Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002682g0020 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.2e-120 436.4 211 100.0
Nitab4.5_0005432g0010 Nicotiana tabacum HOM05D005182 ORTHO05D006631 1.7e-109 399.4 207 93.2
PGSC0003DMG400000477 Solanum tuberosum HOM05D005182 ORTHO05D006631 6.6e-106 387.5 207 90.8
Sopen02g031300 Solanum pennellii HOM05D005182 ORTHO05D006631 2.5e-105 385.6 207 90.3
Solyc02g086560.3 Solanum lycopersicum HOM05D005182 ORTHO05D006631 7.3e-105 384.0 207 90.3
CAN.G1799.12 Capsicum annuum HOM05D005182 ORTHO05D006631 8.9e-103 377.1 207 87.4
Peaxi162Scf00129g01422 Petunia axillaris HOM05D005182 ORTHO05D006631 2.4e-79 299.3 158 89.2
SGA_v2.0_scaffold481G52321 Striga asiatica HOM05D005182 ORTHO05D006631 5.2e-79 298.1 185 73.0
Peaxi162Scf00304g01217 Petunia axillaris HOM05D005182 ORTHO05D006631 7.6e-78 294.3 156 89.1
Migut.H00088 Erythranthe guttata HOM05D005182 ORTHO05D006631 6.4e-77 291.2 209 68.9
DCAR_011246 Daucus carota HOM05D005182 ORTHO05D006631 8.4e-77 290.8 211 71.1
SalBow1G7073 Salvia bowleyana HOM05D005182 ORTHO05D006631 8.4e-77 290.8 189 73.5
Cc07_g01870 Coffea canephora HOM05D005182 ORTHO05D006631 1.6e-75 286.6 189 70.9
TWI12G0687 Tripterygium wilfordii HOM05D005182 ORTHO05D006631 2.7e-75 285.8 184 72.8
CSS0031267 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 4.6e-75 285.0 195 71.8
TAR629G2348 Trochodendron aralioides HOM05D005182 ORTHO05D006631 1.7e-74 283.1 203 67.0
Actinidia06755 Actinidia chinensis HOM05D005182 ORTHO05D006631 5.1e-74 281.6 202 69.3
MD09G1028700 Malus domestica HOM05D005182 ORTHO05D006631 5.1e-74 281.6 184 72.3
vmacro04855 Vaccinium macrocarpon HOM05D005182 ORTHO05D006631 1.1e-73 280.4 207 71.5
Aqoxy3G02839 Aquilegia oxysepala HOM05D005182 ORTHO05D006631 1.5e-73 280.0 177 75.1
MD17G1030300 Malus domestica HOM05D005182 ORTHO05D006631 1.9e-73 279.6 200 69.5
Gohir.A07G222400 Gossypium hirsutum HOM05D005182 ORTHO05D006631 4.3e-73 278.5 207 66.7
Cfa007391 Carpinus fangiana HOM05D005182 ORTHO05D006631 1.3e-72 276.9 179 74.3
QL02p075210 Quercus lobata HOM05D005182 ORTHO05D006631 2.1e-72 276.2 180 73.3
CiPaw.02G035100 Carya illinoinensis HOM05D005182 ORTHO05D006631 2.8e-72 275.8 210 65.2
Gohir.D07G229100 Gossypium hirsutum HOM05D005182 ORTHO05D006631 8.1e-72 274.2 207 65.7
Gorai.001G264200 Gossypium raimondii HOM05D005182 ORTHO05D006631 8.1e-72 274.2 207 65.7
Manes.17G115200 Manihot esculenta HOM05D005182 ORTHO05D006631 1.1e-71 273.9 164 79.3
Thecc.04G015200 Theobroma cacao HOM05D005182 ORTHO05D006631 3.1e-71 272.3 207 65.7
Rhsim02G0095200 Rhododendron simsii HOM05D005182 ORTHO05D006631 4.0e-71 271.9 230 62.6
Haze_14718 Corylus avellana HOM05D005182 ORTHO05D006631 5.3e-71 271.6 179 72.6
Dinv35097 Davidia involucrata HOM05D005182 ORTHO05D006631 5.3e-71 271.6 169 75.1
COL.COLO4_29086 Corchorus olitorius HOM05D005182 ORTHO05D006631 1.2e-70 270.4 196 68.9
ECA246G2600 Erigeron canadensis HOM05D005182 ORTHO05D006631 1.2e-70 270.4 194 69.1
VMungo0464G0237 Vigna mungo HOM05D005182 ORTHO05D006631 3.4e-70 268.9 169 76.3
