096 Corchorus olitorius HOM05D004010 ORTHO05D004995 6.6e-150 536.6 531 53.9
Phvul.004G009536 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 6.2e-148 530.0 534 52.4
Mapoly0001s0420 Marchantia polymorpha HOM05D004010 ORTHO05D004995 1.5e-138 498.8 1945 26.0
Sopen00g012710 Solanum pennellii HOM05D004010 ORTHO05D004995 1.9e-125 455.3 272 83.8
Cc07_g01810 Coffea canephora HOM05D004010 ORTHO05D004995 7.6e-122 443.4 439 54.4
COL.COLO4_29097 Corchorus olitorius HOM05D004010 ORTHO05D004995 1.6e-119 435.6 1012 33.9
Phvul.004G009109 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.5e-109 401.7 438 48.9
SMO361G0448 Selaginella moellendorffii HOM05D004010 ORTHO05D004995 1.0e-105 389.8 1115 28.3
Phvul.007G113156 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.7e-101 374.0 341 56.9
Lju41A39G70 Lonicera japonica HOM05D004010 ORTHO05D004995 2.8e-100 371.7 910 32.9
CSS0026540 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 8.2e-100 370.2 352 55.1
Prupe.3G290500 Prunus persica HOM05D004010 ORTHO05D004995 1.1e-96 359.8 432 47.0
CARHR149120 Cardamine hirsuta HOM05D004010 ORTHO05D004995 1.8e-86 325.9 983 29.5
FAN05G3555 Fragaria x ananassa HOM05D004010 ORTHO05D004995 5.7e-85 320.9 381 48.6
Oeu006812.1 Olea europaea HOM05D004010 ORTHO05D004995 5.7e-85 320.9 333 54.4
Ciclev10017517m.g Citrus clementina HOM05D004010 ORTHO05D004995 5.9e-82 310.8 378 48.1
Cpa.g.sc108.59 Carica papaya HOM05D004010 ORTHO05D004995 1.1e-80 306.6 377 48.3
vmacro05455 Vaccinium macrocarpon HOM05D004010 ORTHO05D004995 4.1e-75 288.1 375 48.0
SEGI_20333 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 7.0e-75 287.3 443 36.6
Hund06717 Selenicereus undatus HOM05D004010 ORTHO05D004995 5.4e-67 261.2 358 47.2
unitig_0.g541 Utricularia gibba HOM05D004010 ORTHO05D004995 7.7e-66 257.3 331 41.4
Actinidia15573 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.5e-64 253.1 258 52.3
Psat2g096200 Pisum sativum HOM05D004010 ORTHO05D004995 1.6e-63 249.6 281 49.5
Atru.chr6.2368 Acer truncatum HOM05D004010 ORTHO05D004995 6.1e-63 247.7 223 61.4
CDE05G1902 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 1.0e-62 246.9 261 51.0
CSS0021155 Camellia sinensis var. sinensis HOM05D004010 ORTHO05D004995 4.0e-62 245.0 235 59.1
Hma1.2p1_1291F.1_g273520 Hydrangea macrophylla HOM05D004010 ORTHO05D004995 1.4e-59 236.5 376 43.1
CAN.G473.5 Capsicum annuum HOM05D004010 ORTHO05D004995 3.5e-58 231.9 130 90.0
Atru.chr6.2275 Acer truncatum HOM05D004010 ORTHO05D004995 4.3e-56 224.9 209 60.8
CDE05G2835 Ceratophyllum demersum HOM05D004010 ORTHO05D004995 2.1e-55 222.6 399 39.1
MBI10_g46391_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 1.7e-52 213.0 281 46.6
CBR_g19445 Chara braunii HOM05D004010 ORTHO05D004995 2.3e-49 202.6 832 24.3