Nn3g16771 Nelumbo nucifera HOM05D005182 ORTHO05D006631 4.4e-70 268.5 164 75.6
RcHm_v2.0_Chr2g0173081 Rosa chinensis HOM05D005182 ORTHO05D006631 5.8e-70 268.1 201 64.7
Glyma.05G004900 Glycine max HOM05D005182 ORTHO05D006631 1.7e-69 266.5 169 75.7
Eucgr.J02232 Eucalyptus grandis HOM05D005182 ORTHO05D006631 4.9e-69 265.0 183 70.5
Phvul.004G010800 Phaseolus vulgaris HOM05D005182 ORTHO05D006631 4.9e-69 265.0 169 74.6
Prupe.3G289500 Prunus persica HOM05D005182 ORTHO05D006631 4.9e-69 265.0 195 68.2
CANSAT64G2419 Cannabis sativa HOM05D005182 ORTHO05D006631 3.2e-68 262.3 146 82.9
THA.LOC104801894 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 4.2e-68 261.9 212 62.3
Atru.chr6.2358 Acer truncatum HOM05D005182 ORTHO05D006631 5.4e-68 261.5 146 82.9
Ciclev10016757m.g Citrus clementina HOM05D005182 ORTHO05D006631 5.4e-68 261.5 192 66.1
TPR.G14069 Trifolium pratense HOM05D005182 ORTHO05D006631 5.4e-68 261.5 149 82.6
Lj2g0004707 Lotus japonicus HOM05D005182 ORTHO05D006631 9.3e-68 260.8 169 72.8
Medtr6g005390 Medicago truncatula HOM05D005182 ORTHO05D006631 9.3e-68 260.8 169 74.6
MBI16_g14596_MAGBIO Magnolia biondii HOM05D005182 ORTHO05D006631 1.6e-67 260.0 148 79.7
THA.LOC104807109 Tarenaya hassleriana HOM05D005182 ORTHO05D006631 1.6e-67 260.0 209 61.7
Cpa.g.c28071.2 Carica papaya HOM05D005182 ORTHO05D006631 2.1e-67 259.6 195 66.7
FAN21G0797 Fragaria x ananassa HOM05D005182 ORTHO05D006631 2.1e-67 259.6 173 69.4
Ca_04172_v3 Cicer arietinum L. HOM05D005182 ORTHO05D006631 3.5e-67 258.8 169 75.7
FAN11G2673 Fragaria x ananassa HOM05D005182 ORTHO05D006631 3.5e-67 258.8 173 69.9
HanXRQChr17g0548351 Helianthus annuus HOM05D005182 ORTHO05D006631 3.5e-67 258.8 198 67.2
CsaV3_5G027220 Cucumis sativus L. HOM05D005182 ORTHO05D006631 6.0e-67 258.1 165 73.9
Cfa007386 Carpinus fangiana HOM05D005182 ORTHO05D006631 7.9e-67 257.7 172 72.1
Psat1g190920 Pisum sativum HOM05D005182 ORTHO05D006631 7.9e-67 257.7 149 80.5
FvH4_3g28470 Fragaria vesca HOM05D005182 ORTHO05D006631 1.7e-66 256.5 170 70.6
CARHR040200 Cardamine hirsuta HOM05D005182 ORTHO05D006631 2.3e-66 256.1 222 57.7
MELO3C021568.2 Cucumis melo HOM05D005182 ORTHO05D006631 5.1e-66 255.0 145 81.4
PGR024G0002 Punica granatum HOM05D005182 ORTHO05D006631 1.5e-65 253.4 171 70.8
Potri.001G178800 Populus trichocarpa HOM05D005182 ORTHO05D006631 2.5e-65 252.7 148 81.8
Sabra01G0148000 Salix brachista HOM05D005182 ORTHO05D006631 3.3e-65 252.3 144 82.6
Carub.0001s3930 Capsella rubella HOM05D005182 ORTHO05D006631 4.3e-65 251.9 181 66.9
AUR62032437 Chenopodium quinoa HOM05D005182 ORTHO05D006631 5.6e-65 251.5 209 58.4
Aa31LG10G4000 Aethionema arabicum HOM05D005182 ORTHO05D006631 7.3e-65 251.1 146 77.4
Sp1g37040 Schrenkiella parvula HOM05D005182 ORTHO05D006631 9.6e-65 250.8 180 65.6
ATR0661G518 Amborella trichopoda HOM05D005182 ORTHO05D006631 1.6e-64 250.0 144 76.4
AL1G57790 Arabidopsis lyrata HOM05D005182 ORTHO05D006631 2.8e-64 249.2 146 76.7
A08p03300 Brassica napus HOM05D005182 ORTHO05D006631 4.8e-64 248.4 158 71.5
Thhalv10011756m.g Eutrema salsugineum HOM05D005182 ORTHO05D006631 6.2e-64 248.1 171 68.4
CDE06G0683 Ceratophyllum demersum HOM05D005182 ORTHO05D006631 1.1e-63 247.3 143 77.6
PGR142G3360 Punica granatum HOM05D005182 ORTHO05D006631 1.4e-63 246.9 171 70.2
AT1G50170 Arabidopsis thaliana HOM05D005182 ORTHO05D006631 1.8e-63 246.5 146 76.0
AUR62024784 Chenopodium quinoa HOM05D005182 ORTHO05D006631 3.1e-63 245.7 170 65.3
Rhsim09G0149800 Rhododendron simsii HOM05D005182 ORTHO05D006631 3.1e-63 245.7 202 61.9
C03p89510 Brassica napus HOM05D005182 ORTHO05D006631 5.3e-63 245.0 158 71.5
BolC3t21265H Brassica oleracea HOM05D005182 ORTHO05D006631 5.3e-63 245.0 158 71.5
BraA08t32363Z Brassica rapa HOM05D005182 ORTHO05D006631 5.3e-63 245.0 158 70.9
EL10Ac2g02464 Beta vulgaris HOM05D005182 ORTHO05D006631 9.0e-63 244.2 146 73.3
Sed0010591 Sechium edule HOM05D005182 ORTHO05D006631 5.8e-62 241.5 139 79.9
CiPaw.03G042000 Carya illinoinensis HOM05D005182 ORTHO05D006631 9.9e-62 240.7 179 67.0
MSTRG.3153 Avicennia marina HOM05D005182 ORTHO05D006631 4.9e-61 238.4 155 74.8
Zm00001eb072570 Zea mays HOM05D005182 ORTHO05D006631 1.4e-60 236.9 161 66.5
Oeu057055.1 Olea europaea HOM05D005182 ORTHO05D006631 1.6e-59 233.4 123 85.4
Dinv33456 Davidia involucrata HOM05D005182 ORTHO05D006631 7.9e-59 231.1 188 62.8
RcHm_v2.0_Chr7g0219921 Rosa chinensis HOM05D005182 ORTHO05D006631 1.3e-58 230.3 171 65.5
Medtr6g005410 Medicago truncatula HOM05D005182 ORTHO05D006631 3.9e-58 228.8 148 70.9
arahy.Tifrunner.gnm1.ann1.NIKC7C Arachis hypogaea HOM05D005182 ORTHO05D006631 1.6e-56 223.4 144 72.9
arahy.Tifrunner.gnm1.ann1.1JMX4I Arachis hypogaea HOM05D005182 ORTHO05D006631 1.1e-55 220.7 145 73.8
CSS0002021 Camellia sinensis var. sinensis HOM05D005182 ORTHO05D006631 4.0e-55 218.8 175 63.4
Sed0025592 Sechium edule HOM05D005182 ORTHO05D006631 4.0e-55 218.8 162 67.3
ClCG00G002150 Citrullus lanatus HOM05D005182 ORTHO05D006631 1.2e-54 217.2 207 57.0
ClCG09G019170 Citrullus lanatus HOM05D005182 ORTHO05D006631 1.2e-54 217.2 207 57.0
GSVIVG01032428001 Vitis vinifera HOM05D005182 ORTHO05D006631 2.0e-54 216.5 123 81.3
unitig_746.g26550 Utricularia gibba HOM05D005182 ORTHO05D006631 1.7e-53 213.4 123 78.9
Hma1.2p1_1291F.1_g273570 Hydrangea macrophylla HOM05D005182 ORTHO05D006631 1.4e-52 210.3 123 78.0
SMO356G0462 Selaginella moellendorffii HOM05D005182 ORTHO05D006631 2.1e-51 206.5 139 62.6
SHI25748 Sapria himalayana HOM05D005182 ORTHO05D006631 1.8e-50 203.4 148 67.6
Psat1g058400 Pisum sativum HOM05D005182 ORTHO05D006631 3.0e-50 202.6 148 65.5
RcHm_v2.0_Chr1g0351301 Rosa chinensis HOM05D005182 ORTHO05D006631 1.1e-49 200.7 190 54.7
Pp3c3_11190 Physcomitrium patens HOM05D005182 ORTHO05D006631 5.7e-49 198.4 152 55.3
Psat1g058360 Pisum sativum HOM05D005182 ORTHO05D006631 1.4e-47 193.7 141 63.8
arahy.Tifrunner.gnm1.ann1.0YQ56L Arachis hypogaea HOM05D005182 ORTHO05D006631 4.1e-47 192.2 152 62.5
CBR_g4824 Chara braunii HOM05D005182 ORTHO05D006631 1.2e-46 190.7 140 62.9
Sc19g0005880 Simmondsia chinensis HOM05D005182 ORTHO05D006631 1.3e-45 187.2 196 49.0
BcaC01g01215 Brassica carinata HOM05D005182 ORTHO05D006631 2.2e-45 186.4 158 57.6