MBI10_g39276_MAGBIO Magnolia biondii HOM05D004010 ORTHO05D004995 2.4e-43 182.6 228 48.7
Atru.chr6.2279 Acer truncatum HOM05D004010 ORTHO05D004995 1.2e-42 180.3 141 65.2
Phvul.004G009701 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 2.1e-42 179.5 189 50.3
Actinidia15574 Actinidia chinensis HOM05D004010 ORTHO05D004995 1.1e-40 173.7 228 46.9
Atru.chr6.2281 Acer truncatum HOM05D004010 ORTHO05D004995 1.9e-40 172.9 145 62.1
Atru.chr6.2371 Acer truncatum HOM05D004010 ORTHO05D004995 9.5e-40 170.6 161 55.3
Ah.06g187170 Amaranthus hybridus HOM05D004010 ORTHO05D004995 3.0e-33 149.1 137 59.1
FAN14G2166 Fragaria x ananassa HOM05D004010 ORTHO05D004995 1.9e-32 146.4 146 56.2
RcHm_v2.0_Chr5g0081041 Rosa chinensis HOM05D004010 ORTHO05D004995 1.2e-31 143.7 238 38.7
FvH4_6g51551 Fragaria vesca HOM05D004010 ORTHO05D004995 2.8e-31 142.5 142 54.9
Phvul.004G009127 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.8e-30 139.8 134 57.5
HPP92_004912 Vanilla planifolia HOM05D004010 ORTHO05D004995 8.9e-30 137.5 154 48.7
FAN14G1049 Fragaria x ananassa HOM05D004010 ORTHO05D004995 7.6e-29 134.4 224 40.6
Gohir.A09G028500 Gossypium hirsutum HOM05D004010 ORTHO05D004995 1.2e-26 127.1 231 38.5
Phvul.007G112678 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 3.0e-25 122.5 145 44.1
SEGI_19034 Sequoiadendron giganteum HOM05D004010 ORTHO05D004995 2.1e-23 116.3 257 31.9
FvH4_5g31861 Fragaria vesca HOM05D004010 ORTHO05D046033 1.4e-22 113.6 89 65.2
Phvul.004G008861 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 5.3e-22 111.7 104 54.8
FvH4_6g51560 Fragaria vesca HOM05D004010 ORTHO05D004995 9.3e-19 100.9 100 48.0
Atru.chr6.2280 Acer truncatum HOM05D004010 ORTHO05D004995 5.1e-17 95.1 101 49.5
FvH4_6g51541 Fragaria vesca HOM05D004010 ORTHO05D004995 2.1e-15 89.7 63 73.0
FvH4_6g51540 Fragaria vesca HOM05D004010 ORTHO05D004995 3.6e-15 89.0 93 46.2
Phvul.004G009000 Phaseolus vulgaris HOM05D004010 ORTHO05D004995 1.3e-12 80.5 104 43.3
RcHm_v2.0_Chr4g0387881 Rosa chinensis HOM05D004010 ORTHO05D343204 3.8e-12 79.0 141 32.6
HPP92_004913 Vanilla planifolia HOM05D004010 ORTHO05D004995 5.4e-11 75.1 84 52.4
BcaB05g24178 Brassica carinata HOM05D004010 ORTHO05D027244 3.5e-10 72.4 219 28.8
RcHm_v2.0_Chr3g0488481 Rosa chinensis HOM05D004010 ORTHO05D004995 5.1e-09 68.6 127 32.3
BcaC02g11087 Brassica carinata HOM05D004010 ORTHO05D006095 8.7e-09 67.8 163 35.0
RcHm_v2.0_Chr4g0403131 Rosa chinensis HOM05D003776 ORTHO05D004459 1.3e-07 63.9 42 71.4
RcHm_v2.0_Chr4g0403161 Rosa chinensis HOM05D003776 ORTHO05D004459 1.3e-07 63.9 42 71.4
CBR_g19447 Chara braunii HOM05D004010 ORTHO05D004995 9.0e-06 57.8 294 23.5


User provided reference genes

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