Cpa.g.sc130.27 Carica papaya HOM05D005182 ORTHO05D006631 3.2e-44 182.6 114 77.2
QL09p000526 Quercus lobata HOM05D005182 ORTHO05D006631 7.1e-44 181.4 99 82.8
SEGI_02514 Sequoiadendron giganteum HOM05D005182 ORTHO05D006631 4.6e-43 178.7 118 69.5
Os02g0296800 Oryza sativa ssp. japonica HOM05D005182 ORTHO05D006631 1.0e-42 177.6 107 71.0
Duzib187G0244 Durio zibethinus HOM05D005182 ORTHO05D006631 1.3e-42 177.2 100 82.0
FvH4_6g51400 Fragaria vesca HOM05D005182 ORTHO05D006631 2.3e-42 176.4 122 68.0
FAN14G1378 Fragaria x ananassa HOM05D005182 ORTHO05D006631 2.3e-42 176.4 122 68.0
Hund03875 Selenicereus undatus HOM05D005182 ORTHO05D006631 2.3e-42 176.4 145 57.9
CiPaw.02G035200 Carya illinoinensis HOM05D005182 ORTHO05D006631 3.0e-42 176.0 99 79.8
MCO08G118 Micromonas commoda HOM05D005182 ORTHO05D006631 3.0e-42 176.0 133 60.2
MSTRG.15523 Avicennia marina HOM05D005182 ORTHO05D006631 2.5e-41 172.9 123 67.5
Cpa.g.sc130.26 Carica papaya HOM05D005182 ORTHO05D006631 7.4e-41 171.4 112 75.0
Mapoly0034s0026 Marchantia polymorpha HOM05D005182 ORTHO05D006631 2.6e-38 162.9 110 63.6
Ah.12g060430 Amaranthus hybridus HOM05D005182 ORTHO05D006631 7.7e-38 161.4 186 44.6
AagrBONN_evm.TU.Sc2ySwM_228.389 Anthoceros agrestis HOM05D005182 ORTHO05D006631 7.4e-33 144.8 99 57.6
Cre04.g214100 Chlamydomonas reinhardtii HOM05D005182 ORTHO05D006631 3.8e-29 132.5 127 49.6
Prupe.3G289700 Prunus persica HOM05D005182 ORTHO05D006631 1.1e-28 131.0 73 80.8
arahy.Tifrunner.gnm1.ann1.C5A6Z1 Arachis hypogaea HOM05D005182 ORTHO05D006631 4.2e-28 129.0 116 56.9
EL10Ac6g14578 Beta vulgaris HOM05D002842 ORTHO05D003177 2.3e-26 123.2 72 77.8
EL10Ac5g10908 Beta vulgaris HOM05D005182 ORTHO05D006631 6.7e-26 121.7 72 76.4
Glyma.17G203751 Glycine max HOM05D005182 ORTHO05D006631 1.1e-25 120.9 75 69.3
EL10Ac6g13785 Beta vulgaris HOM05D005182 ORTHO05D006631 1.5e-25 120.6 72 76.4
Cpa.g.sc171.39 Carica papaya HOM05D005182 ORTHO05D006631 4.8e-24 115.5 68 79.4
FAN05G5577 Fragaria x ananassa HOM05D005182 ORTHO05D006631 1.1e-23 114.4 88 63.6
Prupe.3G207400 Prunus persica HOM05D005182 ORTHO05D006631 1.5e-22 110.5 85 67.1
Hund04415 Selenicereus undatus HOM05D005182 ORTHO05D006631 1.5e-22 110.5 64 73.4
Ah.15g100150 Amaranthus hybridus HOM05D008863 ORTHO05D006631 2.1e-19 100.1 66 62.1
PRCOL_00003784 Prasinoderma coloniale HOM05D005182 ORTHO05D006847 2.1e-19 100.1 86 53.5
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 8.0e-19 98.2 83 59.0
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 4.0e-18 95.9 61 73.8
RcHm_v2.0_Chr7g0228061 Rosa chinensis HOM05D005182 ORTHO05D006631 2.0e-17 93.6 72 61.1
Cpa.g.c30633.2 Carica papaya HOM05D005182 ORTHO05D006631 4.4e-17 92.4 58 72.4
PRCOL_00005828 Prasinoderma coloniale HOM05D005182 ORTHO05D006631 8.2e-16 88.2 80 51.2
Zm00001eb085260 Zea mays HOM05D005182 ORTHO05D006631 8.0e-11 71.6 57 61.4
RcHm_v2.0_Chr7g0228091 Rosa chinensis HOM05D005182 ORTHO05D344069 9.8e-09 64.7 95 38.9
Dinv33459 Davidia involucrata HOM05D005182 ORTHO05D006631 6.3e-08 62.0 33 78.8


User provided reference genes

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